View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6021_low_96 (Length: 244)
Name: NF6021_low_96
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6021_low_96 |
 | |
|
| [»] scaffold0176 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0176 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 28101 - 28335
Alignment:
| Q |
1 |
taaggaatgtttttaataatttgatttgtaaatagtaaataagggtactacagctaaagtataggtaatgttgttaacaactgatcattatccttatctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28101 |
taaggaatgtttttaataatttgatttgtaaatagtaaataagggtactacagctaaagtataggtaatgttgttaacaactgatcattatccttatctc |
28200 |
T |
|
| Q |
101 |
act-nnnnnnnnnnnctcatcatccttgtcaattatcatcatcttcaattgtgtctttg-tcatctataaatataagtgaaaatgattgctcaaaatata |
198 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28201 |
actaaaaaaaaaaaactcatcatcc-------ttatcatcatcttcaattgtgtctttgttcctctataaatataagtgaaaatgattgctcaaaatata |
28293 |
T |
|
| Q |
199 |
ttagcaacaatgtctttctcacatatgtttactgcttttctt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28294 |
ttagcaacaatgtctttctcacatatgtttactgcttttctt |
28335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34604 - 34836
Alignment:
| Q |
1 |
taaggaatgtttttaataatttgatttgtaaatagtaaataagggtactacagctaaagtataggtaatgttgttaacaactgatcattatccttatctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34604 |
taaggaatgtttttaataatttgatttgtaaatagtaaata-gggtactacagctaaagtataggtaatgttgttaacaactgatcattatccttatctc |
34702 |
T |
|
| Q |
101 |
actnnnnnnnnnnnctcatcatccttgtcaattatcatcatcttcaattgtgtctttgt-catctataaatataagtgaaaatgattgctcaaaatatat |
199 |
Q |
| |
|
| | |||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34703 |
agtaaaaaaaaaaactcatcatcctt-------atcatcatcttcaattgtgtctttgttcctctataaatataagtgaaaatgattgctcaaaatatat |
34795 |
T |
|
| Q |
200 |
tagcaacaatgtctttctcacatatgtttactgcttttctt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34796 |
tagcaacaatgtctttctcacatatgtttactgcttttctt |
34836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34167781 - 34168013
Alignment:
| Q |
1 |
taaggaatgtttttaataatttgatttgtaaatagtaaataagggtactacagctaaagtataggtaatgttgttaacaactgatcattatccttatctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34167781 |
taaggaatgtttttaataatttgatttgtaaatagtaaata-gggtactacagctaaagtataggtaatgttgttaacaactgatcattatccttatctc |
34167879 |
T |
|
| Q |
101 |
actnnnnnnnnnnnctcatcatccttgtcaattatcatcatcttcaattgtgtctttgt-catctataaatataagtgaaaatgattgctcaaaatatat |
199 |
Q |
| |
|
| | |||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34167880 |
agtaaaaaaaaaaactcatcatcctt-------atcatcatcttcaattgtgtctttgttcctctataaatataagtgaaaatgattgctcaaaatatat |
34167972 |
T |
|
| Q |
200 |
tagcaacaatgtctttctcacatatgtttactgcttttctt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34167973 |
tagcaacaatgtctttctcacatatgtttactgcttttctt |
34168013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 34205614 - 34205723
Alignment:
| Q |
132 |
ttatcatcatcttcaattgtgtctttgt-catctataaatataagtgaaaatgattgctcaaaatatattagcaacaatgtctttctcacatatgtttac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34205614 |
ttatcatcatcttcaattgtgtctttgttcctctataaatataagtgaaaatgattgctcaaaatatattagcaacaatgtctttctcacatatgtttaa |
34205713 |
T |
|
| Q |
231 |
tgcttttctt |
240 |
Q |
| |
|
|||||||||| |
|
|
| T |
34205714 |
tgcttttctt |
34205723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 34205521 - 34205611
Alignment:
| Q |
1 |
taaggaatgtttttaataatttgatttgtaaatagtaaataagggtactacagctaaagtatagg----taatgttgttaacaactgatcat |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
34205521 |
taaggaatgtttttaataatttgatttgtaaatagtaaata-gggtactacagctaaagtataggtaggtaatgttattaacaactcatcat |
34205611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University