View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6021_low_98 (Length: 243)

Name: NF6021_low_98
Description: NF6021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6021_low_98
NF6021_low_98
[»] chr7 (22 HSPs)
chr7 (21-232)||(29577709-29577920)
chr7 (23-231)||(29581879-29582087)
chr7 (21-231)||(8537956-8538166)
chr7 (31-231)||(8545563-8545763)
chr7 (27-231)||(8570237-8570441)
chr7 (27-231)||(8576252-8576456)
chr7 (68-213)||(8659330-8659475)
chr7 (28-225)||(7877777-7877974)
chr7 (31-231)||(8382914-8383114)
chr7 (27-231)||(8609843-8610047)
chr7 (77-213)||(8667395-8667531)
chr7 (77-228)||(10494415-10494566)
chr7 (27-216)||(8590564-8590753)
chr7 (68-228)||(1301427-1301587)
chr7 (28-231)||(8581627-8581830)
chr7 (95-231)||(27830913-27831049)
chr7 (140-231)||(8559372-8559463)
chr7 (77-228)||(8654426-8654577)
chr7 (21-53)||(8559248-8559280)
chr7 (81-213)||(13333512-13333644)
chr7 (65-215)||(8585760-8585910)
chr7 (68-213)||(8646844-8646989)
[»] chr8 (2 HSPs)
chr8 (25-231)||(12528428-12528634)
chr8 (95-213)||(43744810-43744928)
[»] chr2 (8 HSPs)
chr2 (77-231)||(7542202-7542356)
chr2 (77-231)||(14703384-14703538)
chr2 (77-231)||(12245444-12245598)
chr2 (68-213)||(16657573-16657718)
chr2 (74-181)||(17718039-17718146)
chr2 (134-213)||(16662048-16662127)
chr2 (165-228)||(43625476-43625539)
chr2 (77-213)||(12234665-12234801)
[»] chr1 (3 HSPs)
chr1 (68-228)||(4678599-4678759)
chr1 (68-231)||(34466831-34466994)
chr1 (72-213)||(15595005-15595146)
[»] chr4 (2 HSPs)
chr4 (77-210)||(9335950-9336083)
chr4 (127-231)||(35132474-35132578)
[»] chr6 (2 HSPs)
chr6 (155-213)||(11156324-11156382)
chr6 (155-228)||(11133048-11133121)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 29577920 - 29577709
Alignment:
Q  21 cctgacatatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29577920 cctgacatatagcatctatgtcaattgtggcctcaatgtcatatgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgg 29577821  T
Q  121 gttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcacca 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29577820 gttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggctcaccattttattatcgaagtcctctcctcctaggtgagtatcacca 29577721  T
Q  221 gcagtggccttt 232  Q
    ||||||||||||    
T  29577720 gcagtggccttt 29577709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 231
Target Start/End: Complemental strand, 29582087 - 29581879
Alignment:
Q  23 tgacatatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggt 122  Q
    ||||| || ||||||| ||||||||||| |||||||||| | ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29582087 tgacaaatggcatctacgtcaattgtggtctcaatgtcaaatgaaagtgtcctctttgccctctcacaagctgttctcagcttccttaaagcttttgggt 29581988  T
Q  123 tcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagc 222  Q
    ||  ||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||   ||||| |||||||||||||||||||||||||| |||||    
T  29581987 tcccactaatgtccaaattgttcttcctcttcaactcattcgcaaagtaattcaccattcggttatcaaagtcctctcctcctaggtgagtatcgccagc 29581888  T
Q  223 agtggcctt 231  Q
    |||||||||    
T  29581887 agtggcctt 29581879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 8537956 - 8538166
Alignment:
Q  21 cctgacatatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgg 120  Q
    ||||||||||||||||||| ||||||||||| ||| |||| || ||||| | ||| ||||||||||| || |||||||||| |||||| | ||||||||     
T  8537956 cctgacatatagcatctatatcaattgtggcttcagtgtcgtaagaaagcgacctttttgccctctcgcatgcagttctcaacttcctcagagcttttga 8538055  T
Q  121 gttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcacca 220  Q
     ||   ||||||||| || ||||| ||||||||||| ||||||||||| || |||||||    |||||| |||||||||||||| ||||||||||| ||     
T  8538056 atttccactaatgtcaactttgtttttcctcttcaattcattcacaaaatgattcaccaaccgattatcaaagtcctctcctccaaggtgagtatctccg 8538155  T
Q  221 gcagtggcctt 231  Q
    |||||||||||    
T  8538156 gcagtggcctt 8538166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 231
Target Start/End: Original strand, 8545563 - 8545763
Alignment:
Q  31 agcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaacta 130  Q
    |||||||| |||||||||||||||| |||| || ||||||| ||| |||||| ||||||| |||||||||| | |||| || |||| |||||||  ||||    
T  8545563 agcatctaggtcaattgtggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggcagttctcaacctcctcaaggcttctgggttccgacta 8545662  T
Q  131 atgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcct 230  Q
    || ||| |||||||||||||||| ||||| ||||||||||  ||||||||| | ||||| ||||| || || ||||||| ||| || |||||||||||||    
T  8545663 atatcctcattgttcttcctcttgaactccttcacaaagtaattcaccattctgttatcaaagtcttcaccgcctaggtaagtgtctccagcagtggcct 8545762  T
Q  231 t 231  Q
    |    
T  8545763 t 8545763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 8570237 - 8570441
Alignment:
Q  27 atatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaa 126  Q
    ||||||||||||  ||||||||||||||| | ||||| ||||||| ||| ||||||||||||||||| ||||| | | |||| || ||||||||||||      
T  8570237 atatagcatctagctcaattgtggcctcagtatcatatgaaagtgtcctttttgccctctcacaagctgttcttaacctcctcaaggcttttgggttcct 8570336  T
Q  127 actaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtg 226  Q
    |||||| ||| | ||||||||| |||| ||||  |||||||||||  ||| |||| | ||||| || || || ||||| |||||||| || |||||||||    
T  8570337 actaatatcctcgttgttcttcttcttgaacttcttcacaaagtgagtcaacattctgttatcaaaatcttcacctcccaggtgagtgtctccagcagtg 8570436  T
Q  227 gcctt 231  Q
    |||||    
T  8570437 gcctt 8570441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 8576252 - 8576456
Alignment:
Q  27 atatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaa 126  Q
    ||||||||||||  ||||||||||| ||| ||||||| ||||||| ||| |||||| | |||||||||||||||| | ||||||| |||||||  |||      
T  8576252 atatagcatctagttcaattgtggcatcagtgtcatatgaaagtgtcctttttgccttttcacaagcagttctcaacctccttaaggcttttgaattctc 8576351  T
Q  127 actaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtg 226  Q
    |||||| ||| | |||| |||  || | ||||| || |||||||| | ||||||| | ||||| ||||| |  |||||||||||||| || || ||||||    
T  8576352 actaatatcctctttgtacttgttcctgaactccttaacaaagtgatccaccattatgttatcaaagtcttggcctcctaggtgagtgtctccggcagtg 8576451  T
Q  227 gcctt 231  Q
    |||||    
T  8576452 gcctt 8576456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 8659330 - 8659475
Alignment:
Q  68 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaa 167  Q
    |||| |||||||||||||||||| |||||||||| | ||||||| | |||||||||   |||||||||||| || |||||| | || ||||| |  ||||    
T  8659330 agtgtcctctttgccctctcacaggcagttctcaacctccttaaggattttgggttaccactaatgtccactttattcttctttttgaactcctctacaa 8659429  T
Q  168 agtggttcaccattttattatcgaagtcctctcctcctaggtgagt 213  Q
    ||| |||||||||| |  |||| |||||||||||||| ||||||||    
T  8659430 agtagttcaccattctgctatcaaagtcctctcctccaaggtgagt 8659475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 7877974 - 7877777
Alignment:
Q  28 tatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaa 127  Q
    ||||||||||||||||||||| | |||| | ||| | || |||| ||| || ||||||||||| |||||||||| | |||| |  ||  | |||||   |    
T  7877974 tatagcatctatgtcaattgtagtctcagtatcaaatgacagtgtccttttagccctctcacatgcagttctcaacctcctaagggccctcgggtttcca 7877875  T
Q  128 ctaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagt 225  Q
    | ||||||||| || ||||||||||| |||||  |||| || ||||||| |||| | ||||| ||||||||||| |||||||||||||| || |||||    
T  7877874 ccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagt 7877777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 8383114 - 8382914
Alignment:
Q  31 agcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaacta 130  Q
    ||||||||||||||| | ||||||||| ||| | ||||||| ||| ||||||||||| ||||| ||||| | | | || | ||| |||||||||  ||||    
T  8383114 agcatctatgtcaatcgcggcctcaatatcaaatgaaagtgtcctttttgccctctcgcaagccgttcttaaccttctaagagcctttgggttcccacta 8383015  T
Q  131 atgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcct 230  Q
    ||||||  ||| | ||||||||| ||||| |  |||||||  ||||| ||| | ||||| ||||| || |||||||| ||||| || || ||||||||||    
T  8383014 atgtccttattatgcttcctcttgaactcgtcaacaaagtacttcacgattctgttatctaagtcttcacctcctagatgagtgtctccggcagtggcct 8382915  T
Q  231 t 231  Q
    |    
T  8382914 t 8382914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 8609843 - 8610047
Alignment:
Q  27 atatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaa 126  Q
    |||||||||| || ||||||||||||||  ||||| | ||||||| |||||||||||||||||||||||| |||| | |||| | |||  | | ||||      
T  8609843 atatagcatcaatatcaattgtggcctccgtgtcaaatgaaagtgtcctctttgccctctcacaagcagtcctcaacctcctaagagccctcgagttccc 8609942  T
Q  127 actaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtg 226  Q
    ||| || ||       | |||||| || ||||| ||||||||||| || |||||| | | ||| |||||||||||||| ||||||||||| ||||||||     
T  8609943 actgatatcttttgaatgcttccttttgaactccttcacaaagtgattaaccattctgtgatcaaagtcctctcctccaaggtgagtatctccagcagta 8610042  T
Q  227 gcctt 231  Q
    |||||    
T  8610043 gcctt 8610047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 8667395 - 8667531
Alignment:
Q  77 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 176  Q
    |||||||||||||| |||||||||| | ||||||| | ||||||||||  ||| |||||||| || |||||| | || ||||| |  ||||| | |||||    
T  8667395 tttgccctctcacaggcagttctcaacctccttaaggattttgggttctgactgatgtccactttattcttcttttttaactcctcaacaaaatagttca 8667494  T
Q  177 ccattttattatcgaagtcctctcctcctaggtgagt 213  Q
    ||||| | |||||||||||||| || || ||||||||    
T  8667495 ccattctgttatcgaagtcctcgcccccaaggtgagt 8667531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 228
Target Start/End: Complemental strand, 10494566 - 10494415
Alignment:
Q  77 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 176  Q
    |||||||||||||| |||||||||| | ||||||| | |||||| |||  ||| |||||||| || |||||| | || ||||| |  ||||| |  ||||    
T  10494566 tttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaataattca 10494467  T
Q  177 ccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggc 228  Q
    ||||| | ||||||||||||||||| || |||||||| | ||| ||||||||    
T  10494466 ccattctgttatcgaagtcctctcccccaaggtgagtgttacctgcagtggc 10494415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 8590564 - 8590753
Alignment:
Q  27 atatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaa 126  Q
    |||||||||||||| | ||||| |||||| | ||||| || |||| ||| || |||||||||||||| ||| ||| | |||| | |||  ||| ||||      
T  8590564 atatagcatctatgccgattgttgcctcagtatcatatgacagtgtccttttagccctctcacaagctgttttcaacctcctaagagcccttgcgttccc 8590663  T
Q  127 actaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatc 216  Q
    ||| |  ||||| || ||||||||| | ||||| ||||| || ||||  |||||| | ||||| |||||||||||||||||||| |||||    
T  8590664 acttaaatccactttattcttcctcctaaactccttcaccaaatggtgaaccattctgttatcaaagtcctctcctcctaggtgggtatc 8590753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 228
Target Start/End: Original strand, 1301427 - 1301587
Alignment:
Q  68 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaa 167  Q
    |||| ||| |||||||||||||| ||| |||||| | ||||||| | |||  ||||   |||||||||||| || |||||| |  | ||||| |  ||||    
T  1301427 agtgtcctttttgccctctcacacgcaattctcaacctccttaaggatttctggttaccactaatgtccactttattcttctttctgaactcctctacaa 1301526  T
Q  168 agtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggc 228  Q
    ||| | |||||||| ||||||| |||||||||||||| ||||||||||  ||| |||||||    
T  1301527 agtagctcaccattctattatcaaagtcctctcctccaaggtgagtatttccaccagtggc 1301587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 8581627 - 8581830
Alignment:
Q  28 tatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaa 127  Q
    ||||| ||||| |||||||||||||||| ||||||| ||||||| ||| || || |||||||||||||| |||| | | || |  |||||||| ||   |    
T  8581627 tatagaatctaggtcaattgtggcctcagtgtcatatgaaagtgtccttttcgctctctcacaagcagtcctcaaccttctaatggcttttggatttcca 8581726  T
Q  128 ctaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtgg 227  Q
     |||| ||| | || |  || ||||| |||||   ||||||||| ||||||||| | ||||| || || || ||||| |||||||| || ||||||||||    
T  8581727 ataatctcctctttatgttttctcttgaactccgacacaaagtgattcaccattctgttatcaaaatcttcccctcccaggtgagtgtctccagcagtgg 8581826  T
Q  228 cctt 231  Q
    ||||    
T  8581827 cctt 8581830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 231
Target Start/End: Complemental strand, 27831049 - 27830913
Alignment:
Q  95 gttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagt 194  Q
    ||||||||| |||| || ||| ||||||||  ||||||||||||  | |||||| |||| ||| | | |||||| | |||||||||  ||||||| ||||    
T  27831049 gttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaaatagttcaccatcctattatcaaagt 27830950  T
Q  195 cctctcctcctaggtgagtatcaccagcagtggcctt 231  Q
    ||||||| || |||||||| |  |||||||| |||||    
T  27830949 cctctccaccaaggtgagtgtttccagcagttgcctt 27830913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 8559372 - 8559463
Alignment:
Q  140 ttgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 231  Q
    |||||||||||||  ||||| || |||||||| ||||||||| | ||||| |||||||||||||| ||||| || || || | |||||||||    
T  8559372 ttgttcttcctctcaaactcttttacaaagtgtttcaccattctgttatcaaagtcctctcctccgaggtgtgtgtctccggaagtggcctt 8559463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 228
Target Start/End: Original strand, 8654426 - 8654577
Alignment:
Q  77 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 176  Q
    |||||||||||||| |||||||||| | ||||||| | |||||||||    ||||| ||||| || |||||| | || ||||| |  ||||||| || ||    
T  8654426 tttgccctctcacaggcagttctcaacctccttaaggattttgggttaccgctaatttccactttattcttctttttgaactcctctacaaagtagtaca 8654525  T
Q  177 ccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggc 228  Q
    ||||| | ||||| ||||| ||||| |||||||| || |  |||||||||||    
T  8654526 ccattctgttatcaaagtcttctccccctaggtgcgtgtttccagcagtggc 8654577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 8559248 - 8559280
Alignment:
Q  21 cctgacatatagcatctatgtcaattgtggcct 53  Q
    |||||||||||||||||||||||||||||||||    
T  8559248 cctgacatatagcatctatgtcaattgtggcct 8559280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 13333644 - 13333512
Alignment:
Q  81 ccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccat 180  Q
    |||||||||| |||||||||| | ||||||| | ||||||||||  ||| || || || || |||||| | || ||||| |  ||||| | |||||||||    
T  13333644 ccctctcacaggcagttctcaacctccttaaggattttgggttcccactgatatcgacgttattcttctttttgaactcctcaacaaaatagttcaccat 13333545  T
Q  181 tttattatcgaagtcctctcctcctaggtgagt 213  Q
    | | ||||||||||| ||||| || ||||||||    
T  13333544 tctgttatcgaagtcttctcccccaaggtgagt 13333512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 8585910 - 8585760
Alignment:
Q  65 gaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattca 164  Q
    ||||||| ||| |||||| | ||||| || ||||| | |  ||| |||||| ||||||||  | |||| |||||||||||||| ||||| || || |  |    
T  8585910 gaaagtgtcctttttgccttttcacatgccgttcttaaccgcctcaaagctcttgggttcttagtaatatccacattgttctttctcttaaattcctcaa 8585811  T
Q  165 caaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtat 215  Q
    |||||| ||||| |||| | ||||| |||||| |||| || ||||||||||    
T  8585810 caaagtagttcaacattctgttatcaaagtcccctcccccaaggtgagtat 8585760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 8646844 - 8646989
Alignment:
Q  68 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaa 167  Q
    |||| ||| ||||| ||||| || || ||||||| | ||||||| ||| ||| |||   | |||||||||| ||||||||| | || || || |   |||    
T  8646844 agtgtcctttttgctctctcgcatgccgttctcaacctccttaaggctcttgagtttccagtaatgtccaccttgttcttcttgttaaattcttgtgcaa 8646943  T
Q  168 agtggttcaccattttattatcgaagtcctctcctcctaggtgagt 213  Q
    |||||| ||||||| || |||| |||||||||||||| ||||||||    
T  8646944 agtggtccaccattctactatcaaagtcctctcctccgaggtgagt 8646989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 12528428 - 12528634
Alignment:
Q  25 acatatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttc 124  Q
    |||||||||||||||||||||||| |||||  | || || ||||||| ||| || ||| |||| ||   ||||||||   ||||||  ||||||| ||||    
T  12528428 acatatagcatctatgtcaattgtagcctctgtatcgtatgaaagtgtccttttcgccttctcgcagttagttctcaatctccttagggcttttgagttc 12528527  T
Q  125 aaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcag 224  Q
      | ||||||| || |||||||||||||| ||||| ||||||||||| |||||||||  |||||| |||||||||||||| |||||||| || || ||||    
T  12528528 ccaataatgtcaactttgttcttcctcttaaactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctccggcag 12528627  T
Q  225 tggcctt 231  Q
    |||||||    
T  12528628 tggcctt 12528634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 43744810 - 43744928
Alignment:
Q  95 gttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagt 194  Q
    ||||||| | ||||||| ||| |||||||   | |||||||||| ||||||||| |||| ||||| |   | |||| |||||||||  ||||||| || |    
T  43744810 gttctcaacctccttaatgctcttgggtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagttcaccatcctattatcaaaat 43744909  T
Q  195 cctctcctcctaggtgagt 213  Q
    |||||||||| ||||||||    
T  43744910 cctctcctccgaggtgagt 43744928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 7542202 - 7542356
Alignment:
Q  77 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 176  Q
    ||||||||||||||||||||||||| | |||| || |||||||| |||  |||||||||||| |||||||| ||||| ||||| |  ||||||| ||||     
T  7542202 tttgccctctcacaagcagttctcaacctcctcaaggcttttggattcccactaatgtccactttgttctttctcttgaactcttgtacaaagtagttcg 7542301  T
Q  177 ccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 231  Q
    ||||| ||||||| ||||| ||||| || |||||||| |  ||||||||||||||    
T  7542302 ccattctattatcaaagtcttctccaccaaggtgagtgttgccagcagtggcctt 7542356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 14703384 - 14703538
Alignment:
Q  77 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 176  Q
    ||||||||||| ||||| |||||||   ||||||| |||||||| ||   |||||||||||   |||| || ||||| ||||| |  ||||||| |||||    
T  14703384 tttgccctctcgcaagcggttctcaagctccttaaggcttttggatttccactaatgtccaatctgttttttctcttgaactcttgaacaaagtagttca 14703483  T
Q  177 ccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 231  Q
    ||||| | ||||||||||||||||| || |||||||| |  |||||||| |||||    
T  14703484 ccattctgttatcgaagtcctctcccccgaggtgagtgtttccagcagtagcctt 14703538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 12245598 - 12245444
Alignment:
Q  77 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 176  Q
    |||||||||||||||||||||||||   |||| || |||||||   |   |||||| ||||  |||||||| ||||| ||||| |   |||||| ||| |    
T  12245598 tttgccctctcacaagcagttctcaatctcctcaaggcttttgaacttgcactaatatccaatttgttctttctcttgaactcctgtgcaaagtagttta 12245499  T
Q  177 ccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 231  Q
    ||||| ||||||| || ||||||||||| |||||||| |  ||||||||||||||    
T  12245498 ccattctattatcaaaatcctctcctccaaggtgagtgtttccagcagtggcctt 12245444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 213
Target Start/End: Complemental strand, 16657718 - 16657573
Alignment:
Q  68 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaa 167  Q
    |||| |||||||||||||||||| |||||||||| | |||| || ||| ||| ||||  ||| |||||||| || |||||| | |  ||||| |  ||||    
T  16657718 agtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttgagttcccacttatgtccaccttattcttcttttgaaactcctctacaa 16657619  T
Q  168 agtggttcaccattttattatcgaagtcctctcctcctaggtgagt 213  Q
    ||| ||||||| || | ||||| ||||||||||| || ||||||||    
T  16657618 agtagttcaccgttctgttatcaaagtcctctcccccaaggtgagt 16657573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 17718146 - 17718039
Alignment:
Q  74 ctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggt 173  Q
    ||||| ||||||||||||||||| |||| |||| | | |||| |||||||   ||||||||||   |||||||| ||||| ||||| |  ||||||||||    
T  17718146 ctcttcgccctctcacaagcagtcctcaacttcataagagctcttgggttgccactaatgtccttcttgttctttctcttgaactcttgaacaaagtggt 17718047  T
Q  174 tcaccatt 181  Q
    ||||||||    
T  17718046 tcaccatt 17718039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 16662127 - 16662048
Alignment:
Q  134 tccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagt 213  Q
    ||||| ||||||||||| || || || |||||||||| ||||| |||| | ||||| ||||||||||| || ||||||||    
T  16662127 tccactttgttcttcctattaaattctttcacaaagtagttcaacattctgttatcaaagtcctctcccccgaggtgagt 16662048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 43625476 - 43625539
Alignment:
Q  165 caaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggc 228  Q
    |||||| |||||||||| ||| ||| |||||||||||||| |||||||| |  |||||||||||    
T  43625476 caaagtagttcaccattctatcatcaaagtcctctcctccaaggtgagtgtttccagcagtggc 43625539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 12234665 - 12234801
Alignment:
Q  77 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 176  Q
    ||||||||||||||||||||||| | | |||| || |||||||| ||   ||| |||||||| || ||||| || || ||||| |   ||| || ||| |    
T  12234665 tttgccctctcacaagcagttcttaacctcctcaaggcttttggatttccactcatgtccacttttttctttctattgaactcttgagcaaggtagttta 12234764  T
Q  177 ccattttattatcgaagtcctctcctcctaggtgagt 213  Q
    ||||| | ||||| ||||||||||| || ||||||||    
T  12234765 ccattctgttatcaaagtcctctcccccgaggtgagt 12234801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 4678759 - 4678599
Alignment:
Q  68 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaa 167  Q
    |||| ||||||||||||||| || |||||||||| | ||||||| | ||||| ||||  ||||||||||||||| |||||| | || ||||| |  ||||    
T  4678759 agtgtcctctttgccctctcgcaggcagttctcaacctccttaagggttttgcgttcttactaatgtccacattattcttctttttgaactcctctacaa 4678660  T
Q  168 agtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggc 228  Q
    ||| |||||||||| | ||||| ||||||||||| ||||||||||| |  |||||||||||    
T  4678659 agtagttcaccattctgttatcaaagtcctctccacctaggtgagtgtttccagcagtggc 4678599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 34466994 - 34466831
Alignment:
Q  68 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaa 167  Q
    |||| |||||||||  |||| || |||||||||| | |||| |||||| | |||||   |||||| |||  ||| | ||||||||| ||||| ||  |||    
T  34466994 agtgtcctctttgcattctcgcacgcagttctcaacctcctcaaagctctagggtttccactaatatccttattatgcttcctcttgaactcctttgcaa 34466895  T
Q  168 agtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctt 231  Q
    |||||||| ||||| ||||||| |||||||||| ||| |||||||| | ||||| |||||||||    
T  34466894 agtggttcgccattctattatcaaagtcctctcgtccgaggtgagtgttaccagaagtggcctt 34466831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 213
Target Start/End: Original strand, 15595005 - 15595146
Alignment:
Q  72 ccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtg 171  Q
    |||| |||||||| || || ||||||||||   |||| || ||  ||||||||  | |||| ||||| ||||||||| |||| || || | | ||||||     
T  15595005 ccctttttgccctttcgcacgcagttctcaatctcctcaaggcccttgggttcccagtaatatccactttgttcttcgtcttgaattcctgcgcaaagta 15595104  T
Q  172 gttcaccattttattatcgaagtcctctcctcctaggtgagt 213  Q
    ||| |||||| | ||||| |||||||||||||| ||||||||    
T  15595105 gttgaccattctgttatcaaagtcctctcctccaaggtgagt 15595146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 9336083 - 9335950
Alignment:
Q  77 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggttca 176  Q
    |||||||||||||| |||||||||| | ||||||| | ||||||||||    | |||||||| || |||||| | || ||||| | |||||| | ||| |    
T  9336083 tttgccctctcacaggcagttctcaacctccttaaggattttgggttctgcttgatgtccactttattcttcttttttaactcttccacaaaatagttaa 9335984  T
Q  177 ccattttattatcgaagtcctctcctcctaggtg 210  Q
    ||||| | ||||| |||||||| ||||| |||||    
T  9335983 ccattctgttatcaaagtcctcgcctccaaggtg 9335950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 35132474 - 35132578
Alignment:
Q  127 actaatgtccacattgttcttcctcttcaactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtg 226  Q
    ||||||||| || |||||||| ||||| ||||| |  ||||||| |||||||||| | ||||| ||||||||||| || || ||||| |  || ||||||    
T  35132474 actaatgtctactttgttctttctcttgaactcttgtacaaagtagttcaccattctgttatcaaagtcctctccaccgagatgagtgtttccggcagtg 35132573  T
Q  227 gcctt 231  Q
    |||||    
T  35132574 gcctt 35132578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 11156324 - 11156382
Alignment:
Q  155 aactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagt 213  Q
    |||||||||||||| |||||||||||| ||||||| ||||| | ||| || ||||||||    
T  11156324 aactcattcacaaaatggttcaccattgtattatcaaagtcttgtcccccaaggtgagt 11156382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 11133048 - 11133121
Alignment:
Q  155 aactcattcacaaagtggttcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggc 228  Q
    ||||| ||||| || |||||||||||| | ||||| ||||| | ||| || ||||||||||| |||||||||||    
T  11133048 aactctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagcagtggc 11133121  T

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