View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6022_high_10 (Length: 344)
Name: NF6022_high_10
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 40178107 - 40177789
Alignment:
| Q |
17 |
tttactagagttgattagtggctgtgaagcatataacagaaacatgtcaaatccatatgaaagtcttgtatttgaggtacatctaacatggtcaagtaac |
116 |
Q |
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| T |
40178107 |
tttactagagttgattagtggctgtgaagcatataacagaaatatgtcaaatccatatgaaagtcttgtatttgaggtacatctaacatggtcaagtaac |
40178008 |
T |
|
| Q |
117 |
cgtgtgtgaactgcgttaaccatttgaaaagttgtagaattttgttgtttcaaattgacgatcaaatgacatttcgacgagtttaaataagttggtcttt |
216 |
Q |
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| T |
40178007 |
cgtgtgtgaactgcgttaaccatttgaaaaattgtagaattttgtcgtttcaaattgacaatcaaatgacatttcgacgagtttaaataagttggtcttt |
40177908 |
T |
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| Q |
217 |
tggagcatactcactaatatatcataatttgttttgaaggcaaaatatagcagtgatttggaaaaatttattgacaaagcattaggagagcaagaaaaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40177907 |
tggagcatactcactaatatatcataatttgttttgaaggcaaaatatagcagtgatttggaaaaatttattgacaaagcattaggagagcaagaaaaac |
40177808 |
T |
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| Q |
317 |
atggtgctagaagaataat |
335 |
Q |
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| T |
40177807 |
atggtgctagaagaataat |
40177789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 7671868 - 7671916
Alignment:
| Q |
126 |
actgcgttaaccatttgaaaagttgtagaattttgttgtttcaaattga |
174 |
Q |
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| T |
7671868 |
actgcgttaaccatttgataagttgtcaaattttgttgtctcaaattga |
7671916 |
T |
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