View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_56 (Length: 316)
Name: NF6021_low_56
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 36260042 - 36260345
Alignment:
| Q |
1 |
ccgtgagcacaacaatagcatggtagtcttagcattgctgctggttgtgttcctttaagtgagtctggtcctttcctaaattctgatccatgcccccaca |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36260042 |
ccgtgagcacaacaataacatggtagtcttagcattgctgctggttgtgttcctttaagtgagtctggtcctttcctaaattctgatccatgcccccaca |
36260141 |
T |
|
| Q |
101 |
tatgcatctgcaaaatcatcaaatttctgattagtttgaatttttgagctaacatgttcattcatttctaatttcatagttttttaggccggtaaaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36260142 |
tatgcatctgcaaaatcatcaaatttctgattagtttgaatttttgagctaacatgttcattcatttctaatttcatagttttttaggccggtaaaattc |
36260241 |
T |
|
| Q |
201 |
aaaattagttgtgatcaagagtatatgcggccacttatatttgtaagaacctacattccacatagaaaaatagagataatgtatgatataagttttgtaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36260242 |
aaaattagttgtgatcaagagtatatgcggccacttatatttgtaagaacctacattccacatagaaaaatagagataatgtatgatataagttttgtaa |
36260341 |
T |
|
| Q |
301 |
gaat |
304 |
Q |
| |
|
|||| |
|
|
| T |
36260342 |
gaat |
36260345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 41939431 - 41939329
Alignment:
| Q |
7 |
gcacaacaatagcatggtagtcttagcattgctgctggttgtgttcctttaagtgagtctggtcctttcctaaattctgatccatgcccccacatatgca |
106 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||| ||||||||||||| | || || |||||||| || ||| ||| ||||||||| ||||||||||||| |
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|
| T |
41939431 |
gcacaacaataacatgggagtcttagcatggctgttggttgtgttcctcttagagattctggtccctttctatattgtgatccatgtccccacatatgca |
41939332 |
T |
|
| Q |
107 |
tct |
109 |
Q |
| |
|
||| |
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|
| T |
41939331 |
tct |
41939329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 19333379 - 19333278
Alignment:
| Q |
8 |
cacaacaatagcatggtagtcttagcattgctgctggttgtgttcctttaagtgagtctggtcctttcctaaattctgatccatgcccccacatatgcat |
107 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||||||| ||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
19333379 |
cacaacagtagcatggtagccttagcattgcagctggttgtgtgcctcttagtgagtctggccctttcctaaattcagatccatgcccccacatatgcat |
19333280 |
T |
|
| Q |
108 |
ct |
109 |
Q |
| |
|
|| |
|
|
| T |
19333279 |
ct |
19333278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 13516924 - 13517027
Alignment:
| Q |
7 |
gcacaacaatagcatggtagtcttagcattgctgctggttgtgttcctttaagtgagtctggtcctttcctaaattctgatccatgcccccacatatgca |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||| |||||| || || ||||| || || || ||| |||||||| ||||||||||||| |
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|
| T |
13516924 |
gcacaacaatagcatggtagccttagcattgctgttggttgtgatccttttagagaatctggcccctttctgtattgagatccatgtccccacatatgca |
13517023 |
T |
|
| Q |
107 |
tctg |
110 |
Q |
| |
|
|||| |
|
|
| T |
13517024 |
tctg |
13517027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 13606457 - 13606560
Alignment:
| Q |
7 |
gcacaacaatagcatggtagtcttagcattgctgctggttgtgttcctttaagtgagtctggtcctttcctaaattctgatccatgcccccacatatgca |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||| |||||| || || ||||| || || || ||| |||||||| ||||||||||||| |
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|
| T |
13606457 |
gcacaacaatagcatggtagccttagcattgctgttggttgtgatccttttagagaatctggcccctttctgtattgagatccatgtccccacatatgca |
13606556 |
T |
|
| Q |
107 |
tctg |
110 |
Q |
| |
|
|||| |
|
|
| T |
13606557 |
tctg |
13606560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 21035840 - 21035941
Alignment:
| Q |
9 |
acaacaatagcatggtagtcttagcattgctgctggttgtgttcctttaagtgagtctggtcctttcctaaattctgatccatgcccccacatatgcatc |
108 |
Q |
| |
|
|||||||||||| || || |||||||| ||| ||||||||| ||| | || || ||||||||||| || ||| ||||||||| ||||||||||||||| |
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|
| T |
21035840 |
acaacaatagcaaggaagccttagcatacctgttggttgtgtacctcttagagattctggtccttttctgtattgtgatccatgtccccacatatgcatc |
21035939 |
T |
|
| Q |
109 |
tg |
110 |
Q |
| |
|
|| |
|
|
| T |
21035940 |
tg |
21035941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 36569942 - 36569840
Alignment:
| Q |
7 |
gcacaacaatagcatggtagtcttagcattgctgctggttgtgttcctttaagtgagtctggtcctttcctaaattctgatccatgcccccacatatgca |
106 |
Q |
| |
|
|||||||| || || ||||| ||||||||| ||| ||||||||| ||| | || || || || ||||| || | | ||||||||||||||||||||||| |
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|
| T |
36569942 |
gcacaacagtaacaaggtagccttagcattcctgttggttgtgtacctcttagagattcaggaccttttctgtactgtgatccatgcccccacatatgca |
36569843 |
T |
|
| Q |
107 |
tct |
109 |
Q |
| |
|
||| |
|
|
| T |
36569842 |
tct |
36569840 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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