View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_55 (Length: 317)
Name: NF6021_low_55
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_55 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 72 - 317
Target Start/End: Original strand, 1836270 - 1836515
Alignment:
| Q |
72 |
tatcccctccttgctgatctaagatttccaaataaaaccttaattatatgagattccacgaatttgaattagtggtattctaaaatcccatgacacctaa |
171 |
Q |
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| T |
1836270 |
tatcccctccttgctgatcaaagatttccaaataaaaccttaattatatgagattccacgaatttggattagtggtattctaaaatcccatgacacctaa |
1836369 |
T |
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| Q |
172 |
gttctgaaaacgcgttatgaaacaggggactgaattgtgtcacttaatccaattctttattattgctccataaacattgcgccaatccattcccataatt |
271 |
Q |
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| T |
1836370 |
gttctgaaaacgcgttatgaaacaggggactgaattgtgtcacttaatccaattctttattattgctccataaacattgcgccaatccattcccataatt |
1836469 |
T |
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| Q |
272 |
tcaagttcaaaagtggtcacacacatgtcactctaacattaattac |
317 |
Q |
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| T |
1836470 |
tcaagttcaaaagtggtcacacacatgtcactctaacattaattac |
1836515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 1836174 - 1836240
Alignment:
| Q |
7 |
aagaaaatctagggtctcacaagacttatgaatcttacagtgtgtactgataaataaacataaagta |
73 |
Q |
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| T |
1836174 |
aagaaaatctagggtctcacaagacttatgaatcttacagtgtgtactgataaataaacataaagta |
1836240 |
T |
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