View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_57 (Length: 313)
Name: NF6021_low_57
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 252319 - 252015
Alignment:
| Q |
14 |
gagatggcttttactccatatccattgatcaagtcacacaaatttatgtcgtttcatagaatattaaaacttgtaactgataaattgagtttaaacttag |
113 |
Q |
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| T |
252319 |
gagatggcttttactccatatccattgatcaagtcacacaaatttatgtcatttcatagaatattaaaacttgtaactgataaattgagtttaaacttag |
252220 |
T |
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| Q |
114 |
caggaccataataatgcaggcggtcaata---------------acaactttcttcaataa------gagttgaagaaactgtaagaatgcttatccggc |
192 |
Q |
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| T |
252219 |
caggaccataataatgcaggcggtcaataacaaaataatagaacacaactttcttcgataagcgagcgagttgaagaaactgttagaacgcttatccggc |
252120 |
T |
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| Q |
193 |
aacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggtttctttcaaagcatatattctgcaaaaggaacaac |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
252119 |
aacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggtttctttcaaagcatatagtctgcaaaaggaacaac |
252020 |
T |
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| Q |
293 |
aaaag |
297 |
Q |
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||||| |
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| T |
252019 |
aaaag |
252015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 159 - 297
Target Start/End: Original strand, 246230 - 246367
Alignment:
| Q |
159 |
agagttgaagaaactgtaagaatgcttatccggcaacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggtt |
258 |
Q |
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|||||| |||||||||| |||||| ||||||||||||| || |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
246230 |
agagttaaagaaactgttagaatgtgtatccggcaaccccaa-ttccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtt |
246328 |
T |
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| Q |
259 |
tctttcaaagcatatattctgcaaaaggaacaacaaaag |
297 |
Q |
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| T |
246329 |
cattgcaaagcatatagtccgcaaaaggaacaacaaaag |
246367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 296
Target Start/End: Original strand, 231049 - 231162
Alignment:
| Q |
182 |
gcttatccggcaacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggtttctttcaaagcatatattctgca |
281 |
Q |
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||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| | || |||| |||||| |||||| |
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| T |
231049 |
gcttatccggcaaaccaaa-ttccacctcgttttccagcatcttttcatatgaatgtgtaattaggatttaggagaccgttgcaaaacatatagtctgca |
231147 |
T |
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| Q |
282 |
aaaggaacaacaaaa |
296 |
Q |
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|||||||||| |||| |
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| T |
231148 |
aaaggaacaataaaa |
231162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 183 - 297
Target Start/End: Complemental strand, 8814925 - 8814813
Alignment:
| Q |
183 |
cttatccggcaacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggtttctttcaaagcatatattctgcaa |
282 |
Q |
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||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | | | |||| | ||||||||||| |||||| |
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| T |
8814925 |
cttatccagcaacccaa--ttccatctcattttccagcatcttttcatatgaatatgtaattaggacttaagagtttgtcacaaagcatatagcctgcaa |
8814828 |
T |
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| Q |
283 |
aaggaacaacaaaag |
297 |
Q |
| |
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|||||||| ||||| |
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| T |
8814827 |
gaggaacaataaaag |
8814813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 9339995 - 9340067
Alignment:
| Q |
175 |
taagaatgcttatccggcaacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattagga |
248 |
Q |
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| T |
9339995 |
taagaacgcttatccagcaatccaaa-tgcaacctcattttccagcatcttttgatatgaatatgcaattagga |
9340067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 291
Target Start/End: Complemental strand, 9495641 - 9495549
Alignment:
| Q |
199 |
aaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggtttctttcaaagcatatattctgcaaaaggaacaa |
291 |
Q |
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||||||||||||||||| |||||||| |||||||||| ||||||| | || | ||| |||| || || |||||| |||||||||||||||| |
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| T |
9495641 |
aaattccacctcattttgcagcatctcttcatatgaacatgtaatcacgaattaggagtttgttggtaaacatatagtctgcaaaaggaacaa |
9495549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 9627237 - 9627188
Alignment:
| Q |
199 |
aaattccacctcattttccagcatcttttcatatgaatatgtaattagga |
248 |
Q |
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||||||||| |||||||| ||||| |||||||| |||||||||||||||| |
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| T |
9627237 |
aaattccacttcattttctagcatattttcatacgaatatgtaattagga |
9627188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 9335204 - 9335250
Alignment:
| Q |
199 |
aaattccacctcattttccagcatcttttcatatgaatatgtaatta |
245 |
Q |
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|||||| ||| | ||||||||||||||||||| |||||||||||||| |
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| T |
9335204 |
aaattcaaccactttttccagcatcttttcatctgaatatgtaatta |
9335250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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