View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_79 (Length: 264)
Name: NF6021_low_79
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 46014081 - 46013848
Alignment:
| Q |
12 |
atcatcaaccaaaccaaccactagcaactaacaatggcaatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttcta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46014081 |
atcatcaaccaaaccaaccactagcaactaacaatggcaatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttcta |
46013982 |
T |
|
| Q |
112 |
ccttacctcacacaatcaccaccttctcaaaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactacttactctcttcacccctcc |
211 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46013981 |
ccttacctcacacaatcaccactttctcaaaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactacttactctcttcacccctcc |
46013882 |
T |
|
| Q |
212 |
aaatgaagctagagctgctgttaacatctccaag |
245 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
46013881 |
aaatgaagctagagctgctgttaacatctccaag |
46013848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 46246534 - 46246740
Alignment:
| Q |
39 |
ctaacaatggcaatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccaccttct |
138 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46246534 |
ctaacaatggcgatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccactttct |
46246633 |
T |
|
| Q |
139 |
caaaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactacttactctcttcacccctccaaatgaagctagagctgctgttaacat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46246634 |
caaaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactacttactctcttcacccctccaaatgaagctagagctgctgttaacat |
46246733 |
T |
|
| Q |
239 |
ctccaag |
245 |
Q |
| |
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||||||| |
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| T |
46246734 |
ctccaag |
46246740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 41 - 245
Target Start/End: Complemental strand, 46020403 - 46020199
Alignment:
| Q |
41 |
aacaatggcaatggagattacagccatgtcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccaccttctca |
140 |
Q |
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||||||||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46020403 |
aacaatggcgatggagattgcagctatggcttcactaccaacaccaaaaccttctcttccatctccttctaccttacctcacacaatcaccaccttctca |
46020304 |
T |
|
| Q |
141 |
aaacctcaacttagacgcatatcattaccaacatcaaccaccatttcactacttactctcttcacccctccaaatgaagctagagctgctgttaacatct |
240 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
46020303 |
aaacctcaacttagacgcatatcgttaccaacatcaaccaccatttcactacttactctcttcatccctccaaatgaagctagagctgctgtcaacatct |
46020204 |
T |
|
| Q |
241 |
ccaag |
245 |
Q |
| |
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||||| |
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|
| T |
46020203 |
ccaag |
46020199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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