View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6021_low_95 (Length: 247)
Name: NF6021_low_95
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_95 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11474548 - 11474785
Alignment:
| Q |
1 |
tgcatgaaaataggacaagaaaagaaagcatggtcaatgttaaaagatttcatgcttaaaacagcgaaaaaggacaagtcctagaaaactaacgccagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11474548 |
tgcatgaaaataggacaagaaaagaaagcatgttcaatgttaaaagatttcatgcttaaaatagtgaaaaaggacaagtcctagaaaactaacgttagag |
11474647 |
T |
|
| Q |
101 |
acctgtcaagatatgggtacctaagaaagaaatcgcttatgttgcatatttgattagaaataaagtcaagacaccaatcatggtacctgaataatgcctg |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
11474648 |
acctctcaagatatgggtacctaagaaagaaatcgtttatgttgcatattcgattagaaataaagtcaagacaccaatcattgtacttgaataatgcctg |
11474747 |
T |
|
| Q |
201 |
ctcttggcacatgatgagagaaaagcatgttgatgatg |
238 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
11474748 |
ctcttggcacatgacgggagaaaagcatattgatgatg |
11474785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University