View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_64 (Length: 289)
Name: NF6021_low_64
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_64 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 40060666 - 40060378
Alignment:
| Q |
1 |
caaatgcaagatcttccacaggtctgtgaggaaacccaccaccaaataaaagatacctaccattccaaagaattcgagtaagatttggaaaataacaaaa |
100 |
Q |
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| T |
40060666 |
caaatgcaagatcttccacaggtctgtgaggaaacccaccaccaaataaaagatacctaccattccaaagaattcgagtaagatttggaaaataacaaaa |
40060567 |
T |
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| Q |
101 |
acaattcaattaaattatttatataaagagggatgctaagttgctaaccatgcactccaattttcagtccacatttttggctttgtattagagtttggtg |
200 |
Q |
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| T |
40060566 |
acaattcgattaaattatttatataaagagggatgctaagttgctaaccatgcactccaattttcagtccacatttttggctttgtattagagtttggtg |
40060467 |
T |
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| Q |
201 |
tgaattgatcgcagtaaaatccattgcaggtattaatctgcatgcagttaaagtaaaagtcaagtaagatgaatgcagacaacatacta |
289 |
Q |
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| T |
40060466 |
tgaattgatcgcagtaaaatccattgcaggtattaatctgcatgcagttaaagtaaaagtcaagtaagatgaatgcagacaacatacta |
40060378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 40086561 - 40086285
Alignment:
| Q |
1 |
caaatgcaagatcttccacaggtctgtgaggaaacccaccaccaaataaaagatacctaccattccaaagaattcgagtaagatttggaaaataacaaaa |
100 |
Q |
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| T |
40086561 |
caaatgcgagatcttccacaggtctgtgaggaaacccaccaccaaataaaagatacctaccattccaaagaattcaagtaagatttggaaaataacataa |
40086462 |
T |
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| Q |
101 |
acaattcaattaaattatttatataaagagggatgctaagttgctaaccatgcactccaattttcagtccacatttttggctttgtattagagtttggtg |
200 |
Q |
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| T |
40086461 |
acaaattgattaaattatttatataaaaaaggatgctaagttgctaaccatgcactccaattttcagtccacaattttggctttgttttagagtttggtg |
40086362 |
T |
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| Q |
201 |
tgaattgatcgcagtaaaatccattgcaggtattaatctgcatgcagttaaagtaaaagtcaagtaagatgaatgca |
277 |
Q |
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| T |
40086361 |
tgaattgatcgcagtaaaatccattgcaggtattaatctacttgcagttcaagtaaaaattgagtaagatgaatgca |
40086285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 40078623 - 40078494
Alignment:
| Q |
112 |
aaattatttatataaagagggatgctaagttgctaaccatgcactccaattttcagtccacatttttggctttgtattagagtttggtgtgaattgatcg |
211 |
Q |
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| T |
40078623 |
aaatgatttatataaaaaaggacagtaagtcgctaaccatccactccaattctcagtccacattttcggctttgtattagagtttggtgtgaattgatca |
40078524 |
T |
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| Q |
212 |
cagtaaaatccattgcaggtattaatctgc |
241 |
Q |
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| T |
40078523 |
cagtaaaatccattgcatgtattaatctgc |
40078494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 40078788 - 40078690
Alignment:
| Q |
1 |
caaatgcaagatcttccacaggtctgtgaggaaacccaccaccaaataaaagatacctaccattccaaagaattcgagtaagatttggaaaataacaaaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||| ||| ||||| ||||||||||||||| ||||| | |||||| ||||||||||||| |
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| T |
40078788 |
caaatgcaagatcttccacaggtcggtgaggaacagcaccaccgaatgaaagaaacctaccattccaaataattcaa--aagattgagaaaataacaaaa |
40078691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 22014987 - 22015094
Alignment:
| Q |
144 |
ctaaccatgcactccaattttcagtccacatttttggctttgtattagagtttggtgtgaattgatcgcagtaaaatccattgcaggtattaatctgcat |
243 |
Q |
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| T |
22014987 |
ctaaccatccgctccaattctcggtccacatttttggtttgttgtcagagtttggtgtgaattgatcgcaataaaaactattgcatgtgttaatctgcaa |
22015086 |
T |
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| Q |
244 |
gcagttaa |
251 |
Q |
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||| |||| |
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| T |
22015087 |
gcatttaa |
22015094 |
T |
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