View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6022_high_21 (Length: 239)
Name: NF6022_high_21
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11155619 - 11155844
Alignment:
| Q |
1 |
tcatcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagcta |
100 |
Q |
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| T |
11155619 |
tcatcatcgatttggaagctgattttaatctgaggaacacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagtta |
11155718 |
T |
|
| Q |
101 |
tttgcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattcct |
200 |
Q |
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| T |
11155719 |
ttttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcct |
11155818 |
T |
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| Q |
201 |
tgggattattatgtccataatccccc |
226 |
Q |
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||||||||| ||| ||||||||||| |
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| T |
11155819 |
agggattattgtgttcataatccccc |
11155844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 11196069 - 11196291
Alignment:
| Q |
4 |
tcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagctattt |
103 |
Q |
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| T |
11196069 |
tcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattt |
11196168 |
T |
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| Q |
104 |
gcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgg |
203 |
Q |
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| T |
11196169 |
tcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagg |
11196268 |
T |
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| Q |
204 |
gattattatgtccataatccccc |
226 |
Q |
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| T |
11196269 |
gattattatttccataatccccc |
11196291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 11160566 - 11160706
Alignment:
| Q |
86 |
tgttttccctagctatttgcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg |
185 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||| | ||||||||||||||||| |||||| | || ||| |
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| T |
11160566 |
tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcagg |
11160665 |
T |
|
| Q |
186 |
aatgtgggtattccttgggattattatgtccataatccccc |
226 |
Q |
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| T |
11160666 |
aattttggtattcctagggattattgtgttcataatccccc |
11160706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 11199147 - 11199287
Alignment:
| Q |
86 |
tgttttccctagctatttgcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg |
185 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||| |||||| || ||||||| | ||||||||||||||||| |||||| | || ||| |
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| T |
11199147 |
tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattttggcagg |
11199246 |
T |
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| Q |
186 |
aatgtgggtattccttgggattattatgtccataatccccc |
226 |
Q |
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| T |
11199247 |
aattttggtattcctagggattattgtgttcataatccccc |
11199287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 39 - 188
Target Start/End: Original strand, 11132375 - 11132524
Alignment:
| Q |
39 |
acctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagctatttgcctctcaccttcataaacatgaattaaaatattg |
138 |
Q |
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| T |
11132375 |
acctgccggagctgggggaatttccaaaacaaattttcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatattg |
11132474 |
T |
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| Q |
139 |
atttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaat |
188 |
Q |
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| T |
11132475 |
gtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaat |
11132524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 11169976 - 11170025
Alignment:
| Q |
79 |
agcaagttgttttccctagctatttgcctctcaccttcataaacatgaat |
128 |
Q |
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| T |
11169976 |
agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat |
11170025 |
T |
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