View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6021_low_73 (Length: 276)
Name: NF6021_low_73
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_73 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 12367446 - 12367676
Alignment:
| Q |
11 |
cacagatactatattggaaatttttcgctctaaacggcggtagaaatttcgtacctataacatgataaccgaaatatttatgtatattaaatattagaaa |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
12367446 |
cacagatactatattggaaatttgtcgctctaaacggcggtagaaatttcgtacctctaacatgataacccaaatatttatgtatattaactattagaaa |
12367545 |
T |
|
| Q |
111 |
tagttgaaatagatctac-cnnnnnnnngaaatagttgaaatagtaacagccatataaatagagatagaaaatgaaaactttgtctctaatttcatcgca |
209 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12367546 |
tacttgaaatagatctacaaaaaaaaaaaaaatagttgaaatagtaacagccatataaatagagatagaaaatgaaaac--tgtctctaatttcatcgca |
12367643 |
T |
|
| Q |
210 |
acgtattagagacgtcaatttagtgaataattt |
242 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
12367644 |
aagtattagagacgtcaatttagtgaataattt |
12367676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 33731655 - 33731695
Alignment:
| Q |
41 |
taaacggcggtagaaatttcgtacctataacatgataaccg |
81 |
Q |
| |
|
||||||||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
33731655 |
taaacggcggttgaaacttcgtaccaataacatgataaccg |
33731695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University