View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_58 (Length: 312)
Name: NF6021_low_58
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 14396669 - 14396411
Alignment:
| Q |
1 |
tcatggggcgaggatgttacagatgttttgagtttcagagcacatagtatagtgcagactatatttcctgataattggccggatagaaagattcgaagat |
100 |
Q |
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| T |
14396669 |
tcatggggcgaggatgttacagatgttttgagtttcagagcacatagt-----gcagactatatttcctgataattggccggatagaaagattcgaagat |
14396575 |
T |
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| Q |
101 |
ttagtacacttactttatattataccatacagtattggaatgtgtgtgccgagccaagaagaaggagcccgaaacactacatgaaatactaacttctgat |
200 |
Q |
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| T |
14396574 |
ttaatacacttactttatactatac-----agtattggaatgtgtgtgccgagccgagaagaaggagcccgaaacaatacatgaaatactaacttctgat |
14396480 |
T |
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| Q |
201 |
atcttccatagatgtttgcttgcatgtgctgctgctgatcaagtactccaaataactcgcactagcagc |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14396479 |
atcttccatagatgtttgcttgcatgtgctgctgctgatcaagtactccaaataactcgcactagcagc |
14396411 |
T |
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