View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6021_low_83 (Length: 260)
Name: NF6021_low_83
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 48126275 - 48126499
Alignment:
| Q |
1 |
aaaggaatgaataataataatagtaactaacctgccttggaggttgatgggttgaataacggagttgtgttatgaaacgtctccaacaagccatgtgaca |
100 |
Q |
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| T |
48126275 |
aaaggaatgaataataataatagtaactaacctgccttggaggttgatgggttgaataacggagttttgttatgaaacgtctccaacaagccatgtgaca |
48126374 |
T |
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| Q |
101 |
gtgtgttgagtcctctgagtgagtgagtgagtatgaacttcttcttctcttcctaacatgaatgattctctcactctccacatcgaattctcctataacc |
200 |
Q |
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| T |
48126375 |
gtgtgttgagtcctc----tgagtgagtgagtatgaacttcttcttctcttcctaacatgaatgattttctcactctccacatcgaattctcctataacc |
48126470 |
T |
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| Q |
201 |
gaattctactctaactaacaaattcactg |
229 |
Q |
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| T |
48126471 |
gaattctactctaactaacaaattcactg |
48126499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 48138614 - 48138534
Alignment:
| Q |
15 |
taataatagtaactaacctgccttggaggttgatgggttgaataacggagttgtgttatgaaacgtctccaacaagccatg |
95 |
Q |
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| T |
48138614 |
taataataataactaacctgccatggagattgatgggttgaataacggaggtgcgttatgaatcgcctccaacaagccatg |
48138534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 25251289 - 25251209
Alignment:
| Q |
15 |
taataatagtaactaacctgccttggaggttgatgggttgaataacggagttgtgttatgaaacgtctccaacaagccatg |
95 |
Q |
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| T |
25251289 |
taataataataactaacctgccatggagattgatgggttgaataacggaggtgcattatgaatcgcctccaacaagccatg |
25251209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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