View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6022_high_13 (Length: 290)
Name: NF6022_high_13
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 28762578 - 28762308
Alignment:
| Q |
1 |
tgagaaactggaccaattgagtcggacacaactcaaacagtcaaagcatcactagcctcaaccgatgtctgccaaagcataattatatgctttgcttaag |
100 |
Q |
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| T |
28762578 |
tgagaaactggaccaattgagtcggacacaactcaaacagtcaaagcatcactagcctcaaccgatgtctgccaaagcataattatatgctttgcttaag |
28762479 |
T |
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| Q |
101 |
ggacacatagctaagtcatgatatgccagtaaataatgaagctcaacaatttcaatggacagagagatgacaaaaaacaactaaagctgcgagtaagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28762478 |
ggacacatagctaagtcatgatatgccagtaaataatgaagctcaacaatttcaatggacagagagatgacaaaaaacaactaaagctgcgagtaagaag |
28762379 |
T |
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| Q |
201 |
gttagtttcatttaatcaaactacttcttcctgtaaatgcatacaaaatgaacatagccacacacaaattt |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28762378 |
gttagtttcatttaatcaaactacttcttcctgtaaatgcatacaaaatgaacatagccacacacaaattt |
28762308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42798961 - 42798911
Alignment:
| Q |
1 |
tgagaaactggaccaattgagtcggacacaactcaaacagtcaaagcatca |
51 |
Q |
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|||| ||||||||||| |||||| ||||||||||||||| ||||||||||| |
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| T |
42798961 |
tgagcaactggaccaactgagtcagacacaactcaaacaatcaaagcatca |
42798911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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