View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_low_90 (Length: 251)

Name: NF6021_low_90
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_low_90
NF6021_low_90
[»] chr2 (29 HSPs)
chr2 (6-200)||(2373109-2373305)
chr2 (7-188)||(38822695-38822876)
chr2 (22-188)||(24935900-24936066)
chr2 (22-188)||(25684584-25684750)
chr2 (22-201)||(27090791-27090972)
chr2 (25-188)||(38536016-38536179)
chr2 (198-251)||(41319725-41319778)
chr2 (195-251)||(5096457-5096513)
chr2 (199-251)||(42754157-42754209)
chr2 (130-188)||(2485371-2485429)
chr2 (6-160)||(11534975-11535129)
chr2 (197-251)||(31603217-31603271)
chr2 (197-251)||(41437041-41437095)
chr2 (22-159)||(24193277-24193414)
chr2 (22-130)||(34028752-34028860)
chr2 (199-251)||(4137618-4137670)
chr2 (199-251)||(7724412-7724464)
chr2 (199-251)||(10333380-10333432)
chr2 (199-251)||(40471945-40471997)
chr2 (16-137)||(15284339-15284462)
chr2 (21-137)||(39698419-39698532)
chr2 (6-75)||(11998292-11998361)
chr2 (198-251)||(38964004-38964057)
chr2 (16-76)||(37981771-37981831)
chr2 (198-243)||(8373651-8373696)
chr2 (22-75)||(20157632-20157685)
chr2 (6-75)||(24193689-24193758)
chr2 (105-137)||(2085784-2085816)
chr2 (199-251)||(11277743-11277795)
[»] chr4 (27 HSPs)
chr4 (16-192)||(5117111-5117288)
chr4 (6-159)||(54509854-54510004)
chr4 (198-251)||(31152870-31152923)
chr4 (20-137)||(37370700-37370817)
chr4 (198-251)||(48380965-48381018)
chr4 (199-251)||(46608423-46608475)
chr4 (6-160)||(33449969-33450123)
chr4 (198-251)||(8525217-8525270)
chr4 (16-137)||(28100395-28100516)
chr4 (198-251)||(28914577-28914630)
chr4 (198-251)||(48652681-48652734)
chr4 (199-251)||(3708462-3708514)
chr4 (6-130)||(26336208-26336332)
chr4 (199-251)||(39332632-39332684)
chr4 (199-251)||(43447374-43447426)
chr4 (16-137)||(38230922-38231043)
chr4 (197-251)||(39171167-39171221)
chr4 (6-96)||(45332806-45332896)
chr4 (6-96)||(45340496-45340586)
chr4 (198-251)||(10385057-10385110)
chr4 (198-251)||(40411409-40411462)
chr4 (6-75)||(42720859-42720928)
chr4 (198-251)||(55631676-55631729)
chr4 (23-75)||(40143933-40143985)
chr4 (22-96)||(47685300-47685374)
chr4 (22-75)||(8583880-8583933)
chr4 (23-75)||(32322127-32322179)
[»] chr5 (23 HSPs)
chr5 (22-200)||(6902420-6902599)
chr5 (44-192)||(7857203-7857352)
chr5 (25-188)||(26876311-26876472)
chr5 (16-137)||(28594254-28594375)
chr5 (196-251)||(30721485-30721540)
chr5 (6-75)||(10571251-10571320)
chr5 (198-251)||(20040217-20040270)
chr5 (199-251)||(20023069-20023121)
chr5 (6-130)||(6828612-6828736)
chr5 (199-248)||(14607361-14607410)
chr5 (199-251)||(1780948-1781000)
chr5 (199-247)||(9936691-9936739)
chr5 (25-137)||(27786362-27786474)
chr5 (199-251)||(31190980-31191032)
chr5 (198-251)||(19344501-19344554)
chr5 (199-251)||(1831559-1831611)
chr5 (199-251)||(14057917-14057969)
chr5 (199-251)||(40317026-40317078)
chr5 (199-251)||(41262932-41262984)
chr5 (19-137)||(2276018-2276136)
chr5 (6-59)||(17518568-17518622)
chr5 (198-251)||(14633216-14633269)
chr5 (199-251)||(41410463-41410515)
[»] chr3 (30 HSPs)
chr3 (65-200)||(25712256-25712392)
chr3 (22-187)||(6783863-6784029)
chr3 (22-192)||(43151314-43151485)
chr3 (82-148)||(24574647-24574713)
chr3 (7-60)||(25713328-25713381)
chr3 (199-251)||(42098425-42098477)
chr3 (6-96)||(39338151-39338241)
chr3 (198-251)||(12948249-12948302)
chr3 (198-251)||(29455505-29455558)
chr3 (199-251)||(29720604-29720656)
chr3 (199-251)||(34263502-34263554)
chr3 (196-251)||(46866552-46866607)
chr3 (198-251)||(16434654-16434707)
chr3 (22-75)||(45134912-45134965)
chr3 (199-251)||(900886-900938)
chr3 (199-251)||(29793176-29793228)
chr3 (199-251)||(34555360-34555412)
chr3 (199-251)||(49076224-49076276)
chr3 (199-251)||(50673886-50673938)
chr3 (198-251)||(9484805-9484858)
chr3 (22-75)||(24150707-24150760)
chr3 (198-251)||(48927599-48927652)
chr3 (16-76)||(10215915-10215975)
chr3 (16-76)||(10225544-10225604)
chr3 (23-75)||(12103665-12103717)
chr3 (199-251)||(14750858-14750910)
chr3 (145-192)||(24574242-24574290)
chr3 (23-75)||(44276425-44276477)
chr3 (45-137)||(45215214-45215306)
chr3 (16-96)||(45926799-45926879)
[»] chr7 (23 HSPs)
chr7 (22-192)||(31494395-31494566)
chr7 (22-188)||(36355246-36355412)
chr7 (22-186)||(24939415-24939578)
chr7 (22-187)||(48545583-48545746)
chr7 (22-187)||(47031401-47031566)
chr7 (22-188)||(32630854-32631020)
chr7 (198-251)||(36820085-36820138)
chr7 (22-137)||(42678006-42678121)
chr7 (197-251)||(16806947-16807001)
chr7 (197-247)||(40232440-40232490)
chr7 (16-137)||(3634354-3634475)
chr7 (198-248)||(35265635-35265685)
chr7 (22-96)||(40097250-40097324)
chr7 (199-248)||(27621098-27621147)
chr7 (198-247)||(35693632-35693681)
chr7 (22-75)||(39301120-39301173)
chr7 (199-251)||(32345586-32345638)
chr7 (199-247)||(38069264-38069312)
chr7 (22-137)||(34115286-34115401)
chr7 (16-137)||(46037163-46037284)
chr7 (199-251)||(26651051-26651103)
chr7 (24-76)||(37042437-37042489)
chr7 (45-136)||(37649510-37649601)
[»] chr1 (26 HSPs)
chr1 (22-200)||(9191287-9191466)
chr1 (25-181)||(49459916-49460076)
chr1 (6-130)||(1928224-1928348)
chr1 (199-251)||(5606198-5606250)
chr1 (6-130)||(36402387-36402511)
chr1 (21-137)||(42657870-42657985)
chr1 (198-251)||(45299528-45299581)
chr1 (199-247)||(44741556-44741604)
chr1 (16-137)||(48194740-48194861)
chr1 (198-251)||(2138835-2138888)
chr1 (198-251)||(8250649-8250702)
chr1 (6-75)||(9831430-9831499)
chr1 (198-247)||(10124322-10124371)
chr1 (194-247)||(26544081-26544134)
chr1 (199-247)||(10100320-10100368)
chr1 (6-74)||(29208895-29208963)
chr1 (204-247)||(7075142-7075185)
chr1 (9-96)||(33243164-33243251)
chr1 (9-96)||(33263337-33263424)
chr1 (16-137)||(48203498-48203619)
chr1 (22-75)||(10896956-10897009)
chr1 (16-137)||(27198421-27198542)
chr1 (198-251)||(36035895-36035948)
chr1 (105-137)||(19007393-19007425)
chr1 (199-251)||(23393441-23393493)
chr1 (199-251)||(31651708-31651760)
[»] chr8 (19 HSPs)
chr8 (22-188)||(38806692-38806859)
chr8 (9-187)||(24296415-24296593)
chr8 (51-182)||(14723736-14723867)
chr8 (7-97)||(23185838-23185928)
chr8 (6-75)||(8502772-8502841)
chr8 (198-251)||(14378486-14378539)
chr8 (199-251)||(761759-761811)
chr8 (199-251)||(21132728-21132780)
chr8 (6-75)||(35142182-35142251)
chr8 (199-251)||(38842372-38842424)
chr8 (9-96)||(30382528-30382615)
chr8 (202-251)||(23547277-23547326)
chr8 (6-75)||(37567247-37567316)
chr8 (199-251)||(23437613-23437665)
chr8 (199-247)||(30464645-30464693)
chr8 (22-96)||(4302662-4302736)
chr8 (198-251)||(44887514-44887567)
chr8 (199-251)||(28583102-28583154)
chr8 (199-251)||(29708770-29708822)
[»] chr6 (19 HSPs)
chr6 (22-188)||(35164960-35165126)
chr6 (198-251)||(6142313-6142366)
chr6 (202-251)||(6188466-6188515)
chr6 (199-251)||(995772-995824)
chr6 (199-251)||(2397979-2398031)
chr6 (199-251)||(16969588-16969640)
chr6 (199-251)||(24798353-24798405)
chr6 (198-251)||(17496134-17496187)
chr6 (199-251)||(2667132-2667184)
chr6 (16-137)||(7100314-7100435)
chr6 (16-137)||(8794195-8794316)
chr6 (197-247)||(29514832-29514882)
chr6 (198-251)||(9023049-9023102)
chr6 (199-251)||(2656477-2656529)
chr6 (199-251)||(2913106-2913158)
chr6 (6-159)||(10643803-10643958)
chr6 (22-75)||(7858249-7858302)
chr6 (108-137)||(31609506-31609535)
chr6 (199-251)||(2141777-2141829)
[»] scaffold0472 (1 HSPs)
scaffold0472 (22-137)||(1698-1813)
[»] scaffold0221 (1 HSPs)
scaffold0221 (198-251)||(5585-5638)
[»] scaffold0287 (1 HSPs)
scaffold0287 (16-137)||(11610-11731)
[»] scaffold0001 (1 HSPs)
scaffold0001 (199-251)||(184175-184227)
[»] scaffold0202 (1 HSPs)
scaffold0202 (6-75)||(16417-16486)
[»] scaffold0016 (1 HSPs)
scaffold0016 (22-75)||(81657-81710)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 2373109 - 2373305
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaa-gatttcaatggattacctagta 104  Q
    |||||| || || |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| | |||    
T  2373109 gtccaacaaaattcgttggtatttaatcaagatttttcacaacttaaaaattgtcccttgatattcaaaaacttaaaagatttcaatggattacttggta 2373208  T
Q  105 gaatggattttgtgagactttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagac-ttttttactctcattata 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||  |||||||| ||||||| ||||||||||||||||||    
T  2373209 gaatggattttctgagactttttagttgaaaattttaaaactaacaatctcacataaatatctgagattttttgagactttttttactctcattata 2373305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 38822876 - 38822695
Alignment:
Q  7 tccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtaga 106  Q
    ||||| || ||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||  || ||||||||||||||||| | ||| |    
T  38822876 tccaacaaaatccggtggtattcgatcaagatttttcacaacttaaaaattgtctcttggtattaaaaaatgtatagatttcaatggattacttggtata 38822777  T
Q  107 atggattttgtgagactttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagactttttt 188  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||    
T  38822776 atggattttgtgagattttttagttgaaaattttaaaactaacaatctcatacaaagacatgagatttcttgagactctttt 38822695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 24936066 - 24935900
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    ||||||| |||||||||||||| ||||||||||||| ||| ||| ||||||||||  || |||||| |||||||| | || || ||| ||||||||||||    
T  24936066 tggtattaaatcaagatttttctcaacttaaaaattatcctttgttattcaaaaatatatagattttaatggattccttaatataatagattttgtgaga 24935967  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagactttttt 188  Q
    ||||||||||||||||||||||||||||||||||| | ||  |||||||||||||| ||||| ||||    
T  24935966 ctttttagttgaaaattttaaaactaacaatctcatataaggacttgagatttcttaagactctttt 24935900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 25684750 - 25684584
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    ||||||| |||||||||||||| ||||||||||||| ||| ||| ||||||||||  || |||||| |||| ||| | || || ||| ||||||||||||    
T  25684750 tggtattaaatcaagatttttctcaacttaaaaattatcctttgttattcaaaaatatatagattttaatgaattccttaatataatagattttgtgaga 25684651  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagactttttt 188  Q
    ||||||||||||||||||||||||||||||||||| | ||  |||||||||||||| ||||| ||||    
T  25684650 ctttttagttgaaaattttaaaactaacaatctcatataaggacttgagatttcttaagactctttt 25684584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 27090791 - 27090972
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaact-taaagatttcaatggattacctagtagaatggattttgtgag 120  Q
    ||||||||||  | ||||||| ||||||||||||||||||||||||||| ||||| | || |||||| ||| |||||| |  ||||||||||||||| ||    
T  27090791 tggtattcaactatgatttttaacaacttaaaaattgtcccttggtattaaaaaaatgtatagattttaatagattacttgatagaatggattttgtaag 27090890  T
Q  121 actttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagact-tttttactctcattatac 201  Q
    |||||||||||||||||||||||||||||||||||| ||| | |  | | ||||||||| ||| ||||||||||||||||||    
T  27090891 actttttagttgaaaattttaaaactaacaatctcatacagagatctaaaatttcttgaaactctttttactctcattatac 27090972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 38536179 - 38536016
Alignment:
Q  25 tattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgagactt 124  Q
    ||||||||||||||||||| ||||||||||| | || |||  |||| |||||  || |||||| |||||||| | |  || |||| ||||||||||||||    
T  38536179 tattcaatcaagatttttctcaacttaaaaactatctcttaatatttaaaaatatatagattttaatggattccttgctacaatgaattttgtgagactt 38536080  T
Q  125 tttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagactttttt 188  Q
    |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||    
T  38536079 tttagttgaaaattttaaaactaacaatctcatacaaacacgtgagatttcttgagactctttt 38536016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 41319725 - 41319778
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  41319725 atactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 41319778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 5096513 - 5096457
Alignment:
Q  195 attatactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||    
T  5096513 attatactccctccgtcccttaataagtgacacagttgattcaattacgcataccaa 5096457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 42754157 - 42754209
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  42754157 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 42754209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 2485429 - 2485371
Alignment:
Q  130 ttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagactttttt 188  Q
    |||| |||||||||||||||||||||| ||||| || ||||||||||||||||| ||||    
T  2485429 ttgagaattttaaaactaacaatctcatacaaagacctgagatttcttgagactctttt 2485371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 11534975 - 11535129
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtag 105  Q
    ||||||||| ||||  ||| |||||||  ||||||| ||||||||||||||||||  |||||||||||||   ||| ||||| ||||||||     |       
T  11534975 gtccaataaaatccagtggaattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagt 11535074  T
Q  106 aatggattttgtgagactttttagttgaaaattttaaaactaacaatctcacaca 160  Q
    |||||||||||||||||||||||||  ||||| |    |||||||||||||||||    
T  11535075 aatggattttgtgagactttttagtgtaaaatgtacctactaacaatctcacaca 11535129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 31603217 - 31603271
Alignment:
Q  197 tatactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||    
T  31603217 tatactccctccgtcccttaataagtgacacagttgacccaattaggcataccaa 31603271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 41437095 - 41437041
Alignment:
Q  197 tatactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||||| ||| |||||||||||||||||| ||| |||||||||||||    
T  41437095 tatactccctccgtcccttaataagtgacacagttgacccatttacgcataccaa 41437041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 24193414 - 24193277
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    |||||||||||  ||||||| ||||||||||||||||||  |||||||||||||   ||| ||||| ||||||||     |   ||||||||||||||||    
T  24193414 tggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgaga 24193315  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacac 159  Q
    |||||||||  ||||| |    ||||||||||||||||    
T  24193314 ctttttagtgtaaaatgtacctactaacaatctcacac 24193277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 34028860 - 34028752
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtag-aatggattttgtgag 120  Q
    |||||||||||  ||||||| ||||||||||||||||||  |||||||||||||   ||| ||||| ||||||||   ||  || |||||||||||||||    
T  34028860 tggtattcaattcagattttgcacaacttaaaaattgtctattggtattcaaaattataaggattttaatggatt-gttacgagtaatggattttgtgag 34028762  T
Q  121 actttttagt 130  Q
    ||||||||||    
T  34028761 actttttagt 34028752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 4137670 - 4137618
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||| ||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  4137670 tacttcctccattccttaataagtgacacagttgacccaattacgcataccaa 4137618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 7724412 - 7724464
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||| || ||| |||||||||||||||||| |||||||||||||||||    
T  7724412 tactccctctgtcccttaataagtgacacagttgacccaattacgcataccaa 7724464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 10333380 - 10333432
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| || ||||||||||||||    
T  10333380 tactccctccgtcccttaataagtgacacagttgacccgattacgcataccaa 10333432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 40471997 - 40471945
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| ||||| |||||||||||| |||||||||||||||||    
T  40471997 tactccctccgtcccttaataaatgacacagttgacccaattacgcataccaa 40471945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 15284462 - 15284339
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtatt-caaaaacttaaagatttcaatggattacctagtagaatggattt 114  Q
    ||||||||||||||||| ||||||| |||  |||||  |||||||  |||||||| |||||  ||| |||||| ||||||||   | ||| |||||||||    
T  15284462 atccgttggtattcaattaagatttctcatgacttatgaattgtctattggtattacaaaagtttatagattttaatggattcttttgtacaatggattt 15284363  T
Q  115 tgtgag-actttttagttgaaaat 137  Q
    |||||| ||||||||||| |||||    
T  15284362 tgtgagtactttttagttaaaaat 15284339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 39698532 - 39698419
Alignment:
Q  21 ttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgag 120  Q
    |||||||||||||||||||||||| |||||| ||| ||||   |||||||||||||  |||||||||  |||||||   |   |  ||||||||| ||||    
T  39698532 ttggtattcaatcaagatttttcataacttataaaatgtc---tggtattcaaaaatataaagatttagatggattctttgaaatgatggattttatgag 39698436  T
Q  121 actttttagttgaaaat 137  Q
    ||||||||||| |||||    
T  39698435 actttttagttaaaaat 39698419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 11998361 - 11998292
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||| ||||   ||||||||||  ||||||| ||||||||||||||||||  |||||||||||||    
T  11998361 gtccaataaaatccagaggtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaa 11998292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 38964057 - 38964004
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||| | ||||||| ||||||||||||||||||  ||||||||||||||||    
T  38964057 atactcctttcgttccttaataagtgacacagttgactcaattacgcataccaa 38964004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 37981771 - 37981831
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaa 76  Q
    ||||||||||||||||| | ||||| |||||||||| ||| ||||| | ||||||||||||    
T  37981771 atccgttggtattcaattaggatttctcacaacttataaaatgtccttaggtattcaaaaa 37981831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 8373696 - 8373651
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacg 243  Q
    ||||||| ||||| ||| |||||||||||||||||| |||||||||    
T  8373696 atactccatccgtcccttaataagtgacacagttgacccaattacg 8373651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 20157685 - 20157632
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    |||||||||||  ||||||| ||||||||||| ||||||  |||||||||||||    
T  20157685 tggtattcaattcagattttgcacaacttaaatattgtctattggtattcaaaa 20157632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 24193689 - 24193758
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||| || || |||||||||||  ||||||| ||||||||||||| |||   |||||||||||||    
T  24193689 gtccaataaaattcggtggtattcaattgagattttgcacaacttaaaaactgtttattggtattcaaaa 24193758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 2085784 - 2085816
Alignment:
Q  105 gaatggattttgtgagactttttagttgaaaat 137  Q
    |||||||||||||||||||||||| ||||||||    
T  2085784 gaatggattttgtgagactttttatttgaaaat 2085816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 11277795 - 11277743
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| ||||||||| ||||||||   |||||||||||||||    
T  11277795 tactccctccgtcccttaataagtgatacagttgatgaaattacgcataccaa 11277743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 5117111 - 5117288
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaact-taaagatttcaatggattacctagtagaatggattt 114  Q
    ||||| |||||||| ||||||||||||| |||||||||||||||| ||| ||||| ||||| | || ||||||||||||||| | |||||||||||||||    
T  5117111 atccggtggtattccatcaagatttttcgcaacttaaaaattgtctcttagtattaaaaaaatgtatagatttcaatggattccttagtagaatggattt 5117210  T
Q  115 tgtgagactttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagacttttttactc 192  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||    
T  5117211 tgtgagactttttagttaaaaattttaaaactaacaatctcatacaaagacttaagatttcttgagacttttttactc 5117288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 159
Target Start/End: Original strand, 54509854 - 54510004
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtag 105  Q
    ||||||||| ||||  |||||||||||  ||||||| ||||||||||||||||||  |||||||||||||   ||| ||||| ||||||||   ||   |    
T  54509854 gtccaataaaatccagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggatt-gtta--tg 54509950  T
Q  106 aatggattttgtgagactttttagttgaaaattttaaaactaacaatctcacac 159  Q
    |||||||||||||||||||||||||  ||||| |    ||||||||||||||||    
T  54509951 aatggattttgtgagactttttagtgtaaaatgtacctactaacaatctcacac 54510004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 31152923 - 31152870
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  31152923 atactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 31152870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 37370817 - 37370700
Alignment:
Q  20 gttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtga 119  Q
    |||| |||||||| ||||||| |||||||||| ||| ||||| | |||||||||||| | | |||||| ||||||||   |  | |||||||||||||||    
T  37370817 gttgctattcaattaagatttctcacaacttataaaatgtccttcggtattcaaaaattgatagattttaatggattcttttatggaatggattttgtga 37370718  T
Q  120 gactttttagttgaaaat 137  Q
    |||||| ||||| |||||    
T  37370717 gactttatagttaaaaat 37370700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 48381018 - 48380965
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  48381018 atactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 48380965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 46608475 - 46608423
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  46608475 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 46608423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 160
Target Start/End: Complemental strand, 33450123 - 33449969
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtag 105  Q
    ||||||||| || || |||||||||||  ||||||| ||||||||||||||||||  |||||||||||||   ||  ||||| |||||||||    |       
T  33450123 gtccaataaaattcggtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattctacggattttaatggattattgtgagt 33450024  T
Q  106 aatggattttgtgagactttttagttgaaaattttaaaactaacaatctcacaca 160  Q
    ||||||||||||||||| |||||||  ||||| |    |||||||||||||||||    
T  33450023 aatggattttgtgagacattttagtgtaaaatgtatctactaacaatctcacaca 33449969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 8525217 - 8525270
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| |||||||||||| ||||| |||||||||||||||||    
T  8525217 atactccctccgtccctgaataagtgacacggttgacccaattacgcataccaa 8525270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 28100516 - 28100395
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggatttt 115  Q
    |||||||| |||||||| ||||||| |||||||||| ||| ||||  || ||||||||||| | | ||||||  |||||||   |  | |||||||||||    
T  28100516 atccgttgatattcaattaagatttctcacaacttataaaatgtcttttagtattcaaaaattaatagattttgatggattcttttatggaatggatttt 28100417  T
Q  116 gtgagactttttagttgaaaat 137  Q
    | |||||||||||||| |||||    
T  28100416 gagagactttttagttaaaaat 28100395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 28914630 - 28914577
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||| ||||| ||| |||||||||||||||||| |||||||||||||||||    
T  28914630 atactccatccgtcccttaataagtgacacagttgacccaattacgcataccaa 28914577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 48652734 - 48652681
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| |||||||||||||||||| ||||||||| |||||||    
T  48652734 atactccctccgtcccttaataagtgacacagttgacccaattacggataccaa 48652681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 3708514 - 3708462
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||| | |||||||||||||||||    
T  3708514 tactccctccgtcccttaataagtgacacagttaacccaattacgcataccaa 3708462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 26336208 - 26336332
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtag 105  Q
    ||||||||| ||||   ||||||||||  ||||||| |||||||||||||||||   |||||||||||||   ||| ||||| |||||||||    |       
T  26336208 gtccaataaaatccagaggtattcaattgagattttacacaacttaaaaattgtttattggtattcaaaattctaaggattttaatggattattgtgagt 26336307  T
Q  106 aatggattttgtgagactttttagt 130  Q
    |||||||||||||||||||||||||    
T  26336308 aatggattttgtgagactttttagt 26336332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 39332632 - 39332684
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||| |||| ||| |||||||||||||||||| |||||||||||||||||    
T  39332632 tactccccccgtcccttaataagtgacacagttgacccaattacgcataccaa 39332684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 43447426 - 43447374
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| ||| |||||||||||||    
T  43447426 tactccctccgtcccttaataagtgacacagttgacccatttacgcataccaa 43447374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 38230922 - 38231043
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctag-tagaatggattt 114  Q
    |||||||||||||||||  |||||| |||  |||||  |||||||| |||||||||||||   || ||||||  ||||||| | | | | ||||||||||    
T  38230922 atccgttggtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggatt-cttggatggaatggattt 38231020  T
Q  115 tgtgagactttttagttgaaaat 137  Q
    ||||||||||||||||| |||||    
T  38231021 tgtgagactttttagttaaaaat 38231043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 39171221 - 39171167
Alignment:
Q  197 tatactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||||| ||| ||||||||| |||||||| | |||||||||||||||    
T  39171221 tatactccctccgtcccttaataagtgatacagttgacctaattacgcataccaa 39171167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 45332806 - 45332896
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggatt 96  Q
    ||||||||| ||||   ||||||||||  ||||||| ||||||||||||||||||  |||||||||||||   ||| ||||| ||||||||    
T  45332806 gtccaataaaatccagaggtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggatt 45332896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 45340496 - 45340586
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggatt 96  Q
    ||||||||| ||||   ||||||||||  ||||||| ||||||||||||||||||  |||||||||||||   ||| ||||| ||||||||    
T  45340496 gtccaataaaatccagaggtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggatt 45340586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 10385110 - 10385057
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| ||||||||||  |||||| |||||||||||||||||    
T  10385110 atactccctccgtcccttaataagtgacctagttgacccaattacgcataccaa 10385057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 40411409 - 40411462
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| ||||||||| |||||||| ||| |||||||||||||    
T  40411409 atactccctccgtcccttaataagtgatacagttgacccatttacgcataccaa 40411462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 42720859 - 42720928
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||| ||||   ||||||||||  ||||||| ||||||||||||||||||  |||||||||||||    
T  42720859 gtccaataaaatccagaggtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaa 42720928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 55631676 - 55631729
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||| ||| ||| |||||||||||||||||| ||||||||| |||||||    
T  55631676 atactcccttcgtcccttaataagtgacacagttgacccaattacgtataccaa 55631729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 40143933 - 40143985
Alignment:
Q  23 ggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||||  ||||||| ||||||||||||||||||  |||||||||||||    
T  40143933 ggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaa 40143985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 47685300 - 47685374
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggatt 96  Q
    |||||||||||  ||||||| | ||||||||||||||||  |||||||||||||   ||| ||||| ||||||||    
T  47685300 tggtattcaattgagattttgctcaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggatt 47685374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 8583933 - 8583880
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||||| |||||||| || |||||||||||||||   ||||||||||||    
T  8583933 tggtattcaattaagattttgcataacttaaaaattgtctactggtattcaaaa 8583880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 32322127 - 32322179
Alignment:
Q  23 ggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||||||||||||||||  |||||||||| |||   ||||||||||||    
T  32322127 ggtattcaatcaagatttttcatcacttaaaaatagtcttgtggtattcaaaa 32322179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 6902599 - 6902420
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||  ||  |||||||||||||||| | ||||||| ||||||||||||    
T  6902599 tggtattcaatcaagattttttacaacttaaaaattgtctcttggtattcaaaaatgtattgatttcaatggattacttggtagaattgattttgtgaga 6902500  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagact-tttttactctcattata 200  Q
    |||||||||| |||||| ||||||||||||||||| ||||| |  ||||||||||||||||| |||||||||||||||||    
T  6902499 ctttttagttaaaaattgtaaaactaacaatctcatacaaagatatgagatttcttgagactctttttactctcattata 6902420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 7857203 - 7857352
Alignment:
Q  44 acaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgagactttttagttgaaaattttaaa 143  Q
    ||||||||||||||||| |||| ||||||||||  || ||||||||||||||||| | |||||||||||||||||||||||||| ||| ||| |||||||    
T  7857203 acaacttaaaaattgtctcttgatattcaaaaatgtatagatttcaatggattacttggtagaatggattttgtgagacttttttgttaaaatttttaaa 7857302  T
Q  144 actaacaatctcacacaaatacttgagatttcttgagact-tttttactc 192  Q
    ||||||||||||| ||||| || ||||||||||||| ||| |||||||||    
T  7857303 actaacaatctcatacaaagacatgagatttcttgaaactctttttactc 7857352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 26876311 - 26876472
Alignment:
Q  25 tattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgagactt 124  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||| |||| | | | ||||||||||||||| ||||| ||| |||||  ||||||||    
T  26876311 tattcaatcaagatttttcacaacttaaaaattgtctcttagtattctaaaattaatatatttcaatggattacttagtataatagattt--tgagactt 26876408  T
Q  125 tttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagactttttt 188  Q
    ||||||| |||||||||||||||||||||||| ||||| | | ||||||| || ||||||||||    
T  26876409 tttagtttaaaattttaaaactaacaatctcatacaaagattcgagattttttaagactttttt 26876472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 28594375 - 28594254
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggatttt 115  Q
    ||||||||||||||||| | ||||| |||||||||| ||| ||||  | |||||||||||| | | |||||| ||||||||   |  || ||||||||||    
T  28594375 atccgttggtattcaattaggatttctcacaacttataaaatgtctttcggtattcaaaaattgatagattttaatggattcttttatataatggatttt 28594276  T
Q  116 gtgagactttttagttgaaaat 137  Q
    |||||||||||||||| |||||    
T  28594275 gtgagactttttagttaaaaat 28594254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 30721485 - 30721540
Alignment:
Q  196 ttatactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  30721485 ttatactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 30721540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 10571251 - 10571320
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||| ||||| ||||||||||| ||||||||  |||||||||||||||||  |||||||||||||    
T  10571251 gtccaataaaatccggtggtattcaattaagattttgtacaacttaaaaattgtctattggtattcaaaa 10571320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 20040217 - 20040270
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  20040217 atactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 20040270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 20023121 - 20023069
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  20023121 tactccctccgtccctcaataagtgacacagttgacccaattacgcataccaa 20023069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 6828736 - 6828612
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtag 105  Q
    ||||||||| ||||  |||||||||||  ||||||| ||||||||||||||||||  ||| |||||||||   ||| ||||| ||||||||   ||  ||    
T  6828736 gtccaataaaatccagtggtattcaattgagattttgcacaacttaaaaattgtctattgatattcaaaattgtaaggattttaatggatt-gttatgag 6828638  T
Q  106 -aatggattttgtgagactttttagt 130  Q
     |||||||||||||||||||||||||    
T  6828637 taatggattttgtgagactttttagt 6828612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 14607361 - 14607410
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcatac 248  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  14607361 tactccctccgtcccttaataagtgacacagttgacccaattacgcatac 14607410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 1780948 - 1781000
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| |||||||| ||||||||    
T  1780948 tactccctccgtcccttaataagtgacacagttgacccaattactcataccaa 1781000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 9936691 - 9936739
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcata 247  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||    
T  9936691 tactccctccgtcccttaataagtgacacagttgacccaattacgcata 9936739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 27786362 - 27786474
Alignment:
Q  25 tattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgagactt 124  Q
    |||||||| | ||||| |||||||||| ||| ||||  | |||||||||||| | | |||||| ||||||||   |  | ||||||||||||||||||||    
T  27786362 tattcaattatgatttctcacaacttataaaatgtcattcggtattcaaaaattgatagattttaatggattcttttatggaatggattttgtgagactt 27786461  T
Q  125 tttagttgaaaat 137  Q
    ||||||| |||||    
T  27786462 tttagttaaaaat 27786474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 31190980 - 31191032
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| ||||||||| |||||||| |||||||||||||||||    
T  31190980 tactccctccgtcccttaataagtgatacagttgacccaattacgcataccaa 31191032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 19344501 - 19344554
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||||  || ||||| |||||||||||| |||||||||||||||||    
T  19344501 atactccctccgtctcttaataaatgacacagttgacccaattacgcataccaa 19344554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 1831611 - 1831559
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||| | | | |||||||||||||||||| |||||||||||||||||    
T  1831611 tactccctccttcctttaataagtgacacagttgacccaattacgcataccaa 1831559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 14057969 - 14057917
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| ||||||||||||| |||| ||||||| |||||||||    
T  14057969 tactccctccgtcccttaataagtgacacaattgacccaattatgcataccaa 14057917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 40317078 - 40317026
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||| | | | |||||||||||||||||| |||||||||||||||||    
T  40317078 tactccctccttcctttaataagtgacacagttgacccaattacgcataccaa 40317026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 41262932 - 41262984
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||  || ||||||||||||| |||| |||||||||||||||||    
T  41262932 tactccctccgtctcttaataagtgacacaattgacccaattacgcataccaa 41262984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 2276136 - 2276018
Alignment:
Q  19 cgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtg 118  Q
    |||||||||||||| || |||| |||  |||||  |||||||  ||| |||||||||   || |||||| ||||||||   | ||| |||||||||||||    
T  2276136 cgttggtattcaattaaaatttctcatgacttatgaattgtctattgatattcaaaagtctatagattttaatggattcttttgtataatggattttgtg 2276037  T
Q  119 agactttttagttgaaaat 137  Q
    ||| ||||||||| |||||    
T  2276036 agattttttagttaaaaat 2276018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 17518568 - 17518622
Alignment:
Q  6 gtccaataatatcc-gttggtattcaatcaagatttttcacaacttaaaaattgt 59  Q
    ||||||||| |||| | ||||||||||| |||||||| |||||||||||||||||    
T  17518568 gtccaataaaatcccggtggtattcaattaagattttgcacaacttaaaaattgt 17518622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 14633269 - 14633216
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||| |||||  ||| |||||||||||||||||| | |||||||||||||||    
T  14633269 atactctctccgccccttaataagtgacacagttgacctaattacgcataccaa 14633216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 41410463 - 41410515
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||| | | | |||||||||||||||||| ||||||||| |||||||    
T  41410463 tactccctccttcctttaataagtgacacagttgacccaattacgtataccaa 41410515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 65 - 200
Target Start/End: Complemental strand, 25712392 - 25712256
Alignment:
Q  65 ggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgagactttttagttgaaaattttaaaactaacaatctcacacaaata 164  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25712392 ggtattcaaaaacttaaagatttcaatggattacttggtagaatggattttgtgagactttttagttgaaaattttaaaactaacaatctcacacaaata 25712293  T
Q  165 cttgagatttcttgagac-ttttttactctcattata 200  Q
    | ||| ||||| | |||| ||||||||||||||||||    
T  25712292 cctgatatttcgtaagactttttttactctcattata 25712256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 6784029 - 6783863
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggat-tacctagtagaatggattttgtgag 120  Q
    |||||||| ||||||||||| |||||||||||||||||| |||| ||||||||||  || |||||||||||||| ||| || |||||||||||||||||     
T  6784029 tggtattccatcaagattttccacaacttaaaaattgtctcttgatattcaaaaatgtatagatttcaatggatatacttaatagaatggattttgtgaa 6783930  T
Q  121 actttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagacttttt 187  Q
    |||||||||||||||| || |||| ||||||||||| ||||| |  ||||||||||| |||||||||    
T  6783929 actttttagttgaaaaattcaaaattaacaatctcatacaaagatatgagatttcttaagacttttt 6783863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 43151314 - 43151485
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    |||||||||||||| | |||  |||||||||||||||||| |||||||| |||||  || |||||| |||||||||| | || | ||| |||||||||||    
T  43151314 tggtattcaatcaaaaatttatacaacttaaaaattgtcctttggtatttaaaaatatatagattttaatggattacttggtgggatgaattttgtgaga 43151413  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagact-tttttactc 192  Q
    |||||||||||||||||||||||||||||||||   ||||| || ||||||||| ||||||| |||||||||    
T  43151414 ctttttagttgaaaattttaaaactaacaatcttgtacaaagacatgagatttcatgagactctttttactc 43151485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 24574713 - 24574647
Alignment:
Q  82 agatttcaatggattacctagtagaatggattttgtgagactttttagttgaaaattttaaaactaa 148  Q
    ||||||||||||||||| |  || |||||||||||||||||||||||| ||||||||||||||||||    
T  24574713 agatttcaatggattacttgctataatggattttgtgagactttttaggtgaaaattttaaaactaa 24574647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 25713381 - 25713328
Alignment:
Q  7 tccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtc 60  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  25713381 tccaacaaaatccgttggtattcaatcaagatttttcacaacttaaaaattgtc 25713328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 42098425 - 42098477
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  42098425 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 42098477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 39338241 - 39338151
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggatt 96  Q
    ||||||||| ||||  |||||||||||  ||||||| ||||||||||||||||||  |||||||||||||   ||| ||||| ||||||||    
T  39338241 gtccaataaaatccagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggatt 39338151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 12948302 - 12948249
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||||  || |||||||||||||||||| |||||||||||||||||    
T  12948302 atactccctccgtctcttaataagtgacacagttgatccaattacgcataccaa 12948249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 29455505 - 29455558
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| |||||||||||||||||| ||| |||||||||||||    
T  29455505 atactccctccgtcccttaataagtgacacagttgacccatttacgcataccaa 29455558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 29720656 - 29720604
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||| ||||| ||| |||||||||||||||||| |||||||||||||||||    
T  29720656 tactccttccgtcccttaataagtgacacagttgacccaattacgcataccaa 29720604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 34263502 - 34263554
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| ||||||||| |||||||| |||||||||||||||||    
T  34263502 tactccctccgtcccttaataagtgatacagttgatccaattacgcataccaa 34263554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 46866607 - 46866552
Alignment:
Q  196 ttatactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||||| ||| ||||||||| ||| |||| |||||||||||||||||    
T  46866607 ttatactccctccgtcccttaataagtgatacaattgacccaattacgcataccaa 46866552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 16434654 - 16434707
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||| ||| ||| |||||||||||||||||| ||||||||| |||||||    
T  16434654 atactcccttcgtcccttaataagtgacacagttgacccaattacgtataccaa 16434707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 45134912 - 45134965
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||||||||||||||| ||||||| ||||  ||||| ||||||||||||    
T  45134912 tggtattcaatcaagattttttacaactttaaaaaagtcccatggtattcaaaa 45134965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 900886 - 900938
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||| ||||||| ||| |||||||||||||||||| | |||||||||||||||    
T  900886 tacttcctccgtcccttaataagtgacacagttgaccaaattacgcataccaa 900938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 29793176 - 29793228
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||| ||| ||| |||||||||||||||| | |||||||||||||||||    
T  29793176 tactcccttcgtcccttaataagtgacacagttaacccaattacgcataccaa 29793228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 34555412 - 34555360
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||  ||||||| |||||||||    
T  34555412 tactccctccgtcccttaataagtgacacagttggcccaattatgcataccaa 34555360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 49076224 - 49076276
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||||||| |||||||||   |||||| |||||||||||||||||    
T  49076224 tactccctccgttccttaataagtgatctagttgacccaattacgcataccaa 49076276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 50673938 - 50673886
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||  || || ||||||||||||||| |||||||||||||||||    
T  50673938 tactccctccgtcacttaacaagtgacacagttgatccaattacgcataccaa 50673886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 9484858 - 9484805
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||| |||| |||||| ||||||||||  |||||| |||||||||||||||||    
T  9484858 atacttcctcagttccttaataagtgacctagttgacccaattacgcataccaa 9484805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 24150760 - 24150707
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    |||||||||||  ||||||| || ||||||||||||||||  ||||||||||||    
T  24150760 tggtattcaattgagattttgcataacttaaaaattgtccactggtattcaaaa 24150707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 48927599 - 48927652
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||| | ||| ||||||||||  |||||| |||||||||||||||||    
T  48927599 atactccctccatcccttaataagtgacctagttgatccaattacgcataccaa 48927652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 10215975 - 10215915
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaa 76  Q
    |||| |||||||||||| | ||||| |||||||||| ||| ||||| | ||||||||||||    
T  10215975 atccattggtattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaa 10215915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 10225604 - 10225544
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaa 76  Q
    |||| |||||||||||| | ||||| |||||||||| ||| ||||| | ||||||||||||    
T  10225604 atccattggtattcaattaggatttctcacaacttataaaatgtccttgggtattcaaaaa 10225544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 12103665 - 12103717
Alignment:
Q  23 ggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||||||||||||||||  |||||||||  ||| | ||||||||||||    
T  12103665 ggtattcaatcaagatttttcatcacttaaaaaaagtctcatggtattcaaaa 12103717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 14750858 - 14750910
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| ||||  |||||||||||| ||| |||||||||||||    
T  14750858 tactccctccgtcccttaatacatgacacagttgatccagttacgcataccaa 14750910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 24574290 - 24574242
Alignment:
Q  145 ctaacaatctcacacaaatacttgagatttcttgagact-tttttactc 192  Q
    |||||||||||| ||||| || ||||||||||||||||| |||||||||    
T  24574290 ctaacaatctcatacaaagacctgagatttcttgagactctttttactc 24574242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 44276425 - 44276477
Alignment:
Q  23 ggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||||||||||||||||  |||||||||  ||| | ||||||||||||    
T  44276425 ggtattcaatcaagatttttcatcacttaaaaaaagtctcatggtattcaaaa 44276477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 45215306 - 45215214
Alignment:
Q  45 caacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgagactttttagttgaaaat 137  Q
    ||||||| ||| ||||  ||||||||||||||  |  |||||| ||| ||||   | ||||| |||||||||||||||||||||||| |||||    
T  45215306 caacttataaaatgtctattggtattcaaaaatcttgagattttaatagattcaattgtagagtggattttgtgagactttttagttaaaaat 45215214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 45926879 - 45926799
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggatt 96  Q
    ||||||||||||||||| | ||||| |||||||||| ||| | ||  | |||||||||||| | | |||||| ||||||||    
T  45926879 atccgttggtattcaattaggatttctcacaacttataaaatctcattcggtattcaaaaattgatagattttaatggatt 45926799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 31494395 - 31494566
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||  ||  ||||| |||||||||| | |||||||||||||||||| |    
T  31494395 tggtattcaatcaagattttttacaacttaaaaattgtctcttggtattaaaaaatgtattgattttaatggattacttggtagaatggattttgtgaaa 31494494  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagact-tttttactc 192  Q
    |||||| ||| |||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||    
T  31494495 ctttttggttaaaaattttaaaactaacaatctcatacaaaaacatgagatttcttgagactctttttactc 31494566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 36355412 - 36355246
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||||  || |||||| |||||||| | |  || ||||||||||||||||    
T  36355412 tggtattaaatcaagatttttctcaacttaaaaattgtcctttgttattcaaaaatgtatagattttaatggattccttgatataatggattttgtgaga 36355313  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagactttttt 188  Q
    ||||||||||||||||||||||||||||||||||| | ||| || ||||||||||| ||||| ||||    
T  36355312 ctttttagttgaaaattttaaaactaacaatctcatataaagacctgagatttcttaagactctttt 36355246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 24939578 - 24939415
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    ||||||||||| || |||||||| ||||||||||| |||  |||||||||||||| ||| |||||| |||| ||| | || |||||| ||||||||||||    
T  24939578 tggtattcaattaaaatttttcataacttaaaaatagtct-ttggtattcaaaaatttatagattttaatgaatttcttaatagaatagattttgtgaga 24939480  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagactttt 186  Q
    |||||||||||||||||||||||||||||||||||  |||| || ||||||||||||||||||||    
T  24939479 ctttttagttgaaaattttaaaactaacaatctcatgcaaagacatgagatttcttgagactttt 24939415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 48545746 - 48545583
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    |||||||| ||||||||||||| ||||||||||||| ||  ||||||||||||||  || ||||||||||||||| | || |  ||||||||||||||||    
T  48545746 tggtattccatcaagatttttcgcaacttaaaaattctc--ttggtattcaaaaatgtatagatttcaatggattccttattgaaatggattttgtgaga 48545649  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagacttttt 187  Q
    |||||||||| ||||||| |||||||||||| ||| ||||| ||||||||||||||||||| ||||    
T  48545648 ctttttagttaaaaatttcaaaactaacaatttcatacaaagacttgagatttcttgagacatttt 48545583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 47031401 - 47031566
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    |||||||| ||||| |  |||||||| |||||||||||| ||||||||| |||||  || ||||||||||| ||||| || ||||||||||||||| | |    
T  47031401 tggtattccatcaaaaaatttcacaatttaaaaattgtctcttggtatttaaaaatgtatagatttcaatgaattacttaatagaatggattttgtaaaa 47031500  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagacttttt 187  Q
    ||||||| ||  ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  47031501 ctttttaattataaattttaaaactaacaatctcatacaaagactcgagatttcttgagacttttt 47031566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 32630854 - 32631020
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    |||||||  ||||||||||||| ||||||||||||||||| |||||| | |||||  || |||||| |||||||| | |  || ||||||||||||||||    
T  32630854 tggtattatatcaagatttttctcaacttaaaaattgtcctttggtaataaaaaatgtatagattttaatggattccttgatataatggattttgtgaga 32630953  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagactttttt 188  Q
    |||||||||| |||||||||||||||||||||||| | ||  || ||||||||||| ||||| ||||    
T  32630954 ctttttagttaaaaattttaaaactaacaatctcatataaggacctgagatttcttaagactctttt 32631020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 36820138 - 36820085
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  36820138 atactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 36820085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 42678121 - 42678006
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    ||||||||||| ||||||| |  ||||||| ||| ||||  ||||||||||||||  |  |||||| ||||||||   | |||||||||||||| |||||    
T  42678121 tggtattcaattaagatttgtaccaacttataaaatgtctattggtattcaaaaatctgcagattttaatggattcttttgtagaatggattttatgaga 42678022  T
Q  122 ctttttagttgaaaat 137  Q
    |||||||||| |||||    
T  42678021 ctttttagttaaaaat 42678006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 16806947 - 16807001
Alignment:
Q  197 tatactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||||  || |||||||||||||||||| |||||||||||||||||    
T  16806947 tatactccctccgtcacttaataagtgacacagttgacccaattacgcataccaa 16807001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 40232490 - 40232440
Alignment:
Q  197 tatactccctccgttcctaaataagtgacacagttgagccaattacgcata 247  Q
    |||||||||||||| ||| |||||||||||||||||| |||||||||||||    
T  40232490 tatactccctccgtcccttaataagtgacacagttgacccaattacgcata 40232440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 3634354 - 3634475
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggatttt 115  Q
    ||||||||||||||||| ||||||| |||||||||| ||| |||   |||||||||||||| | |  |||||  |||||||   |  | |||||||||||    
T  3634354 atccgttggtattcaattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgattttgatggattcttttatggaatggatttt 3634453  T
Q  116 gtgagactttttagttgaaaat 137  Q
    | |||||||||||||| |||||    
T  3634454 gagagactttttagttaaaaat 3634475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 35265635 - 35265685
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcatac 248  Q
    ||||||| ||||| ||| |||||||||||||||||| ||||||||||||||    
T  35265635 atactccatccgtcccttaataagtgacacagttgatccaattacgcatac 35265685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 40097250 - 40097324
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggatt 96  Q
    |||||||||||  ||||||| ||||||||||||||||||  |||||||||||||   ||| ||||| ||||||||    
T  40097250 tggtattcaattcagattttgcacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggatt 40097324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 27621098 - 27621147
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcatac 248  Q
    |||||||||||| ||| |||||| ||||||||||| ||||||||||||||    
T  27621098 tactccctccgtcccttaataagcgacacagttgatccaattacgcatac 27621147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 35693632 - 35693681
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcata 247  Q
    ||||||||| ||| ||| |||||||||||||||||| |||||||||||||    
T  35693632 atactcccttcgtcccttaataagtgacacagttgacccaattacgcata 35693681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 39301173 - 39301120
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    |||||||||||  ||||||| ||||||||||||||||||  |||||||||||||    
T  39301173 tggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaa 39301120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 32345586 - 32345638
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||| ||||| ||| ||||||||||||||||||  ||||||||||||||||    
T  32345586 tactccatccgtcccttaataagtgacacagttgactcaattacgcataccaa 32345638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 38069312 - 38069264
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcata 247  Q
    ||||||||| || ||| |||||||||||||||||| |||||||||||||    
T  38069312 tactccctcagtcccttaataagtgacacagttgacccaattacgcata 38069264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 34115401 - 34115286
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    ||||||||||||||||||| |  ||||||| ||| |||   | ||||||||||||  |  |||||| ||||||||   | ||| | ||||||||||||||    
T  34115401 tggtattcaatcaagatttgtaccaacttataaaatgtttataggtattcaaaaatctgtagattttaatggattcttttgtatagtggattttgtgaga 34115302  T
Q  122 ctttttagttgaaaat 137  Q
    ||||||| ||||||||    
T  34115301 ctttttaattgaaaat 34115286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 46037284 - 46037163
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctag-tagaatggattt 114  Q
    |||||||||||||||||  |||||| |||  |||||  |||||||  |||||||||||||   || ||||||  ||||||| | | | | ||||||||||    
T  46037284 atccgttggtattcaattgagatttctcatgacttatgaattgtctattggtattcaaaagtctatagattttgatggatt-cttggatggaatggattt 46037186  T
Q  115 tgtgagactttttagttgaaaat 137  Q
    ||||||||||||||||| |||||    
T  46037185 tgtgagactttttagttaaaaat 46037163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 26651051 - 26651103
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||  ||||| |||||||||||| || ||||||||||||||    
T  26651051 tactccctccgtcccataataaatgacacagttgaccctattacgcataccaa 26651103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 37042489 - 37042437
Alignment:
Q  24 gtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaa 76  Q
    ||||||||| ||||||| |||||||||| ||||| || | |||||||||||||    
T  37042489 gtattcaattaagatttctcacaacttataaattatctcatggtattcaaaaa 37042437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 37649601 - 37649510
Alignment:
Q  45 caacttaaaaattgtcccttggtattcaaaaa-cttaaagatttcaatggattacctagtagaatggattttgtgagactttttagttgaaaa 136  Q
    ||||||| ||| ||||  |||||||||||||| |||||| |||| || |||||   | ||||| |||||||||||||||||||||||| ||||    
T  37649601 caacttataaaatgtctattggtattcaaaaatcttaaa-attttaacggattcttttgtagagtggattttgtgagactttttagttcaaaa 37649510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 9191287 - 9191466
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||||||||||  ||  |||||||||||||||| | ||||||||||||||||||||    
T  9191287 tggtattcaatcaagatttattacaacttaaaaattgtctcttggtattcaaaaatgtattgatttcaatggattacttggtagaatggattttgtgaga 9191386  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagact-tttttactctcattata 200  Q
     |||||| || |||||| ||||| ||||| ||||| ||||| || ||||||||||||||||| ||||||||||| |||||    
T  9191387 ttttttattttaaaattgtaaaagtaacattctcatacaaagacatgagatttcttgagactctttttactctcgttata 9191466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 49460076 - 49459916
Alignment:
Q  25 tattcaatcaagatttttcaca--acttaaaaattgtcccttggtattcaaaaa--cttaaagatttcaatggattacctagtagaatggattttgtgag 120  Q
    ||||||||||||||||||||||  |||||||| |  || ||||||||| |||||  | || ||||||||||||||||| |  || |||||||||||||||    
T  49460076 tattcaatcaagatttttcacacaacttaaaagtcatctcttggtattaaaaaaaacgtatagatttcaatggattacttgatataatggattttgtgag 49459977  T
Q  121 actttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgaga 181  Q
    ||||||||||||||||||||||||||| |||||||| | ||| || |||||| | ||||||    
T  49459976 actttttagttgaaaattttaaaactagcaatctcatataaagacctgagatatgttgaga 49459916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 1928348 - 1928224
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtag 105  Q
    ||||||||| ||||  |||||||||||  ||||||| ||||||||||||||||||  |||||||||||||   ||| ||||| ||||||||   ||  ||    
T  1928348 gtccaataaaatccagtggtattcaattcagattttgcacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggatt-gttatgag 1928250  T
Q  106 -aatggattttgtgagactttttagt 130  Q
     |||||||||||||||||||||||||    
T  1928249 taatggattttgtgagactttttagt 1928224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 5606198 - 5606250
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  5606198 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 5606250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 36402387 - 36402511
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtag 105  Q
    ||||||||| ||||  |||||||||||  ||||||| ||||||||||||||||||  |||||||||||||   ||| ||||| ||||||||     |       
T  36402387 gtccaataaaatccagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagt 36402486  T
Q  106 aatggattttgtgagactttttagt 130  Q
    |||||||||||||||||||||||||    
T  36402487 aatggattttgtgagactttttagt 36402511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 42657870 - 42657985
Alignment:
Q  21 ttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggatt-acctagtagaatggattttgtga 119  Q
    |||||||||||| | |||||||||||||||| ||| ||||| |||||||||||||| |  |||||||  |||||||   ||| | ||||||||||| |||    
T  42657870 ttggtattcaattaggatttttcacaacttataaaatgtccattggtattcaaaaa-tctaagattttgatggattcttcta-tggaatggattttatga 42657967  T
Q  120 gactttttagttgaaaat 137  Q
    |||||||||||| |||||    
T  42657968 gactttttagttaaaaat 42657985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 45299581 - 45299528
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||| ||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  45299581 atacttcctccgtcccttaataagtgacacagttgacccaattacgcataccaa 45299528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 44741604 - 44741556
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcata 247  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||    
T  44741604 tactccctccgtcccttaataagtgacacagttgatccaattacgcata 44741556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 48194740 - 48194861
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctag-tagaatggattt 114  Q
    |||||||||||||||||  |||||| |||  |||||  |||||||| |||||||||||||   || ||||||  ||||||| | | | | ||||||||||    
T  48194740 atccgttggtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggatt-cttggatggaatggattt 48194838  T
Q  115 tgtgagactttttagttgaaaat 137  Q
    ||||||||||||||||| |||||    
T  48194839 tgtgagactttttagttaaaaat 48194861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 2138835 - 2138888
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| | | ||||||| |||||||||| |||||||||||||||||    
T  2138835 atactccctccgtcctttaataagtaacacagttgacccaattacgcataccaa 2138888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 8250649 - 8250702
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| |||||||||||||||||| | ||||||| |||||||    
T  8250649 atactccctccgtcccttaataagtgacacagttgacctaattacgtataccaa 8250702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 9831430 - 9831499
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||| ||||  |||||||||||  ||||||| ||||||||| ||||||||  |||||||||||||    
T  9831430 gtccaataaaatccagtggtattcaattgagattttgcacaacttacaaattgtctattggtattcaaaa 9831499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 10124371 - 10124322
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcata 247  Q
    ||||||||||||| ||| ||||||||||||||||||  ||||||||||||    
T  10124371 atactccctccgtcccttaataagtgacacagttgactcaattacgcata 10124322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 26544134 - 26544081
Alignment:
Q  194 cattatactccctccgttcctaaataagtgacacagttgagccaattacgcata 247  Q
    ||||||||||||||||| | | |||||||||||||||||| || ||||||||||    
T  26544134 cattatactccctccgtcctttaataagtgacacagttgacccgattacgcata 26544081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 10100320 - 10100368
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcata 247  Q
    |||||||||||| ||| |||||||||||||||||| | |||||||||||    
T  10100320 tactccctccgtcccttaataagtgacacagttgacctaattacgcata 10100368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 29208895 - 29208963
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaa 74  Q
    ||||||||| ||||   ||||||||||  ||||||| ||||||||||||||||||  ||||||||||||    
T  29208895 gtccaataaaatccagaggtattcaattgagattttacacaacttaaaaattgtctattggtattcaaa 29208963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 7075142 - 7075185
Alignment:
Q  204 cctccgttcctaaataagtgacacagttgagccaattacgcata 247  Q
    ||||||| ||| |||||||||||||||||| |||||||||||||    
T  7075142 cctccgtcccttaataagtgacacagttgacccaattacgcata 7075185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 33243251 - 33243164
Alignment:
Q  9 caataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggatt 96  Q
    |||||| ||||  |||||||||||  |||||||  |||||||||||||||||  |||||||||||||   ||| ||||| ||||||||    
T  33243251 caataaaatccagtggtattcaattgagattttgtacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggatt 33243164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 33263424 - 33263337
Alignment:
Q  9 caataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggatt 96  Q
    |||||| ||||  |||||||||||  |||||||  |||||||||||||||||  |||||||||||||   ||| ||||| ||||||||    
T  33263424 caataaaatccagtggtattcaattgagattttgtacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggatt 33263337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 48203498 - 48203619
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctag-tagaatggattt 114  Q
    |||||||||||||||||  |||||| |||  |||||  |||||||| | |||||||||||   || ||||||  ||||||| | | | | ||||||||||    
T  48203498 atccgttggtattcaattgagatttctcatgacttatgaattgtccataggtattcaaaagtctatagattttgatggatt-cttggatggaatggattt 48203596  T
Q  115 tgtgagactttttagttgaaaat 137  Q
    ||||||||||||||||| |||||    
T  48203597 tgtgagactttttagttaaaaat 48203619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 10896956 - 10897009
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    |||||||||||  ||||||| | ||||||||||||||||  |||||||||||||    
T  10896956 tggtattcaattgagattttgcccaacttaaaaattgtctattggtattcaaaa 10897009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 27198421 - 27198542
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggatttt 115  Q
    ||||||||||||| |||  |||||| |||  ||||  ||| ||||| ||||||||||||||  || |||||| ||||||||   |  |||| | ||||||    
T  27198421 atccgttggtattgaattgagatttctcattacttctaaaatgtccattggtattcaaaaatatatagattttaatggattcttttatagagttgatttt 27198520  T
Q  116 gtgagactttttagttgaaaat 137  Q
    ||||||||| |||||| |||||    
T  27198521 gtgagacttcttagttaaaaat 27198542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 36035948 - 36035895
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||| ||||||| ||| ||||||||||  |||||| |||||||||||||||||    
T  36035948 atacttcctccgtcccttaataagtgacctagttgacccaattacgcataccaa 36035895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 19007425 - 19007393
Alignment:
Q  105 gaatggattttgtgagactttttagttgaaaat 137  Q
    ||||||||||||||||||||||||||| |||||    
T  19007425 gaatggattttgtgagactttttagttaaaaat 19007393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 23393493 - 23393441
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| ||||| ||||||||||||  ||||||||||| ||||    
T  23393493 tactccctccgtcccttaataaatgacacagttgactcaattacgcatgccaa 23393441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 31651708 - 31651760
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||  ||||| |||||||||||| || ||||||||||||||    
T  31651708 tactccctccgtcccataataaatgacacagttgaccctattacgcataccaa 31651760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 38806859 - 38806692
Alignment:
Q  22 tggtattcaatcaagatttttcac-aacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgag 120  Q
    |||||||||||||||||||||| | |||||||||||| ||  ||||||||||||||  || ||||||||||||||| | || || ||||||| |||||||    
T  38806859 tggtattcaatcaagatttttctcgaacttaaaaattatctgttggtattcaaaaatgtatagatttcaatggattccttactataatggatattgtgag 38806760  T
Q  121 actttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagactttttt 188  Q
    || ||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||| ||||||    
T  38806759 acattttagttgaaaattttaaaactaacaatctcatataaagacttgagattttttgagattttttt 38806692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 24296593 - 24296415
Alignment:
Q  9 caataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaat 108  Q
    |||||| ||| | ||||||||||| || |  ||||| ||||||||||| ||| |||| ||||||||||  || |||||| ||||||||   | |||||||    
T  24296593 caataaaatctgatggtattcaataaaaaaatttcataacttaaaaatagtctcttgatattcaaaaatgtatagattttaatggattctttggtagaat 24296494  T
Q  109 ggattttgtgagactttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagacttttt 187  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||  |||| || |||||||||||||||||||||    
T  24296493 ggattttgtaagactttttagttgaaaattttaaaactaacaatctcatgcaaagacatgagatttcttgagacttttt 24296415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 14723867 - 14723736
Alignment:
Q  51 aaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgagactttttagttgaaaattttaaaactaaca 150  Q
    |||||||||| ||||||||| |||||  || ||| ||||||||||||| | |||||| ||| ||||| ||||||||||||| ||| ||||||||||||||    
T  14723867 aaaaattgtctcttggtattaaaaaaaatatagacttcaatggattacttggtagaagggaatttgtaagactttttagttaaaatttttaaaactaaca 14723768  T
Q  151 atctcacacaaatacttgagatttcttgagac 182  Q
    |||||| ||||| || ||||||||||||||||    
T  14723767 atctcatacaaacacatgagatttcttgagac 14723736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 23185838 - 23185928
Alignment:
Q  7 tccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggatta 97  Q
    |||||||| ||| | |||||||||||||| |||||||||||||||||||||||| | ||||||| |||||  || |||| ||||| |||||    
T  23185838 tccaataaaatctggtggtattcaatcaaaatttttcacaacttaaaaattgtctcctggtattaaaaaatgtatagatctcaatagatta 23185928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 8502772 - 8502841
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||  |||||||| ||||    
T  8502772 gtccaataaaatccggtggtattcaattaagattttgcacaacttaaaaattgtctattggtatttaaaa 8502841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 14378486 - 14378539
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  14378486 atactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 14378539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 761811 - 761759
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  761811 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 761759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 21132728 - 21132780
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  21132728 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 21132780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 35142182 - 35142251
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||| ||||| | ||||||||| ||||||||  |||||||||||||||||  |||||||||||||    
T  35142182 gtccaataaaatccggtcgtattcaattaagattttgtacaacttaaaaattgtctattggtattcaaaa 35142251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 38842424 - 38842372
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| ||||||||| |||||||| |||||||||||||||||    
T  38842424 tactccctccgtcccttaataagtgatacagttgacccaattacgcataccaa 38842372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 30382615 - 30382528
Alignment:
Q  9 caataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggatt 96  Q
    |||||| ||||  |||||||||||  ||||||| ||||||||||||||||||  |||||||||||||   ||| ||||| ||||||||    
T  30382615 caataaaatccagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggatt 30382528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 23547326 - 23547277
Alignment:
Q  202 tccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||||||||||||||||||   |||||||||||||||    
T  23547326 tccctccgttccttaataagtgacacagttgacttaattacgcataccaa 23547277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 37567316 - 37567247
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||| ||||  | |||||||||  ||||||| ||||||||||||||||||  |||||||||||||    
T  37567316 gtccaataaaatccagtagtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaa 37567247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 23437613 - 23437665
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| ||||||||||||||||||  |||| |||||||||||    
T  23437613 tactccctccgtcccttaataagtgacacagttgattcaatgacgcataccaa 23437665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 30464693 - 30464645
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcata 247  Q
    |||||||||||| ||| |||||||||||||||||| | |||||||||||    
T  30464693 tactccctccgtcccttaataagtgacacagttgaccaaattacgcata 30464645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 4302736 - 4302662
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggatt 96  Q
    |||||||||||  ||||||| ||||||||||||||||||  || ||||||||||   ||| ||||| ||||||||    
T  4302736 tggtattcaattgagattttgcacaacttaaaaattgtctattagtattcaaaattgtaaggattttaatggatt 4302662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 44887514 - 44887567
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||  ||||| |||||||||||| || ||||||||||||||    
T  44887514 atactccctccgtcccataataaatgacacagttgaccctattacgcataccaa 44887567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 28583102 - 28583154
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| ||||  |||||||||||| ||| |||||||||||||    
T  28583102 tactccctccgtcccttaatacatgacacagttgacccagttacgcataccaa 28583154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 29708822 - 29708770
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| ||||||||||  ||||||  ||||||||||||||||    
T  29708822 tactccctccgtcccttaataagtgacctagttgactcaattacgcataccaa 29708770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 35164960 - 35165126
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    ||||||| |||||||||||||| ||||||||||||| ||| ||| ||||||||||  || |||||| |||| ||| | || || ||| ||||||||||||    
T  35164960 tggtattaaatcaagatttttctcaacttaaaaattatcctttgttattcaaaaatatatagattttaatgaattccttaatataatagattttgtgaga 35165059  T
Q  122 ctttttagttgaaaattttaaaactaacaatctcacacaaatacttgagatttcttgagactttttt 188  Q
    ||||||||||||||||||||||||||||||||||| | ||  |||||||||||||| ||||| ||||    
T  35165060 ctttttagttgaaaattttaaaactaacaatctcatataaggacttgagatttcttaagactctttt 35165126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 6142313 - 6142366
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  6142313 atactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 6142366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 6188466 - 6188515
Alignment:
Q  202 tccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  6188466 tccctccgttccttaataagtgacacagttgacccaattacgcataccaa 6188515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 995824 - 995772
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  995824 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 995772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 2398031 - 2397979
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  2398031 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 2397979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 16969640 - 16969588
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  16969640 tactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 16969588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 24798353 - 24798405
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  24798353 tactccctccgttccttaataagtgacacagttgattcaattacgcataccaa 24798405  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 17496134 - 17496187
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||| | ||| |||||||||||||||||| |||||||||||||||||    
T  17496134 atactccctccatcccttaataagtgacacagttgacccaattacgcataccaa 17496187  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 2667132 - 2667184
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| |||||||||||||||||| | |||||||||||||||    
T  2667132 tactccctccgtcccttaataagtgacacagttgacctaattacgcataccaa 2667184  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 7100314 - 7100435
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctag-tagaatggattt 114  Q
    |||||||||||||||||  |||||| |||  |||||  |||||||| |||||||||||||   || ||||||  ||||||| | | | | ||||||||||    
T  7100314 atccgttggtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggatt-cttggatggaatggattt 7100412  T
Q  115 tgtgagactttttagttgaaaat 137  Q
    ||||||||||||||||| |||||    
T  7100413 tgtgagactttttagttaaaaat 7100435  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 8794316 - 8794195
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctag-tagaatggattt 114  Q
    |||||||||||||||||  |||||| |||  |||||  |||||||| |||||||||||||   || ||||||  ||||||| | | | | ||||||||||    
T  8794316 atccgttggtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggatt-cttggatggaatggattt 8794218  T
Q  115 tgtgagactttttagttgaaaat 137  Q
    ||||||||||||||||| |||||    
T  8794217 tgtgagactttttagttaaaaat 8794195  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 29514832 - 29514882
Alignment:
Q  197 tatactccctccgttcctaaataagtgacacagttgagccaattacgcata 247  Q
    |||||||||||||| ||| ||||||||||||| |||| |||||||||||||    
T  29514832 tatactccctccgtcccttaataagtgacacaattgacccaattacgcata 29514882  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 9023102 - 9023049
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||| ||||||| ||| || ||||||||||||||| |||||||||||||||||    
T  9023102 atacttcctccgtcccttaacaagtgacacagttgatccaattacgcataccaa 9023049  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 2656477 - 2656529
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||| ||||||| | |||||||||||||||||| | |||||||||||||||    
T  2656477 tactccttccgttctttaataagtgacacagttgaccaaattacgcataccaa 2656529  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 2913158 - 2913106
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| ||| ||||||||||  |||||| |||||||||||||||||    
T  2913158 tactccctccgtcccttaataagtgacctagttgacccaattacgcataccaa 2913106  T

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Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 10643958 - 10643803
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttt--tcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagt 103  Q
    ||||||||| ||||  |||||||||||  |||||||  |||||||||||||||||||  |||||| ||||||   ||| ||||| ||||||||     |     
T  10643958 gtccaataaaatccagtggtattcaattgagattttgatcacaacttaaaaattgtctattggtaatcaaaattgtaaggattttaatggattgttgtga 10643859  T
Q  104 agaatggattttgtgagactttttagttgaaaattttaaaactaacaatctcacac 159  Q
      |||||||||||||||||||||||||  ||||| |    ||||||||||||||||    
T  10643858 gtaatggattttgtgagactttttagtgtaaaatgtacctactaacaatctcacac 10643803  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 7858302 - 7858249
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    |||||||||||  ||||||| ||||||||||||||||||  ||| |||||||||    
T  7858302 tggtattcaattgagattttgcacaacttaaaaattgtctattgatattcaaaa 7858249  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 31609535 - 31609506
Alignment:
Q  108 tggattttgtgagactttttagttgaaaat 137  Q
    ||||||||||||||||||||||||||||||    
T  31609535 tggattttgtgagactttttagttgaaaat 31609506  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 2141829 - 2141777
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||  || ||||| |||||||||||| ||||||||| |||||||    
T  2141829 tactccctccgtctcttaataaatgacacagttgacccaattacgtataccaa 2141777  T

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Target: scaffold0472 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 1813 - 1698
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggattttgtgaga 121  Q
    ||||||||||| ||||||| |  ||||||| ||| ||||  ||||||||||||||  |  |||||| ||||||||   | ||||||||||||||||||||    
T  1813 tggtattcaattaagatttgtaccaacttataaaatgtctattggtattcaaaaatctgcagattttaatggattcttttgtagaatggattttgtgaga 1714  T
Q  122 ctttttagttgaaaat 137  Q
    |||||||||| |||||    
T  1713 ctttttagttaaaaat 1698  T

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Target: scaffold0221 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 5638 - 5585
Alignment:
Q  198 atactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  5638 atactccctccgtcccttaataagtgacacagttgacccaattacgcataccaa 5585  T

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Target: scaffold0287 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 11731 - 11610
Alignment:
Q  16 atccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaaacttaaagatttcaatggattacctagtagaatggatttt 115  Q
    ||||||||||||||||| ||||||| |||||||||| ||| |||   |||||||||||||| | |  |||||  |||||||   |  | |||||||||||    
T  11731 atccgttggtattcaattaagatttctcacaacttataaaatgtattttggtattcaaaaattaattgattttgatggattcttttatggaatggatttt 11632  T
Q  116 gtgagactttttagttgaaaat 137  Q
    | |||||||||||||| |||||    
T  11631 gagagactttttagttaaaaat 11610  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 184227 - 184175
Alignment:
Q  199 tactccctccgttcctaaataagtgacacagttgagccaattacgcataccaa 251  Q
    |||||||||||| | | ||||||||| |||||||| |||||||||||||||||    
T  184227 tactccctccgtcctttaataagtgatacagttgacccaattacgcataccaa 184175  T

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Target: scaffold0202 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 16486 - 16417
Alignment:
Q  6 gtccaataatatccgttggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    ||||||||| ||||  |||||||||||  ||||||| || |||||||||||||||  || ||||||||||    
T  16486 gtccaataaaatccagtggtattcaattgagattttgcataacttaaaaattgtctattagtattcaaaa 16417  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 81710 - 81657
Alignment:
Q  22 tggtattcaatcaagatttttcacaacttaaaaattgtcccttggtattcaaaa 75  Q
    |||||||||||  ||||||| || ||||||||||||||| | ||||||||||||    
T  81710 tggtattcaattgagattttgcataacttaaaaattgtctcctggtattcaaaa 81657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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