View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6022_high_1 (Length: 1049)
Name: NF6022_high_1
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 611; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 385 - 1031
Target Start/End: Original strand, 32833617 - 32834263
Alignment:
| Q |
385 |
gaaaacagttagaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaaagtcactcactatataataatgat |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32833617 |
gaaaacagttagaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaacgtcactcactatataataatgat |
32833716 |
T |
|
| Q |
485 |
cagtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactc |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833717 |
cagtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactc |
32833816 |
T |
|
| Q |
585 |
tcaagatcctccatcctcacccaaaaacaaacctccatttgattcgcaacaaccacattcatcttctgcaccggaacaatctgcctctggatcaaagaaa |
684 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
32833817 |
tcaagatcctccatcctcacccaaaaacaaacctccatctgattcgcaacaaccacattcatcttctgcaccggaacaatctgccaccggatcaaagaaa |
32833916 |
T |
|
| Q |
685 |
cctgcctccactacgggacaagatgcctctgcaaccaagcaaactgcctcctcatcgggaaaacgtgtctccggcggactgacaaaactactctctgaaa |
784 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833917 |
cctgcctccactacgggacaagatgcctctgcaaccaagcaaactccctcctcatcgggaaaatgtgtctccggcggactgacaaaactactctctgaaa |
32834016 |
T |
|
| Q |
785 |
cgggaaaagatgcctctacagcagaagaaggagcctctacacggggaaaagaatcttccacacaagaaaagtcaccatcggcaccggaacaaaaaccacc |
884 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32834017 |
cgggaaaagatgcctctacagcagaagaaggagcctctacaccgggaaaagaatcttccacacaagaaaagtcaccatcagcaccggaacaaaaaccacc |
32834116 |
T |
|
| Q |
885 |
ttctgctactggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgctcctttagcc |
984 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32834117 |
ttctgctactggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgctcctttagcc |
32834216 |
T |
|
| Q |
985 |
agaactcatcgacttccagggtttctctcatcaggcgagtctgctga |
1031 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32834217 |
agaactcatcgacttccagggtttctctcatcaggcaagtctgctga |
32834263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 385 - 1031
Target Start/End: Original strand, 32840031 - 32840677
Alignment:
| Q |
385 |
gaaaacagttagaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaaagtcactcactatataataatgat |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32840031 |
gaaaacagttagaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaacgtcactcactatataataatgat |
32840130 |
T |
|
| Q |
485 |
cagtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactc |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32840131 |
cagtatcacaaatcaatcataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactc |
32840230 |
T |
|
| Q |
585 |
tcaagatcctccatcctcacccaaaaacaaacctccatttgattcgcaacaaccacattcatcttctgcaccggaacaatctgcctctggatcaaagaaa |
684 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32840231 |
tcaagatcctccatcctcacccaaaaacaaacctccatctgattcgcaacaaccacattcatcttctgcaccggaacaatctgcctccggatcaaagaaa |
32840330 |
T |
|
| Q |
685 |
cctgcctccactacgggacaagatgcctctgcaaccaagcaaactgcctcctcatcgggaaaacgtgtctccggcggactgacaaaactactctctgaaa |
784 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32840331 |
cctgcctccagtacgggacaagatgcctctgcaaccaagcaaactgcctcctcatcggcaaaacgtgtctccggcggactgacaaaactactctctgaaa |
32840430 |
T |
|
| Q |
785 |
cgggaaaagatgcctctacagcagaagaaggagcctctacacggggaaaagaatcttccacacaagaaaagtcaccatcggcaccggaacaaaaaccacc |
884 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32840431 |
cgggaaaagatgcctctacagcagaagaaggtgcctctacaccgggaaaagaatcttccacacaagaaaagtcaccatcggcaccggaacaaaaaccacc |
32840530 |
T |
|
| Q |
885 |
ttctgctactggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgctcctttagcc |
984 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32840531 |
ttctgctactgaatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcagatgctcctttagcc |
32840630 |
T |
|
| Q |
985 |
agaactcatcgacttccagggtttctctcatcaggcgagtctgctga |
1031 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32840631 |
agaactcatcgacttccagggtttctctcatcaggcgagtctgctga |
32840677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 32833239 - 32833586
Alignment:
| Q |
11 |
catcatcatacatcataaaagccactttttaattatctttaaataaaagccactacttaataatgtttaaaattgttatcctgacagatatgcataaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833239 |
catcatcatacatcataaaagccactttttaattatctttaaataaaagccactacttaataatgtttaaaattgttatcctgacagatatgcataaatt |
32833338 |
T |
|
| Q |
111 |
taagaataaccgtcactaaaatttcaagcacaagttcatatcccataacataatccaatatatcaaatggaaacttacatcaagtgaacattacaaacat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32833339 |
taagaataaccgtcactaaaatttcaagcacaagttcatatcccataacataatccaatatatcaaatggaaacttacatcaagcgaacattacaaacat |
32833438 |
T |
|
| Q |
211 |
aaagtaaagtatatatattatgctgaattaatattttcccccactcatttataagtttatcagcataaagtaagatgcaattaagcattgaagataatta |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32833439 |
aaagtaaagtatatatattatgctgaattaatattttaccccactcatttataagtttatcagcataaagtaagatgcaattaagcatttaagataatta |
32833538 |
T |
|
| Q |
311 |
gattaacaagcttgattaagggtgagttagtatagtgtcaaccaaaag |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833539 |
gattaacaagcttgattaagggtgagttagtatagtgtcaaccaaaag |
32833586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 403 - 640
Target Start/End: Original strand, 29605235 - 29605472
Alignment:
| Q |
403 |
gttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaaagtcactcactatataataatgatcagtatcacaaatcaatc |
502 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29605235 |
gttacggttagagttacttgtgaagcaagtttccaattcaaacaagcatacactgaaacgtcactcactatataataatgatcagtatcacaaatcaatc |
29605334 |
T |
|
| Q |
503 |
ataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagatcctccatcctc |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||||| ||||||| |
|
|
| T |
29605335 |
ataataacatttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactgattaaccaaagaaacctcaagatcttccatccaa |
29605434 |
T |
|
| Q |
603 |
acccaaaaacaaacctccatttgattcgcaacaaccac |
640 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||||| |
|
|
| T |
29605435 |
tcccaaaaatcaacctccatctgattcacaacaaccac |
29605472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 229 - 358
Target Start/End: Original strand, 32839879 - 32840008
Alignment:
| Q |
229 |
tatgctgaattaatattttcccccactcatttataagtttatcagcataaagtaagatgcaattaagcattgaagataattagattaacaagcttgatta |
328 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
32839879 |
tatgctgaattaatatttttccccactcatttataagtttaccagcataaagtaagatgcaattaaacattgaagagaattagattaacaagcttgatta |
32839978 |
T |
|
| Q |
329 |
agggtgagttagtatagtgtcaaccaaaag |
358 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |
|
|
| T |
32839979 |
agtgtgagttagtatagtgtcaaccaaaag |
32840008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 895 - 1019
Target Start/End: Complemental strand, 31682760 - 31682639
Alignment:
| Q |
895 |
ggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgctcctttagccagaactcatc |
994 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
31682760 |
ggatcaaagctcattgtcataccttcaaggaaacctagt---ctccaagacacaccaatttatcatcctcaatcggatgctcctttagccggaactcatc |
31682664 |
T |
|
| Q |
995 |
gacttccagggtttctctcatcagg |
1019 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
31682663 |
aacttccatcgtttctctcatcagg |
31682639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 32839780 - 32839845
Alignment:
| Q |
157 |
aacataatccaatatatcaaatggaaacttacatcaagtgaacattacaaacataaagtaaagtat |
222 |
Q |
| |
|
|||||||||||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
32839780 |
aacataatccaataaatgaaatggaaacttaaatcaagtgaacattacaaacataatgtaaagtat |
32839845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 29605042 - 29605080
Alignment:
| Q |
257 |
atttataagtttatcagcataaagtaagatgcaattaag |
295 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
29605042 |
atttatatgtttatcagcacaaagtaagatgcaattaag |
29605080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 410 - 591
Target Start/End: Complemental strand, 19947009 - 19946835
Alignment:
| Q |
410 |
ttagagttacttgtgaagcaagcttccaattcaaacaagcatacactgaaaagtcactcactatataataatgatcagtatcacaaatcaatcataataa |
509 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| |||||||||||||| |||| |||| | |||||||||| || |||||||||| ||||| ||||| |
|
|
| T |
19947009 |
ttagagttacttgtgaagcaagcttctagttccaacaagcatacact--aaag-cact-agtatataataacaatgtgtatcacaaaataatcacaataa |
19946914 |
T |
|
| Q |
510 |
catttcacattttccatattctcttttctcagaaagaaagaaacctctcaacatgactcaatcaccaaagaactctcaagat |
591 |
Q |
| |
|
||||||||||||| |||| |||| || | ||||||||| ||| |||||||||||||| | ||| |||||||| | |||||| |
|
|
| T |
19946913 |
catttcacatttttcata--ctctcttgtgagaaagaaa-aaaactctcaacatgactgattcagcaaagaacacccaagat |
19946835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 395 - 456
Target Start/End: Complemental strand, 19947296 - 19947235
Alignment:
| Q |
395 |
agaagtcagttacagttagagttacttgtgaagcaagcttccaattcaaacaagcatacact |
456 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||| | ||| || ||||||||||| |
|
|
| T |
19947296 |
agaagtctgttacagttagagttacttgtgaagcaagtttctagttccaaaaagcatacact |
19947235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 19961187 - 19961148
Alignment:
| Q |
256 |
catttataagtttatcagcataaagtaagatgcaattaag |
295 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
19961187 |
catttataagtttatcagcacaaagtaagatgcagttaag |
19961148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 591
Target Start/End: Complemental strand, 28405835 - 28405748
Alignment:
| Q |
505 |
aataacatttcacattttccatattctcttttctcagaaagaa-agaaacctctcaacatgactcaatcaccaaagaactctcaagat |
591 |
Q |
| |
|
||||||| |||||||||| ||| || |||| | |||||||| |||||||||| |||||| ||||||||||||||||| ||||||| |
|
|
| T |
28405835 |
aataacacttcacattttgtatactcaattttgtgagaaagaagagaaacctcttaacatggctcaatcaccaaagaacgatcaagat |
28405748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 402 - 437
Target Start/End: Complemental strand, 28405906 - 28405871
Alignment:
| Q |
402 |
agttacagttagagttacttgtgaagcaagcttcca |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28405906 |
agttacagttagagttacttgtgaagcaagtttcca |
28405871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University