View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6021_low_59 (Length: 310)
Name: NF6021_low_59
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_59 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 52422980 - 52422689
Alignment:
| Q |
1 |
ctgttgtaatttagaattgaacatgcagtgtctcccaatataagtaacttgcattataaatgataactaacgttttttctttcctgtattattgaaggag |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52422980 |
ctgttgtaatttagaattgaatatgcagtgtctcccaatataagtaacttgccttataaatgataactaacgttttttctttcctgtattattgaaggag |
52422881 |
T |
|
| Q |
101 |
tcaaatcttaaatcaatgtaatgatcactacaccaaaatattgttaaataaactcaaaagcttgtcactatttctcacgttttgatttattaaaacaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52422880 |
tcaaatcttaaatcaatgtaatgatcactacaccaaaatattgttaaataaactcaaaagcttgtcactatttctcacgttttgatttattaaaacaaca |
52422781 |
T |
|
| Q |
201 |
tatttcctagcactttcagagccaacaagcacagtagaaatggtttggttattaatgattttatggtacatttcttgcaccacagagaatat |
292 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52422780 |
tatttcctagcactctcagagccaacaagcacagtagaaatggtttggttattaatgattttatggtacatttcttgcaccacagagaatat |
52422689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 42715529 - 42715493
Alignment:
| Q |
28 |
gtgtctcccaatataagtaacttgcattataaatgat |
64 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42715529 |
gtgtctcccaatataagtaatttgcattataaatgat |
42715493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 42715290 - 42715254
Alignment:
| Q |
256 |
tgattttatggtacatttcttgcaccacagagaatat |
292 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42715290 |
tgattttatggtacatttcttgcttcacagagaatat |
42715254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University