View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_low_9 (Length: 560)

Name: NF6021_low_9
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_low_9
NF6021_low_9
[»] chr3 (3 HSPs)
chr3 (17-541)||(49613046-49613570)
chr3 (170-269)||(49618179-49618278)
chr3 (431-498)||(49618436-49618503)
[»] chr6 (19 HSPs)
chr6 (278-517)||(2964374-2964613)
chr6 (239-498)||(2658984-2659243)
chr6 (294-516)||(2997363-2997585)
chr6 (386-517)||(2951912-2952043)
chr6 (414-517)||(2934600-2934703)
chr6 (386-517)||(3003752-3003883)
chr6 (386-517)||(2927130-2927261)
chr6 (435-517)||(2982885-2982967)
chr6 (170-227)||(2964272-2964329)
chr6 (456-517)||(2937503-2937564)
chr6 (17-64)||(2659403-2659450)
chr6 (29-72)||(2964131-2964174)
chr6 (438-498)||(2974032-2974092)
chr6 (17-55)||(2972631-2972669)
chr6 (161-215)||(2997646-2997700)
chr6 (29-63)||(2997798-2997832)
chr6 (161-226)||(3004019-3004084)
chr6 (161-229)||(2659238-2659306)
chr6 (125-225)||(2951681-2951781)
[»] chr7 (3 HSPs)
chr7 (177-276)||(20012374-20012473)
chr7 (26-103)||(20012231-20012308)
chr7 (17-64)||(3338812-3338859)
[»] scaffold0024 (2 HSPs)
scaffold0024 (391-517)||(35216-35342)
scaffold0024 (17-64)||(35627-35674)
[»] chr5 (3 HSPs)
chr5 (50-103)||(1835002-1835055)
chr5 (50-103)||(40320473-40320526)
chr5 (50-103)||(41407041-41407094)
[»] chr4 (1 HSPs)
chr4 (50-103)||(24227918-24227971)


Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 17 - 541
Target Start/End: Original strand, 49613046 - 49613570
Alignment:
Q  17 atggagcgccacaaactcatttacttcaaagcttttctccaacgaacccagacaaccctacacaccttcattcactgcatagattctgctatacctaatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49613046 atggagcgccacaaactcatttacttcaaagcttttctccaacgaacccagacaactctacacaccttcattcactgcatagattctgctatacctaatt 49613145  T
Q  117 ttcgtagctgttattctgaaaccctagactttactcaacaggagcttgttcaattaatcttaatcgattctggtttcataattgagcttttctggagatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49613146 ttcgtagctgttattctgaaaccctagactttactcaacaggagcttgttcaattaatcttaatcgattctggtttcataattgagcttttctggagatc 49613245  T
Q  217 ctattatgatgattggtctcaagatgatgggtttctcttaaaaccttggttagcttctaacataagattagatttgttgttacttgaaaatcaattgcca 316  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49613246 ctattatgacgattggtctcaagatgatgggtttctcttaaaaccttggttagcttctaacataagattagatttgttgttacttgaaaatcaattgcca 49613345  T
Q  317 ttttttgttattcaagaaatttacaatctttcatttacttctacaaatgctagtgttcccaagactaaaatcccttcttttcttgaacttagttttgatt 416  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49613346 ttttttgttattcaagaaatttacaatctttcatttacttctactaacgctagtgttcccaagactaaaatcccttcttttcttgaacttagttttgatt 49613445  T
Q  417 attttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactgatctgattaggattttccacctgcaacatcc 516  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49613446 attttgcatattacaatcaatcaaacttgggttttgataatggcgattttagtataaggcacttcactgatctgattaggattttccacctgcaacatcc 49613545  T
Q  517 tttgcaaagacggccgcttagaatt 541  Q
    |||||||||||||||||||||||||    
T  49613546 tttgcaaagacggccgcttagaatt 49613570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 170 - 269
Target Start/End: Original strand, 49618179 - 49618278
Alignment:
Q  170 ttaatcttaatcgattctggtttcataattgagcttttctggagatcctattatgatgattggtctcaagatgatgggtttctcttaaaaccttggttag 269  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||||||| |||| |||||||  ||||| ||||||||||||||||||||| |||||    
T  49618179 ttaatcttaattgattccgggttcataattgagcttttctggagatcctattgtgatcattggtcctaagataatgggtttctcttaaaacctttgttag 49618278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 431 - 498
Target Start/End: Original strand, 49618436 - 49618503
Alignment:
Q  431 aatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactgatctgattaggat 498  Q
    ||| ||||||| |||| ||||||| | |||||| ||||||||||||||||||||||||||||||||||    
T  49618436 aataaatcaaaattggattttgatgacggtgatattagtataaggcacttcactgatctgattaggat 49618503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 278 - 517
Target Start/End: Original strand, 2964374 - 2964613
Alignment:
Q  278 ataagattagatttgttgttacttgaaaatcaattgccattttttgttattcaagaaatttacaatctttcatttacttctacaaatgctagtgttccca 377  Q
    ||||||| ||||||  ||||||||||||||||  | || | ||| |||||| || ||||||||| ||||||||| | ||||||||||||||||||||| |    
T  2964374 ataagatcagatttaatgttacttgaaaatcagcttccctatttcgttattgaaaaaatttacagtctttcattgagttctacaaatgctagtgttccta 2964473  T
Q  378 agactaaaatcccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggca 477  Q
    | ||||| ||||||||||||||| |||| | |  |||||||||||  ||||||||| ||||||| |||| ||||||||| |||||| |||||||||||||    
T  2964474 acactaacatcccttcttttcttaaactcactactgattattttgattattacaataaatcaaaattggattttgataagggtgatattagtataaggca 2964573  T
Q  478 cttcactgatctgattaggattttccacctgcaacatcct 517  Q
    ||||||||||||||||||||| || ||  |||||||||||    
T  2964574 cttcactgatctgattaggatatttcatttgcaacatcct 2964613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 239 - 498
Target Start/End: Complemental strand, 2659243 - 2658984
Alignment:
Q  239 gatgatgggtttctcttaaaaccttggttagcttctaacataagattagatttgttgttacttgaaaatcaattgccattttttgttattcaagaaattt 338  Q
    |||||||||||||| || ||||||||||||| |  |   |||  ||||||||| |||||||||||||||||  | || ||||| |||||| |||||||||    
T  2659243 gatgatgggtttctatttaaaccttggttagatgatggtatagcattagatttattgttacttgaaaatcagcttccctttttcgttattgaagaaattt 2659144  T
Q  339 acaatctttcatttacttctacaaatgctagtgttcccaagactaaaatcccttcttttcttgaacttagttttgattattttgcatattacaatcaatc 438  Q
    |||| |||||||  | ||||||||||||||||||||| |||||||  ||||||  |||||||||||| | | || | ||||||   | || |||| ||||    
T  2659143 acaaactttcatcgagttctacaaatgctagtgttcctaagactacgatccctggttttcttgaactcactattaaatatttttattcttccaataaatc 2659044  T
Q  439 aaacttgggttttgataatggtgattttagtataaggcacttcactgatctgattaggat 498  Q
    |||||||  |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  2659043 aaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggat 2658984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 294 - 516
Target Start/End: Complemental strand, 2997585 - 2997363
Alignment:
Q  294 tgttacttgaaaatcaattgccattttttgttattcaagaaatttacaatctttcatttacttctacaaatgctagtgttcccaagactaaaatcccttc 393  Q
    ||||||||||||||||| | || ||||| |||||| || ||||||||| ||||||||| | ||||||||||||||||  ||| || ||||  |||||||     
T  2997585 tgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaatgctagtaatcctaacactatgatcccttg 2997486  T
Q  394 ttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactgatctgatt 493  Q
    |||||||||||| | | || ||| |||    | || |||| |||||||||||  ||||||| |||||||| |||||||||||||||||||||||||||||    
T  2997485 ttttcttgaactcactattaattttttcttttctttcaataaatcaaacttgttttttgatgatggtgatattagtataaggcacttcactgatctgatt 2997386  T
Q  494 aggattttccacctgcaacatcc 516  Q
    ||||| || ||  ||||||||||    
T  2997385 aggatatttcatttgcaacatcc 2997363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 386 - 517
Target Start/End: Original strand, 2951912 - 2952043
Alignment:
Q  386 atcccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactg 485  Q
    |||| |||||||||| |||| | | || |||||||||  ||||||||| ||||||| |||| ||||||||| |||||| |||||||||||||||||||||    
T  2951912 atccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattggattttgataagggtgatattagtataaggcacttcactg 2952011  T
Q  486 atctgattaggattttccacctgcaacatcct 517  Q
    ||||||||||||| || ||  |||||||||||    
T  2952012 atctgattaggatatttcatttgcaacatcct 2952043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 414 - 517
Target Start/End: Original strand, 2934600 - 2934703
Alignment:
Q  414 attattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactgatctgattaggattttccacctgcaaca 513  Q
    |||||||||  ||||||||| ||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| || ||  |||||||    
T  2934600 attattttggttattacaataaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggatatttcatttgcaaca 2934699  T
Q  514 tcct 517  Q
    ||||    
T  2934700 tcct 2934703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 386 - 517
Target Start/End: Complemental strand, 3003883 - 3003752
Alignment:
Q  386 atcccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactg 485  Q
    |||| |||||||||| |||| | | || |||||||||  ||||||||| ||||||| |||| ||||||||| |||||| |||||||||| ||||||||||    
T  3003883 atccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattggattttgataagggtgatattagtataagtcacttcactg 3003784  T
Q  486 atctgattaggattttccacctgcaacatcct 517  Q
    ||||||||||||| || ||  |||||||||||    
T  3003783 atctgattaggatatttcatttgcaacatcct 3003752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 517
Target Start/End: Original strand, 2927130 - 2927261
Alignment:
Q  386 atcccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactg 485  Q
    |||| |||||||||| |||| | | || |||||||||  ||||||||| ||||||| |||  ||||||||| |||||| ||| |||||||||||||||||    
T  2927130 atccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattgaattttgataagggtgatattattataaggcacttcactg 2927229  T
Q  486 atctgattaggattttccacctgcaacatcct 517  Q
    |||||||| |||| || ||  |||||||||||    
T  2927230 atctgattcggatatttcatttgcaacatcct 2927261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 435 - 517
Target Start/End: Original strand, 2982885 - 2982967
Alignment:
Q  435 aatcaaacttgggttttgataatggtgattttagtataaggcacttcactgatctgattaggattttccacctgcaacatcct 517  Q
    ||||||| |||  |||||||||||||||| |||||||||||||||||||||||||||||||||| || ||  |||||||||||    
T  2982885 aatcaaaattgtcttttgataatggtgatattagtataaggcacttcactgatctgattaggatatttcatttgcaacatcct 2982967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 2964272 - 2964329
Alignment:
Q  170 ttaatcttaatcgattctggtttcataattgagcttttctggagatcctattatgatg 227  Q
    ||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||    
T  2964272 ttaatcttaatcgattctggttttataattgaacttttttgcagatcctattatgatg 2964329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 456 - 517
Target Start/End: Original strand, 2937503 - 2937564
Alignment:
Q  456 atggtgattttagtataaggcacttcactgatctgattaggattttccacctgcaacatcct 517  Q
    |||||||| |||||||||| ||||||||||||||||||||||| || ||  |||||||||||    
T  2937503 atggtgatattagtataagtcacttcactgatctgattaggatatttcatttgcaacatcct 2937564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 2659450 - 2659403
Alignment:
Q  17 atggagcgccacaaactcatttacttcaaagcttttctccaacgaacc 64  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||||    
T  2659450 atggaacgtcacaaactcatttacttgaaagcttttctccaacgaacc 2659403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 2964131 - 2964174
Alignment:
Q  29 aaactcatttacttcaaagcttttctccaacgaacccagacaac 72  Q
    ||||||||||||||||||| |||||||||||||||| |||||||    
T  2964131 aaactcatttacttcaaagattttctccaacgaaccgagacaac 2964174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 498
Target Start/End: Original strand, 2974032 - 2974092
Alignment:
Q  438 caaacttgggttttgataatggtgattttagtataaggcacttcactgatctgattaggat 498  Q
    |||| ||||||||||||||   |||| ||||||||| |||||||| |||||||||||||||    
T  2974032 caaaattgggttttgataacaatgatattagtataatgcacttcaatgatctgattaggat 2974092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 2972631 - 2972669
Alignment:
Q  17 atggagcgccacaaactcatttacttcaaagcttttctc 55  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  2972631 atggaacgtcacaaactcatttacttcaaagcttttctc 2972669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 2997700 - 2997646
Alignment:
Q  161 cttgttcaattaatcttaatcgattctggtttcataattgagcttttctggagat 215  Q
    |||||| | ||||||||||||||||| ||||| |||||||| ||||||| |||||    
T  2997700 cttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagat 2997646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 2997832 - 2997798
Alignment:
Q  29 aaactcatttacttcaaagcttttctccaacgaac 63  Q
    ||||||||| |||||||||||||||||||||||||    
T  2997832 aaactcattcacttcaaagcttttctccaacgaac 2997798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 3004084 - 3004019
Alignment:
Q  161 cttgttcaattaatcttaatcgattctggtttcataattgagcttttctggagatcctattatgat 226  Q
    |||||| | ||||||||||||||||| | ||| |||||| | ||||| ||||||| ||||||||||    
T  3004084 cttgttaagttaatcttaatcgattccgcttttataattcaacttttttggagatactattatgat 3004019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 2659306 - 2659238
Alignment:
Q  161 cttgttcaattaatcttaatcgattctggtttcataattgagcttttctggagatcctattatgatgat 229  Q
    |||||| | |||||||||||||||||  |||| |||||| | ||||| |||| || |||||||||||||    
T  2659306 cttgttaagttaatcttaatcgattcctgttttataattcaacttttttggacatactattatgatgat 2659238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 2951681 - 2951781
Alignment:
Q  125 tgttattctgaaaccctagactttactcaacaggagcttgttcaattaatcttaatcgattctggtttcataattgagcttttctggagatcctattatg 224  Q
    ||||||||||||||||||   ||| ||||  | || |||||| | ||||||||||||||||| | ||| |||||| | ||||| |||| ||||| |||||    
T  2951681 tgttattctgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaacttttttggacatcctgttatg 2951780  T
Q  225 a 225  Q
    |    
T  2951781 a 2951781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 20012374 - 20012473
Alignment:
Q  177 taatcgattctggtttcataattgagcttttctggagatcctattatgatgattggtctcaagatgatgggtttctcttaaaaccttggttagcttctaa 276  Q
    |||| ||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||| || |||||||| ||  ||||||||| | |||||| |||||    
T  20012374 taattgattctggttttatatttgagtttttctggagattctattatgatgattggtctgaaaatgatggggtttccttaaaaccattgttagcatctaa 20012473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 20012231 - 20012308
Alignment:
Q  26 cacaaactcatttacttcaaagcttttctccaacgaacccagacaaccctacacaccttcattcactgcatagattct 103  Q
    |||||||||| |||||||||||| |||||||||||| || |||||||  | | |||||||||||||| ||||||||||    
T  20012231 cacaaactcagttacttcaaagcatttctccaacgatccgagacaactttgcgcaccttcattcactacatagattct 20012308  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 3338812 - 3338859
Alignment:
Q  17 atggagcgccacaaactcatttacttcaaagcttttctccaacgaacc 64  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||    
T  3338812 atggaacgtcacaaactcatttacttcaaagcttttctccaacgaacc 3338859  T

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Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 391 - 517
Target Start/End: Complemental strand, 35342 - 35216
Alignment:
Q  391 ttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactgatctg 490  Q
    ||||||||||||||| | | || ||||||||  ||||| |||||||||||| |||| ||||||||||  |  |    | |||||||||||||||||||||    
T  35342 ttcttttcttgaactcactattaattattttcaatatttcaatcaatcaaaattggtttttgataataatagtcagtgcataaggcacttcactgatctg 35243  T
Q  491 attaggattttccacctgcaacatcct 517  Q
    |||||||| || ||  |||||||||||    
T  35242 attaggatatttcatttgcaacatcct 35216  T

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Target: scaffold0024; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 35674 - 35627
Alignment:
Q  17 atggagcgccacaaactcatttacttcaaagcttttctccaacgaacc 64  Q
    ||||| || |||||||||||||||||||||| ||||||||||||||||    
T  35674 atggaacgtcacaaactcatttacttcaaagattttctccaacgaacc 35627  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 1835002 - 1835055
Alignment:
Q  50 tttctccaacgaacccagacaaccctacacaccttcattcactgcatagattct 103  Q
    ||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||    
T  1835002 tttctccaacgaaccgagacaactctacccaccttcgttcactacatagattct 1835055  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 40320473 - 40320526
Alignment:
Q  50 tttctccaacgaacccagacaaccctacacaccttcattcactgcatagattct 103  Q
    ||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||    
T  40320473 tttctccaacgaaccgagacaactctacccaccttcgttcactacatagattct 40320526  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 41407094 - 41407041
Alignment:
Q  50 tttctccaacgaacccagacaaccctacacaccttcattcactgcatagattct 103  Q
    ||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||    
T  41407094 tttctccaacgaaccgagacaactctacccaccttcgttcactacatagattct 41407041  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 24227971 - 24227918
Alignment:
Q  50 tttctccaacgaacccagacaaccctacacaccttcattcactgcatagattct 103  Q
    ||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||    
T  24227971 tttctccaacgaaccgagacaactctacccaccttcgttcactacatagattct 24227918  T

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