View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6022_high_17 (Length: 260)
Name: NF6022_high_17
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 43910128 - 43909898
Alignment:
| Q |
17 |
aatctcttggtatttatgttacacaggttaaaagatttaagccacaactcgttgctgttagaaacgagtctctacttgctgaacttcaagaagcgttaaa |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43910128 |
aatctcttggtatttatgttacataggttaaaagatttaagccacaactcgttgctgttagaaacgagtctctacttgctgaacttcaagaagcgttaaa |
43910029 |
T |
|
| Q |
117 |
agatgttgaagaaaaacctgagatcatcccgggagaacaaggcgtcattgaggtggaaatctgttttgtttatttattgcaatttggtttagaataccaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43910028 |
agatgttgaagaaaaacctgagatcatcccgggagaacaaggcgtcattgaggtggaaatctgttttgtttatttattgcaatttggtttagaataccaa |
43909929 |
T |
|
| Q |
217 |
tatcgtttttcataagctattgcttgtatat |
247 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
43909928 |
tatcgtttttcataagctattgcttttatat |
43909898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University