View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6022_high_7 (Length: 390)
Name: NF6022_high_7
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 12246081 - 12245787
Alignment:
| Q |
18 |
aatcattgatcacacataaccctctccctagaaacagtatcattaccatcacaattttaatttccgcaattttaccaatagtctgattattcgtcattgt |
117 |
Q |
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| T |
12246081 |
aatcattgatcacacataaccctctccctagcaacagtatcattaccatcacaattttaatttccgcaattttaccaatagtctgattatccgtcattgt |
12245982 |
T |
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| Q |
118 |
ttgtgatatccatgcctccttttgcaaacaaaaaagatgagatgcttcatattccttcaaatttgatccttgtacaaccaacacaggtaaatatgggtcc |
217 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12245981 |
ttgtgatatccatgccaccttttacaaacaaaaaagatgagttgcttcatactcctttaaatttgatccttgtacaaccaacacaggtaaatatgggtcc |
12245882 |
T |
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| Q |
218 |
tcatc---------ctccaaaatccttcaaagaccagatgtcggtgtcaacattgctgccagtaaaattacatacaaacggatgccactcaatct |
303 |
Q |
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| T |
12245881 |
tcatcctccttatcctccaaaatccttcaaagaccagatgtcggtgtcaacgttgctgccagtaaaattacatacaaacgaatgccactcaatct |
12245787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 12245751 - 12245674
Alignment:
| Q |
306 |
ttgccaaaacatagtggaggttcatcgttccaaaagtctaataatttaatttacctccgatccctaaaatattcttcg |
383 |
Q |
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||||||||||| || | | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
12245751 |
ttgccaaaacacagagaacgttcatcgttccaaaagtcaaataatttaatttacctccgatccctaaaatattattcg |
12245674 |
T |
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