View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6021_low_75 (Length: 273)
Name: NF6021_low_75
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_75 |
 | |
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| [»] scaffold0074 (1 HSPs) |
| | |
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| [»] scaffold0264 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0074 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 48715 - 48475
Alignment:
| Q |
16 |
attgtagggacaacaatgatgataattttctctgcacaaaataattagcatttataaacctcataatttcaacgtaataatcaacaatacgaaccttact |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48715 |
attgtagggacaacaatgatgataattttctctgcacaaaataattagcatttataaacctcataatttcaacgtaataatcaacaatacgaaccttact |
48616 |
T |
|
| Q |
116 |
tgcannnnnnngtaattggaaaggcggctgagcttcgtcgccctccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattctt |
215 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
48615 |
tgcatttttttgtaattggaaaggcagctgagcttcgtcgccctccatgtaaaaacggaacaattcaaacctcagattgcagctaggatagataattctt |
48516 |
T |
|
| Q |
216 |
cccccaacactacccaaatttgaccatggaattgctgtaac |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48515 |
cccccaacactacccaaatttgaccatggaattgctgtaac |
48475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 15352 - 15465
Alignment:
| Q |
141 |
ggctgagcttcgtcgccctccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattcttcccccaacactacccaaatttgacc |
240 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
15352 |
ggctgagcttcgtcaccctccatgtaaaaagggaacaattcaaacctcagattgcagctaggatagataattcttcccccaacactacccaaatttgacc |
15451 |
T |
|
| Q |
241 |
atggaattgctgta |
254 |
Q |
| |
|
||||||||| |||| |
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|
| T |
15452 |
atggaattgatgta |
15465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 22205761 - 22205648
Alignment:
| Q |
141 |
ggctgagcttcgtcgccctccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattcttcccccaacactacccaaatttgacc |
240 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
22205761 |
ggctgagcttcgtcaccctccatgtaaaaagggaacaattcaaacctcagattgcagctaggatagataattcttcccccaacactaccgaaatttgacc |
22205662 |
T |
|
| Q |
241 |
atggaattgctgta |
254 |
Q |
| |
|
||||||||| |||| |
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|
| T |
22205661 |
atggaattgatgta |
22205648 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 18981092 - 18981200
Alignment:
| Q |
146 |
agcttcgtcgccctccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattcttcccccaacactacccaaatttgaccatgga |
245 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18981092 |
agcttcgtcgccgtccatgtaaaattggaacaattcaaacctcagattgcagctaggatatataattcttcccccaacactacccaaatttgaccatgga |
18981191 |
T |
|
| Q |
246 |
attgctgta |
254 |
Q |
| |
|
||||||||| |
|
|
| T |
18981192 |
attgctgta |
18981200 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 24385978 - 24385868
Alignment:
| Q |
146 |
agcttcgtcgccctccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattcttcccccaacactacccaaatttgaccatgga |
245 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
24385978 |
agcttcgtcgccgtccatgtaaaattggaacaattcaaacctcagattgcagctaggatatataattcttcccccaacactacccaaattttaccatgga |
24385879 |
T |
|
| Q |
246 |
attgctgtaac |
256 |
Q |
| |
|
||||||||||| |
|
|
| T |
24385878 |
attgctgtaac |
24385868 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 20085404 - 20085512
Alignment:
| Q |
146 |
agcttcgtcgccctccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattcttcccccaacactacccaaatttgaccatgga |
245 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20085404 |
agcttcgtcgccgtccatgtaaaattggaacaattcaaacctcagattgcagctaggatatataattcttcccccaacactacccaaatttgaccatgga |
20085503 |
T |
|
| Q |
246 |
attgctgta |
254 |
Q |
| |
|
|| |||||| |
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|
| T |
20085504 |
atcgctgta |
20085512 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 18996926 - 18997040
Alignment:
| Q |
137 |
aggcggctgagcttcgtcgccctccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattcttcccccaacactacccaaattt |
236 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||| ||| ||| |
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|
| T |
18996926 |
aggcggcagagcttcgtcaccctccatgtaaaattggaacaattcaaacctcagattgcagctaggatatataattcttcccctaacattactcaatttt |
18997025 |
T |
|
| Q |
237 |
gaccatggaattgct |
251 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18997026 |
gaccatggaattgct |
18997040 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 20237330 - 20237427
Alignment:
| Q |
159 |
tccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattcttcccccaacactacccaaatttgaccatggaattgctgtaac |
256 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
20237330 |
tccatgtaaaaaggaaacaattcaaacctcagattacagctaggatacataattcttcccccaacactgcccaaatttggccatggaattgctgtaac |
20237427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 22131314 - 22131411
Alignment:
| Q |
159 |
tccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattcttcccccaacactacccaaatttgaccatggaattgctgtaac |
256 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
22131314 |
tccatgtaaaaaggaaacaattcaaacctcagattacagctaggatacataattcttcccccaacactgcccaaatttggccatggaattgctgtaac |
22131411 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 20204723 - 20204826
Alignment:
| Q |
145 |
gagcttcgtcgccctccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattcttcccccaacactacccaaatttgaccatgg |
244 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || | |||||||| |||||||| |||||| ||||||||| |
|
|
| T |
20204723 |
gagcttcgtcgccgtccatgtaaaatttgaacaattcaaacctcagattgcagctaggatataagattcttcctccaacacttcccaaaaatgaccatgg |
20204822 |
T |
|
| Q |
245 |
aatt |
248 |
Q |
| |
|
|||| |
|
|
| T |
20204823 |
aatt |
20204826 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 21971284 - 21971387
Alignment:
| Q |
145 |
gagcttcgtcgccctccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattcttcccccaacactacccaaatttgaccatgg |
244 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| || || |||||||| |||||||| |||||| ||||||||| |
|
|
| T |
21971284 |
gagcttcgtcgccgtccatataaaatttgaacaattcaaacctcagattgcagctaggatatatgattcttcctccaacacttcccaaaaatgaccatgg |
21971383 |
T |
|
| Q |
245 |
aatt |
248 |
Q |
| |
|
|||| |
|
|
| T |
21971384 |
aatt |
21971387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 22098746 - 22098849
Alignment:
| Q |
145 |
gagcttcgtcgccctccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattcttcccccaacactacccaaatttgaccatgg |
244 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || | |||||||| |||||||| |||||| ||||||||| |
|
|
| T |
22098746 |
gagcttcgtcgccgtccatgtaaaatttgaacaattcaaacctcagattgcagctaggatataagattcttcctccaacacttcccaaaaatgaccatgg |
22098845 |
T |
|
| Q |
245 |
aatt |
248 |
Q |
| |
|
|||| |
|
|
| T |
22098846 |
aatt |
22098849 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 20237171 - 20237245
Alignment:
| Q |
19 |
gtagggacaacaatgatgataattttc------tctgcacaaaataattagcatttataaacctcataatttcaa |
87 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
20237171 |
gtagggacaacaatgaagataattttctgtttctctgcacaaaataagtaaaatttataaatctcataatttcaa |
20237245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 22131155 - 22131229
Alignment:
| Q |
19 |
gtagggacaacaatgatgataattttc------tctgcacaaaataattagcatttataaacctcataatttcaa |
87 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
22131155 |
gtagggacaacaatgaagataattttctgtttctctgcacaaaataagtaaaatttataaatctcataatttcaa |
22131229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 22205916 - 22205840
Alignment:
| Q |
16 |
attgtagggacaacaatgatgataattttc------tctgcacaaaataattagcatttataaacctcataatttcaa |
87 |
Q |
| |
|
||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
22205916 |
attgtagggacaacaatgaacacaattttccgtttgtctgcacaaaataatta-catttataaatctcataatttcaa |
22205840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 18996822 - 18996899
Alignment:
| Q |
42 |
tttctctgcacaaaataattagcatttataaacctcataatttcaacgtaataatcaacaatacgaaccttacttgca |
119 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| | ||||| ||||| || |||| | |||||| |||||||| |||| |
|
|
| T |
18996822 |
tttctctgcacaagataattaacatttataaatcacataaattcaatctagtaataatcaatacaaaccttacctgca |
18996899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 6243 - 6004
Alignment:
| Q |
24 |
gacaacaatgatgataattttctctgcacaaaataattagcatttataaacctcataatttcaacgtaataatcaacaatacgaaccttacttgcannnn |
123 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||| |||||||||| |||||||||| || ||| |||| |||||||| |||||||| |||| |
|
|
| T |
6243 |
gacaacaatgacgacaattttctctgcacaaagtaattaacatttataaatctcataattttaatgtagtaataaacaatacaaaccttacctgcattgt |
6144 |
T |
|
| Q |
124 |
nnngtaattg-gaa--------aggcggctgagcttcgtcgccctccatgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattct |
214 |
Q |
| |
|
||||| | ||| ||| |||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
6143 |
ctagtaatggagaaggattcccaggtggctgagcttttttaccgtccatgtaaaattggaacaattcaaacctcagattgcagctaggatatataattct |
6044 |
T |
|
| Q |
215 |
tcccccaacactacccaaatttgaccatggaattgctgta |
254 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6043 |
gcccccaacactacccaaatttgaccagggaattgctgta |
6004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 10402739 - 10402826
Alignment:
| Q |
163 |
tgtaaaaacggaacaattcaaacctcagattgcagctagggtagataattcttcccccaacactacccaaatttgaccatggaattgc |
250 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| ||||| || | || |||||| || ||||| ||||||| ||||| |||||||| |
|
|
| T |
10402739 |
tgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaataagaccaaggaattgc |
10402826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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