View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_65 (Length: 285)
Name: NF6021_low_65
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 47408286 - 47408034
Alignment:
| Q |
14 |
gagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcaacaacaggtagg |
113 |
Q |
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| T |
47408286 |
gagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcagcaacaggtagg |
47408187 |
T |
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| Q |
114 |
tagagtatgtggtttatgtagccttacagatgnnnnnnnnaaggcgattgaatatagatttcaacgttatgctaagaaccattgtttttcttgcagataa |
213 |
Q |
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| T |
47408186 |
tagagtatgtggtttatgcagccttacagatgttttttttaaggcgattgaatatagatttcaacgttatgctaagaaccattgtttttcttgcagataa |
47408087 |
T |
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| Q |
214 |
aatccaatacgggttcttctggacaacagcaccctataagcatgccaactgtt |
266 |
Q |
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| T |
47408086 |
aatccaatacgggttcttctggacaacagcaccctataagcatgccaactgtt |
47408034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 266
Target Start/End: Complemental strand, 47391019 - 47390920
Alignment:
| Q |
167 |
atagatttcaacgttatgctaagaaccattgtttttcttgcagataaaatccaatacgggttcttctggacaacagcaccctataagcatgccaactgtt |
266 |
Q |
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| T |
47391019 |
atagatttcaacgttatgctaagaaccatcctttttattgcagacaaaaaccaatacaggttcttctggacagcagccccctgtaaggatgccaactgtt |
47390920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 47421987 - 47421739
Alignment:
| Q |
14 |
gagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcaacaacaggtagg |
113 |
Q |
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| T |
47421987 |
gagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
47421888 |
T |
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| Q |
114 |
tagagtatgtggtttatgtagccttacagatg-nnnnnnnnaaggcgattgaatatagatttcaacgttatgctaagaaccattgtttttcttgcagata |
212 |
Q |
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| T |
47421887 |
tagaatagatagtttactttatcttaca-atgtgttttcttaaggtggttaaagatagatttcaacgttatgctaagaaccatcctttttctt----aca |
47421793 |
T |
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| Q |
213 |
aaatccaatacgggttcttctggacaacagcaccctataagcatgccaactgtt |
266 |
Q |
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| T |
47421792 |
aaaaccaatacaggttcttctggacagcagccccctgtaaggatgccaactgtt |
47421739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 47391152 - 47391053
Alignment:
| Q |
14 |
gagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcaacaacaggtagg |
113 |
Q |
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| T |
47391152 |
gagatgaaatacctaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaacaacaggtagg |
47391053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 47419515 - 47419412
Alignment:
| Q |
14 |
gagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcaacaacaggtagg |
113 |
Q |
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|||||||||| ||||||| || | |||| ||||| ||||||||||||||| |||||||||| |||||| ||||||| || ||||||||||||||||||| |
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| T |
47419515 |
gagatgaaatgcccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
47419416 |
T |
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| Q |
114 |
taga |
117 |
Q |
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|||| |
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| T |
47419415 |
taga |
47419412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 47419382 - 47419314
Alignment:
| Q |
167 |
atagatttcaacgttatgctaagaaccattgtttttcttgcagataaaatccaatacgggttcttctgg |
235 |
Q |
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|||| |||||||||||||||||||||| | ||||||||| ||| |||| |||| || ||||||||||| |
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| T |
47419382 |
ataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaaaaccaacacaggttcttctgg |
47419314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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