View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6022_low_12 (Length: 338)
Name: NF6022_low_12
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 4 - 323
Target Start/End: Complemental strand, 31851329 - 31851010
Alignment:
| Q |
4 |
atgtcgaagaatatcttcaactactttgattcacatttacttaattcacgatgaatgagataactatgtgctaaattctgatttatctcctccttataaa |
103 |
Q |
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| T |
31851329 |
atgtcgatgaatatcttcaactactttgattcacatttacttaattcacgatgaatgagataactatgtgctaaattctgatttatctcctccatataaa |
31851230 |
T |
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| Q |
104 |
tacagagatcagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaagtagtgatatgtcacctcctcgacgaaaacacaatac |
203 |
Q |
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| T |
31851229 |
tacagagatcagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaagtagtgatatgtcacctcctcgacgaaaacacaatac |
31851130 |
T |
|
| Q |
204 |
taatttggatcgtgatctctctccaccaaggaagaatccagaggagccattcattccagcatctgttaatgaaagaaaaagtggtttgatttctgttaag |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31851129 |
taatttggatcgtgatctctctccaccaaggaagaatccagaggagccattcattccagcatctgttaatgaaagaaaaagtggtttgatttctgttaag |
31851030 |
T |
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| Q |
304 |
gaactcagagacaagattga |
323 |
Q |
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|||||||||||||||||||| |
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| T |
31851029 |
gaactcagagacaagattga |
31851010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 77 - 197
Target Start/End: Original strand, 18397703 - 18397824
Alignment:
| Q |
77 |
aattctgatttatctcctccttataaatacagagatcagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaag-tagtgata |
175 |
Q |
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||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||| |||| |||||| ||||||| |||||||| |
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| T |
18397703 |
aattctgatttatctcctcctcgtaaacacagagatcagagtgttacagctgtagcttgtgaaccaaggtcatctagatcaaagtttgaagatagtgata |
18397802 |
T |
|
| Q |
176 |
tgtcacctcctcgacgaaaaca |
197 |
Q |
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| T |
18397803 |
tgtcacctcctcgacggaaaca |
18397824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 11471089 - 11470968
Alignment:
| Q |
77 |
aattctgatttatctcctccttataaatacagagatcagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaag-tagtgata |
175 |
Q |
| |
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||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||| |||||||||||| |||| |||||| ||||||| |||||||| |
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| T |
11471089 |
aattctgatttatctcctcctcgtaaacacagagatcagagtgttacagatgtagctcgtgaaccaaggtcatctagatcaaagtttgaagatagtgata |
11470990 |
T |
|
| Q |
176 |
tgtcacctcctcgacgaaaaca |
197 |
Q |
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| T |
11470989 |
tgtcacctcctcgacggaaaca |
11470968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 305
Target Start/End: Complemental strand, 11470692 - 11470602
Alignment:
| Q |
215 |
gtgatctctctccaccaaggaagaatccagaggagccattcattccagcatctgttaatgaaagaaaaagtggtttgatttctgttaagga |
305 |
Q |
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|||| |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| ||||||| |||||| |
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| T |
11470692 |
gtgacctctctccaccaaggaagaatccaaaggagttatccattccagcatctgttaatgaaagaaaaacaggtttaatttctggtaagga |
11470602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 18398100 - 18398190
Alignment:
| Q |
215 |
gtgatctctctccaccaaggaagaatccagaggagccattcattccagcatctgttaatgaaagaaaaagtggtttgatttctgttaagga |
305 |
Q |
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|||| |||||||||||||||||||||||| ||||| || |||||| |||||| | |||||||| |||| ||||| ||||||| |||||| |
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| T |
18398100 |
gtgacctctctccaccaaggaagaatccaaaggagttatccattcctgcatctataaatgaaaggaaaataggtttaatttctggtaagga |
18398190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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