View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_7 (Length: 587)
Name: NF6021_low_7
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_7 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 482 - 587
Target Start/End: Original strand, 11612208 - 11612313
Alignment:
| Q |
482 |
ttaattccccatatgaaaccgttgaacatttttcaactttcacactagcttccaccacaaattcatgaagaatatgaaccactttatcacaatcacaatt |
581 |
Q |
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| T |
11612208 |
ttaattccccatatgaaaccgttgaacatttttcaactttcacactagcttccaccacaaattcatgaagaatatgaaccactttatcacaatcacaatt |
11612307 |
T |
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| Q |
582 |
cacaat |
587 |
Q |
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|||||| |
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| T |
11612308 |
cacaat |
11612313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 181 - 336
Target Start/End: Original strand, 11611905 - 11612061
Alignment:
| Q |
181 |
tattcaaactaaacaaggaccctcatccctagatnnnnnnnnn-ttatgcaatcttgataatgacttatgcaactgacacacacacatattaagaaagag |
279 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11611905 |
tattcaaactaaacaaggaccctcatccctagataaaaaaaaaattatgcaatcttgataatgacttatgcaactgacacacacacatattaagaaagag |
11612004 |
T |
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| Q |
280 |
nnnnnnncagacactcacaacaaacatagcatagcaaaacactattcaacattcatg |
336 |
Q |
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| T |
11612005 |
aaaaaaacagacactcacaacaaacatagcatagcaaaacactattcaacattcatg |
11612061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 11611833 - 11611879
Alignment:
| Q |
102 |
tgccagtgagtaaagcatatagctaaactctatcctacagcatcttt |
148 |
Q |
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| T |
11611833 |
tgccagtgagtaaagcatatagctaaactctatcctacagcatcttt |
11611879 |
T |
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