View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6022_low_10 (Length: 350)
Name: NF6022_low_10
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 114 - 334
Target Start/End: Original strand, 25956980 - 25957200
Alignment:
| Q |
114 |
ttctcttcgttctacgacaatcaatttgatcattttacaaaaataaaataaaagtgtataatgaatgatacttttattaaattaaatttatccaactata |
213 |
Q |
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| T |
25956980 |
ttctcttcgttctacgacgatcaatttgatcattttaaaaaaataaaataaaagtgtataatgaatgatacttttattagattaaatttatccaactata |
25957079 |
T |
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| Q |
214 |
tattcatgtatttgctattatagttttgtttcaagtgttaacgttgtgtgtgtgaaggtgattggaaccgaagcaagggcagtctacaatgctggacaag |
313 |
Q |
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| T |
25957080 |
tattcatgtatttgcaattatagttttgtttcaagtgttaacgttgtgtgtgtgaaggtgattggaaccgaagcaagggcagtgtacaatgctggacaag |
25957179 |
T |
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| Q |
314 |
cagaagggatgacgttttggg |
334 |
Q |
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|||| |||||||| ||||||| |
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| T |
25957180 |
cagaggggatgacattttggg |
25957200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 25956868 - 25956918
Alignment:
| Q |
2 |
attaagatatataattactaatttaatttgaaaaaattatacctgactatg |
52 |
Q |
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| T |
25956868 |
attaagatatataattactaatttaatttgaaaaaattatacttgactatg |
25956918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 25888043 - 25887975
Alignment:
| Q |
266 |
tgaaggtgattggaaccgaagcaagggcagtctacaatgctggacaagcagaagggatgacgttttggg |
334 |
Q |
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| T |
25888043 |
tgaaggtgattggaactgaggctagaggagtgtacaatgctggacaagctcaagggatgacgttttggg |
25887975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 334
Target Start/End: Complemental strand, 25928486 - 25928421
Alignment:
| Q |
269 |
aggtgattggaaccgaagcaagggcagtctacaatgctggacaagcagaagggatgacgttttggg |
334 |
Q |
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| T |
25928486 |
aggtgattggaactgaggctagaggagtgtacaatgctggacaagctcaagggatgacgttttggg |
25928421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 25910650 - 25910582
Alignment:
| Q |
266 |
tgaaggtgattggaaccgaagcaagggcagtctacaatgctggacaagcagaagggatgacgttttggg |
334 |
Q |
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| T |
25910650 |
tgaaggtgattggaactgaggctagaggagtatacaatgctggacaagcccaagggatgaatttttggg |
25910582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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