View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_61 (Length: 301)
Name: NF6021_low_61
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 12858074 - 12858346
Alignment:
| Q |
13 |
aatatataatataacataacatacactttatgttccatttctctctcttataaccttagtccccaaaaattcgaatttctcaaatccctttttcttacat |
112 |
Q |
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| T |
12858074 |
aatatataatataacataacatacactttttgttccatttctctctcttataaccttagtccccaaaaattcgaatttctcaaatccctttttcttacat |
12858173 |
T |
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| Q |
113 |
caccaccatcatcgtaaacacattttcttcttcacttcatacccaaaaaactttatactnnnnnnnttaaatacaagaatcatatcaattaaccatgaat |
212 |
Q |
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| T |
12858174 |
caccaccatcatcgtaaacacattttcttcttcacttcatacccaaaaaactttatactaaaaaaattaaatacaagaatcatatcaattaaccatgaat |
12858273 |
T |
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| Q |
213 |
cctcataatccaaaccaaacatttccatcagcacctcctggtattccttttcctatgcttacaccgaagcaag |
285 |
Q |
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| T |
12858274 |
cctcataatccaaaccaaacatttccatcagcaccacctggtattccttttcctatgcttacaccgaagcaag |
12858346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 12846362 - 12846412
Alignment:
| Q |
204 |
accatgaatcctcataatccaaaccaaacatttccatcagcacctcctggt |
254 |
Q |
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| T |
12846362 |
accatgaatcctcataattcaaaccaaacctttccatcagcaccacctggt |
12846412 |
T |
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