View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_low_76 (Length: 272)

Name: NF6021_low_76
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_low_76
NF6021_low_76
[»] chr1 (5 HSPs)
chr1 (32-251)||(50118689-50118907)
chr1 (177-255)||(30530327-30530414)
chr1 (210-255)||(25302613-25302658)
chr1 (210-255)||(33111881-33111926)
chr1 (210-255)||(34157575-34157620)
[»] chr3 (6 HSPs)
chr3 (172-255)||(3484815-3484905)
chr3 (173-210)||(44910814-44910851)
chr3 (210-255)||(21579170-21579217)
chr3 (210-255)||(26669086-26669133)
chr3 (210-255)||(34900696-34900743)
chr3 (177-209)||(37323778-37323810)
[»] chr4 (5 HSPs)
chr4 (177-255)||(31804259-31804344)
chr4 (172-255)||(46912722-46912814)
chr4 (176-210)||(24235430-24235464)
chr4 (210-255)||(1688396-1688443)
chr4 (177-209)||(4514193-4514225)
[»] chr2 (1 HSPs)
chr2 (172-209)||(25994212-25994249)
[»] chr6 (2 HSPs)
chr6 (177-255)||(7693371-7693458)
chr6 (210-255)||(14094967-14095014)
[»] chr8 (3 HSPs)
chr8 (210-251)||(45081129-45081170)
chr8 (174-210)||(154400-154436)
chr8 (210-255)||(33415679-33415726)
[»] chr7 (2 HSPs)
chr7 (210-255)||(34304648-34304693)
chr7 (210-255)||(48639353-48639398)
[»] scaffold0238 (1 HSPs)
scaffold0238 (210-255)||(16447-16494)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 32 - 251
Target Start/End: Original strand, 50118689 - 50118907
Alignment:
Q  32 ggagtacttaagaaataaaagcttttacgagaaagatgttataaatatttgggggtacttaaagaaataaaagcttttacgggaaagatgttataaatat 131  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  50118689 ggagtactgaagaaataaaagcttttacgagaaagatgttataaatatttgggggtacttaa-gaaataaaagcttttacgagaaagatgttataaatat 50118787  T
Q  132 ttatcagaaactatataaaaaatagagtagatgtagaataatttgtgacaattttcattttctctcttcttattggtcatagagaaagaaaaagaaagag 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50118788 ttatcagaaactatataaaaaatagagtagatgtagaataatttgtgacaattttcattttctctcttcttattggtcatagagaaagaaaaagaaagag 50118887  T
Q  232 ataataagaatataatgtga 251  Q
    ||||||| ||||||||||||    
T  50118888 ataataaaaatataatgtga 50118907  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 30530327 - 30530414
Alignment:
Q  177 tgacaattttcattttctctcttcttattggtc-------atagagaaagaaaaag--aaagagataataagaatataatgtgagtat 255  Q
    |||||| ||||||||||||||||||||||||||       || |||| ||||||||  | ||||||||||||||||||||||||||||    
T  30530327 tgacaactttcattttctctcttcttattggtccaaaacaatggagacagaaaaaggaagagagataataagaatataatgtgagtat 30530414  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 25302613 - 25302658
Alignment:
Q  210 atagagaaagaaaaagaaagagataataagaatataatgtgagtat 255  Q
    ||||||| |||||||| |||||| ||||||| ||||||||||||||    
T  25302613 atagagagagaaaaaggaagagagaataagagtataatgtgagtat 25302658  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 33111881 - 33111926
Alignment:
Q  210 atagagaaagaaaaagaaagagataataagaatataatgtgagtat 255  Q
    ||||||| ||||| | ||||||| ||||||||||||||||||||||    
T  33111881 atagagagagaaagaaaaagagagaataagaatataatgtgagtat 33111926  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 34157620 - 34157575
Alignment:
Q  210 atagagaaagaaaaagaaagagataataagaatataatgtgagtat 255  Q
    ||||| |||||||||| |||||| |||||||| |||||||||||||    
T  34157620 atagataaagaaaaaggaagagagaataagaagataatgtgagtat 34157575  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 3484905 - 3484815
Alignment:
Q  172 atttgtgacaattttcattttctctcttcttattggtc-------atagagaaagaaaaagaaagagataataagaatataatgtgagtat 255  Q
    ||||||||||| |||||||||||||||||| |||||||       || |||| |||||||  |||||| ||||||||||||||||||||||    
T  3484905 atttgtgacaactttcattttctctcttctcattggtccaaaacaattgagagagaaaaacgaagagagaataagaatataatgtgagtat 3484815  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 44910851 - 44910814
Alignment:
Q  173 tttgtgacaattttcattttctctcttcttattggtca 210  Q
    |||||||||| || ||||||||||||||||||||||||    
T  44910851 tttgtgacaacttacattttctctcttcttattggtca 44910814  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 21579217 - 21579170
Alignment:
Q  210 atagagaaagaaaaag--aaagagataataagaatataatgtgagtat 255  Q
    ||||||| ||||||||  | ||||||||||||||||||||||||||||    
T  21579217 atagagagagaaaaaggtagagagataataagaatataatgtgagtat 21579170  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 26669133 - 26669086
Alignment:
Q  210 atagagaaagaaaaagaaagaga--taataagaatataatgtgagtat 255  Q
    ||||||| |||||||| ||||||  |||||||||||||||||||||||    
T  26669133 atagagagagaaaaaggaagagagataataagaatataatgtgagtat 26669086  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 34900743 - 34900696
Alignment:
Q  210 atagagaaagaaaaagaaagaga--taataagaatataatgtgagtat 255  Q
    ||||||| |||||||||||||||  ||||||||| |||||||||||||    
T  34900743 atagagagagaaaaagaaagagagataataagaaaataatgtgagtat 34900696  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 37323810 - 37323778
Alignment:
Q  177 tgacaattttcattttctctcttcttattggtc 209  Q
    ||||||||||||||||||| |||||||||||||    
T  37323810 tgacaattttcattttctcccttcttattggtc 37323778  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Original strand, 31804259 - 31804344
Alignment:
Q  177 tgacaattttcattttctctcttcttattggtca-------tagagaaagaaaaagaaagagataataagaatataatgtgagtat 255  Q
    |||||| ||||||||||| ||||| |||||||||       |||||| ||||||||||||||| |||||||||||||| |||||||    
T  31804259 tgacaactttcattttctttcttcctattggtcaagaataatagagagagaaaaagaaagagagaataagaatataatctgagtat 31804344  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 46912722 - 46912814
Alignment:
Q  172 atttgtgacaattttcattttctctcttcttattggtc-------atagagaaagaaaaag--aaagagataataagaatataatgtgagtat 255  Q
    ||||| ||||| ||||||||||||||||||||||||||       || |||| ||||||||  ||||||| ||||||||||||||||||||||    
T  46912722 atttgggacaactttcattttctctcttcttattggtccaaaacaatggagagagaaaaaggaaaagagagaataagaatataatgtgagtat 46912814  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 24235464 - 24235430
Alignment:
Q  176 gtgacaattttcattttctctcttcttattggtca 210  Q
    ||||||||||| |||||||||||||||||||||||    
T  24235464 gtgacaattttaattttctctcttcttattggtca 24235430  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 1688396 - 1688443
Alignment:
Q  210 atagagaaagaaaaagaaagagata--ataagaatataatgtgagtat 255  Q
    ||||||| ||||||||||||||| |  |||||||||||||||||||||    
T  1688396 atagagagagaaaaagaaagagagagaataagaatataatgtgagtat 1688443  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 4514193 - 4514225
Alignment:
Q  177 tgacaattttcattttctctcttcttattggtc 209  Q
    ||||||||||||||||||||||||| |||||||    
T  4514193 tgacaattttcattttctctcttctcattggtc 4514225  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 25994249 - 25994212
Alignment:
Q  172 atttgtgacaattttcattttctctcttcttattggtc 209  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  25994249 atttgtgacaactttcattttctctcttcttattggtc 25994212  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 7693458 - 7693371
Alignment:
Q  177 tgacaattttcattttctctcttcttattggtc-------atagagaaagaaaaag--aaagagataataagaatataatgtgagtat 255  Q
    |||||||||| ||||||||||||||||||||||       || |||| ||||||||  | ||||| ||||||||||||||||||||||    
T  7693458 tgacaatttttattttctctcttcttattggtccaaaacaatggagagagaaaaaggaagagagagaataagaatataatgtgagtat 7693371  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 14095014 - 14094967
Alignment:
Q  210 atagagaaagaaaaag--aaagagataataagaatataatgtgagtat 255  Q
    ||||||| ||||||||  | ||||||||||||||||||||||||||||    
T  14095014 atagagagagaaaaaggtagagagataataagaatataatgtgagtat 14094967  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 45081170 - 45081129
Alignment:
Q  210 atagagaaagaaaaagaaagagataataagaatataatgtga 251  Q
    ||||||| ||||||||||||||| | ||||||||||||||||    
T  45081170 atagagagagaaaaagaaagagagattaagaatataatgtga 45081129  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 154436 - 154400
Alignment:
Q  174 ttgtgacaattttcattttctctcttcttattggtca 210  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  154436 ttgtgacaactttcattttctctctttttattggtca 154400  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 33415679 - 33415726
Alignment:
Q  210 atagagaaagaaaaag--aaagagataataagaatataatgtgagtat 255  Q
    ||||||| ||||||||  ||||||||||||| ||||||||||||||||    
T  33415679 atagagagagaaaaaggaaaagagataataaaaatataatgtgagtat 33415726  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 34304648 - 34304693
Alignment:
Q  210 atagagaaagaaaaagaaagagataataagaatataatgtgagtat 255  Q
    ||||||||||||||||  ||||| | ||||||||||||||||||||    
T  34304648 atagagaaagaaaaagggagagagagtaagaatataatgtgagtat 34304693  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 48639353 - 48639398
Alignment:
Q  210 atagagaaagaaaaagaaagagataataagaatataatgtgagtat 255  Q
    ||||||| |||||||| |||||| |||||||| |||||||||||||    
T  48639353 atagagagagaaaaaggaagagagaataagaagataatgtgagtat 48639398  T

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Target: scaffold0238 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 16494 - 16447
Alignment:
Q  210 atagagaaagaaaaag--aaagagataataagaatataatgtgagtat 255  Q
    ||||||| ||||||||  ||||||| ||||||||||||||||||||||    
T  16494 atagagagagaaaaaggaaaagagagaataagaatataatgtgagtat 16447  T

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