View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6022_high_6 (Length: 402)

Name: NF6022_high_6
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6022_high_6
NF6022_high_6
[»] chr8 (3 HSPs)
chr8 (117-382)||(18033920-18034186)
chr8 (1-120)||(18033073-18033192)
chr8 (19-103)||(15932079-15932162)
[»] chr3 (1 HSPs)
chr3 (202-380)||(17504325-17504502)
[»] scaffold0333 (1 HSPs)
scaffold0333 (1-116)||(1331-1446)
[»] scaffold0205 (1 HSPs)
scaffold0205 (1-116)||(3819-3934)
[»] chr7 (2 HSPs)
chr7 (1-120)||(8325158-8325275)
chr7 (19-48)||(9609996-9610025)
[»] chr2 (1 HSPs)
chr2 (1-116)||(34135624-34135739)
[»] scaffold0005 (1 HSPs)
scaffold0005 (15-120)||(199379-199485)
[»] chr4 (4 HSPs)
chr4 (15-120)||(14617892-14617998)
chr4 (1-106)||(18420235-18420339)
chr4 (27-116)||(10115705-10115795)
chr4 (69-116)||(17213184-17213231)
[»] scaffold0282 (1 HSPs)
scaffold0282 (15-117)||(20308-20409)
[»] scaffold0111 (1 HSPs)
scaffold0111 (7-120)||(23099-23213)
[»] chr6 (2 HSPs)
chr6 (58-116)||(22544665-22544721)
chr6 (19-48)||(18631023-18631052)
[»] scaffold0327 (1 HSPs)
scaffold0327 (19-48)||(3372-3401)
[»] chr5 (1 HSPs)
chr5 (19-48)||(21224116-21224145)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 117 - 382
Target Start/End: Original strand, 18033920 - 18034186
Alignment:
Q  117 acaataaactaatcaaagagatgatatttacacccc-accgattgttatttatttccataagaatcgggaatataaattattagagtaagagaatgtaat 215  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18033920 acaataaaccaatcaaagagatgatatttacacccccaccgattgttatttatttccataagaatcgggaatataaattattagagtaagagaatgtaat 18034019  T
Q  216 tgatattccaaaagaattactctagaaatttatttaagaaaattataaatttatagttttagtttgtgttcctttgttgtggtggtgtcgtgtcgtttgt 315  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  18034020 tgatattccaaaagaattactctagaaatttattgaagaaaattacaaatttatagttttagtttgtgttcctttgtcgtggtggtgtcgtgtcgtctgt 18034119  T
Q  316 ggccgactgtaatttcactcgtgcgtcgttgcatagtcaatgaccaattgtaattccatccacctgt 382  Q
    ||||||||||||||||||||||||||| | | ||||||||||||| |||||||||||| ||||||||    
T  18034120 ggccgactgtaatttcactcgtgcgtcatcgtatagtcaatgaccgattgtaattccacccacctgt 18034186  T

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Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 18033073 - 18033192
Alignment:
Q  1 aactatataaccacccaaacaatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatca 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18033073 aactatataaccacccaaacaatgtaaaagtacacctccaattacattctttctaaatcaacaccatatgcattatcaagtattacaatccacacaatca 18033172  T
Q  101 acaagttacaattcaaacaa 120  Q
    ||||||||||||||||||||    
T  18033173 acaagttacaattcaaacaa 18033192  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 15932079 - 15932162
Alignment:
Q  19 acaatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaag-ttttacaatccacacaatcaaca 103  Q
    ||||||||||||||||||| ||||||||||  ||| |  |||||| ||| ||||||||||||  ||||| ||||||||||||||||    
T  15932079 acaatgtaaaagtacacctccaattacatt-gttcaacttcaacaacatttgcattatcaagcatttac-atccacacaatcaaca 15932162  T

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Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 202 - 380
Target Start/End: Original strand, 17504325 - 17504502
Alignment:
Q  202 taagagaatgtaattgatattccaaaagaattactctagaaatttatttaagaaaattataaatttatagttttagtttgtgttcctttgttgtggtggt 301  Q
    |||||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||| || ||||||||||||| || | || ||||||||| ||    
T  17504325 taagagaatgtaattgttattccaaaagaattgctcaagaaatttattgaagaaaattataactt-atagttttagtttttgattctgtgttgtggttgt 17504423  T
Q  302 gtcgtgtcgtttgtggccgactgtaatttcactcgtgcgtcgttgcatagtcaatgaccaattgtaattccatccacct 380  Q
    |||||||| | |||||| |||||||||| |||||| ||||||| |  ||||||||||||||||||||||||| ||||||    
T  17504424 gtcgtgtcatctgtggctgactgtaattccactcgagcgtcgtcgtgtagtcaatgaccaattgtaattccacccacct 17504502  T

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Target: scaffold0333 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1446 - 1331
Alignment:
Q  1 aactatataaccacccaaacaatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatca 100  Q
    |||||||||| |||| || ||||||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||| |    
T  1446 aactatataatcaccaaagcaatgtaaaagtacacctctaattacattcttcataaatcaacaccatatgcattatcaagttttacaattcacacaatta 1347  T
Q  101 acaagttacaattcaa 116  Q
    |||||| | |||||||    
T  1346 acaagtcataattcaa 1331  T

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Target: scaffold0205 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 3934 - 3819
Alignment:
Q  1 aactatataaccacccaaacaatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatca 100  Q
    |||||||||| |||| || ||| |||||||||||||| |||||||||||||  ||| ||||||| |||||||||||||||||||||||||||||||||||    
T  3934 aactatataatcaccaaagcaacgtaaaagtacacctccaattacattcttcataagtcaacacaatatgcattatcaagttttacaatccacacaatca 3835  T
Q  101 acaagttacaattcaa 116  Q
    |||||| | |||||||    
T  3834 acaagtcataattcaa 3819  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 8325275 - 8325158
Alignment:
Q  1 aactatataaccacccaaacaatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatca 100  Q
    |||||||||| ||||  |||||||||||||||||||| ||||||||||  |||  ||||||||||| | || ||||||||||||||||||||||||||||    
T  8325275 aactatataatcacc--aacaatgtaaaagtacacctccaattacatttcttcataatcaacaccacaggcgttatcaagttttacaatccacacaatca 8325178  T
Q  101 acaagttacaattcaaacaa 120  Q
    |||||| | |||||||||||    
T  8325177 acaagtcaaaattcaaacaa 8325158  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 9609996 - 9610025
Alignment:
Q  19 acaatgtaaaagtacaccttcaattacatt 48  Q
    ||||||||||||||||||||||||||||||    
T  9609996 acaatgtaaaagtacaccttcaattacatt 9610025  T

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Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34135739 - 34135624
Alignment:
Q  1 aactatataaccacccaaacaatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatca 100  Q
    ||||||||||||||| || |||| ||||| ||||||| |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||| ||||     
T  34135739 aactatataaccaccaaagcaatataaaactacacctccaattacattcttcataaatcaacaccatatgcattatgaagttttacaatccacataatcg 34135640  T
Q  101 acaagttacaattcaa 116  Q
    ||| || | |||||||    
T  34135639 acatgtcataattcaa 34135624  T

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Target: scaffold0005 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 199485 - 199379
Alignment:
Q  15 ccaaacaatgtaaaagtacaccttcaattacattct-ttctaaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaatt 113  Q
    ||||||||||||||||||||||| |||||||||| | |||  |||||||||||||  ||||||||||||||||||||||||||||||| |||| | ||||    
T  199485 ccaaacaatgtaaaagtacacctccaattacattttattcgtaatcaacaccatagacattatcaagttttacaatccacacaatcaataagtcataatt 199386  T
Q  114 caaacaa 120  Q
    |||||||    
T  199385 caaacaa 199379  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 14617892 - 14617998
Alignment:
Q  15 ccaaacaatgtaaaagtacaccttcaattacattct-ttctaaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaatt 113  Q
    ||||||||||||||||||||||| |||||||||| | |||  |||||||||||||  ||||||||||||||||||||||||||||||| |||| | ||||    
T  14617892 ccaaacaatgtaaaagtacacctccaattacattttattcgtaatcaacaccatagacattatcaagttttacaatccacacaatcaataagtcataatt 14617991  T
Q  114 caaacaa 120  Q
    |||||||    
T  14617992 caaacaa 14617998  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 18420339 - 18420235
Alignment:
Q  1 aactatataaccacccaaacaatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatca 100  Q
    |||||||||  |||| || |||||||||||||||||| |||||||||||||  ||| |||||||| |||||||||||||||||||| |||||||||||||    
T  18420339 aactatatattcaccaaagcaatgtaaaagtacacctccaattacattcttcataattcaacaccttatgcattatcaagttttac-atccacacaatca 18420241  T
Q  101 acaagt 106  Q
    ||||||    
T  18420240 acaagt 18420235  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 10115795 - 10115705
Alignment:
Q  27 aaagtacaccttcaattacattctttctaaat-caacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaattcaa 116  Q
    ||||||||||| |||||||||||||  ||||| ||||| ||| ||||||||||||||||   ||||||||||||||||||| | |||||||    
T  10115795 aaagtacacctccaattacattcttcataaattcaacatcatttgcattatcaagtttttacatccacacaatcaacaagtcataattcaa 10115705  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 17213231 - 17213184
Alignment:
Q  69 tgcattatcaagt-tttacaatccacacaatcaacaagttacaattcaa 116  Q
    ||||||||||||| |||||| |||||||||||||||||| |||||||||    
T  17213231 tgcattatcaagtatttaca-tccacacaatcaacaagtcacaattcaa 17213184  T

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Target: scaffold0282 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 20409 - 20308
Alignment:
Q  15 ccaaacaatgtaaaagtacaccttcaattacattctttctaaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaattc 114  Q
    |||| |||| ||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| | |||||    
T  20409 ccaagcaatataaaagtacacctccaattacattcttcataaatcaacaccatatgcattatcaag-tttccaatctacacaatcaacaagtcataattc 20311  T
Q  115 aaa 117  Q
    |||    
T  20310 aaa 20308  T

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Target: scaffold0111 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 23099 - 23213
Alignment:
Q  7 ataaccacccaaacaatgtaaaagtacaccttcaattacattctttc-taaatcaacaccatatgcattatcaagttttacaatccacacaatcaacaag 105  Q
    ||||||||| ||  ||||||||||||||||| ||| ||||||  ||| ||||||||||||||| ||| ||||||||||||||||||||| ||  ||||||    
T  23099 ataaccaccaaataaatgtaaaagtacacctccaactacatttcttcataaatcaacaccataggcactatcaagttttacaatccacataactaacaag 23198  T
Q  106 ttacaattcaaacaa 120  Q
    | | |||||||||||    
T  23199 tcataattcaaacaa 23213  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 22544665 - 22544721
Alignment:
Q  58 tcaacaccatatgcattatcaagttttacaatccacacaatcaacaagttacaattcaa 116  Q
    |||||||||| |||||||| |||||||||| |||||||||||||||||| | |||||||    
T  22544665 tcaacaccat-tgcattatgaagttttaca-tccacacaatcaacaagtcataattcaa 22544721  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 18631052 - 18631023
Alignment:
Q  19 acaatgtaaaagtacaccttcaattacatt 48  Q
    ||||||||||||||||||||||||||||||    
T  18631052 acaatgtaaaagtacaccttcaattacatt 18631023  T

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Target: scaffold0327 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 3401 - 3372
Alignment:
Q  19 acaatgtaaaagtacaccttcaattacatt 48  Q
    ||||||||||||||||||||||||||||||    
T  3401 acaatgtaaaagtacaccttcaattacatt 3372  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 21224145 - 21224116
Alignment:
Q  19 acaatgtaaaagtacaccttcaattacatt 48  Q
    ||||||||||||||||||||||||||||||    
T  21224145 acaatgtaaaagtacaccttcaattacatt 21224116  T

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