View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6022_low_17 (Length: 271)

Name: NF6022_low_17
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6022_low_17
NF6022_low_17
[»] chr2 (6 HSPs)
chr2 (17-271)||(10524628-10524879)
chr2 (17-271)||(10530935-10531186)
chr2 (17-135)||(10532999-10533118)
chr2 (17-135)||(10526176-10526298)
chr2 (139-212)||(10526043-10526117)
chr2 (142-212)||(10532866-10532937)
[»] chr3 (13 HSPs)
chr3 (26-135)||(34467446-34467555)
chr3 (19-128)||(34477404-34477513)
chr3 (26-122)||(27625629-27625725)
chr3 (26-122)||(34511402-34511498)
chr3 (69-128)||(34486593-34486652)
chr3 (53-128)||(34462552-34462627)
chr3 (17-109)||(34373000-34373096)
chr3 (147-212)||(34373188-34373254)
chr3 (71-135)||(34516891-34516955)
chr3 (71-135)||(34526059-34526123)
chr3 (142-191)||(27616127-27616176)
chr3 (142-191)||(34525793-34525842)
chr3 (147-191)||(34516569-34516613)
[»] scaffold1215 (2 HSPs)
scaffold1215 (17-135)||(168-290)
scaffold1215 (139-212)||(35-109)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 10524879 - 10524628
Alignment:
Q  17 tcatgatgagacattacatatatgaaacaagacggttatattcctactctttggatttttatttctctaatattctttccgttttaaggttaccttggaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10524879 tcatgatgagacattacatatatgaaacaagacggttatattcctactctttggatttttatttctctaatattctttccgttttaaggttaccttggaa 10524780  T
Q  117 gatacaggaggtctgtgtaatcatctatctttattgtctttctggatatgaaaattttcattccaaaccttgaatgaattttattgctagaattacgtgc 216  Q
    |||||||||||||||||||   ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10524779 gatacaggaggtctgtgta---atctatcattattgtctttctggatatgaaaactttcattccaaaccttgaatgaattttattgctagaattacgtgc 10524683  T
Q  217 gtagaattattaaatcttgtttgttacagtaatcacagatgcagttgttgtatca 271  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10524682 gtagaattgttaaatcttgtttgttacagtaatcacagatgcagttgttgtatca 10524628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 10531186 - 10530935
Alignment:
Q  17 tcatgatgagacattacatatatgaaacaagacggttatattcctactctttggatttttatttctctaatattctttccgttttaaggttaccttggaa 116  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  10531186 tcatgatgagacattacatataagaaacaagacgggtatattcctactctttggatttttatttctctaatattctttccattttaaggttactttggaa 10531087  T
Q  117 gatacaggaggtctgtgtaatcatctatctttattgtctttctggatatgaaaattttcattccaaaccttgaatgaattttattgctagaattacgtgc 216  Q
    ||||| |||||| |||| |   ||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| | |    
T  10531086 gatacgggaggtatgtgca---atctatcattattgtctttctggatatgaaaactttcattccaaatcttgaattaattttattgctagaattactttc 10530990  T
Q  217 gtagaattattaaatcttgtttgttacagtaatcacagatgcagttgttgtatca 271  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||||| |||||    
T  10530989 gtagaatcgttaaatcttgtttgttacattaatcacagatgcagttgttctatca 10530935  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 10533118 - 10532999
Alignment:
Q  17 tcatgatgagacattacatatatgaaacaagacggttatattcctactctttggatttttatttctctaata-ttctttccgttttaaggttaccttgga 115  Q
    |||||||||||||||||||||| ||||||||||  |||||||||  || || |||||||||||||||||||| || |||||||||||||||| | ||  |    
T  10533118 tcatgatgagacattacatataagaaacaagacaattatattcccgcttttcggatttttatttctctaatatttttttccgttttaaggttgctttaaa 10533019  T
Q  116 agatacaggaggtctgtgta 135  Q
    |||||| |||||| ||||||    
T  10533018 agatacgggaggtgtgtgta 10532999  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 10526298 - 10526176
Alignment:
Q  17 tcatgatgagacattacatatatgaaacaagacggttatattcctactctttggatttttatttctctaata----ttctttccgttttaaggttacctt 112  Q
    |||||||||||||||||||||| ||||||||||  |||||||||   | || ||||||||||||||| ||||    || |||||||||||||||| | ||    
T  10526298 tcatgatgagacattacatataagaaacaagacaattatattcccgtttttcggatttttatttctcaaatagtagttttttccgttttaaggttgcttt 10526199  T
Q  113 ggaagatacaggaggtctgtgta 135  Q
      ||||||| |||||| ||||||    
T  10526198 aaaagatacgggaggtgtgtgta 10526176  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 10526117 - 10526043
Alignment:
Q  139 atctatctttattgtctttctggatatgaaaattttcattccaaaccttgaatgaattt-tattgctagaattac 212  Q
    ||||||| |||||||||||||| ||||||||| | |||||||||| | ||||| ||||| | |||||||||||||    
T  10526117 atctatcattattgtctttctgaatatgaaaactctcattccaaaacatgaataaatttctgttgctagaattac 10526043  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 10532937 - 10532866
Alignment:
Q  142 tatctttattgtctttctggatatgaaaattttcattccaaaccttgaatgaattt-tattgctagaattac 212  Q
    |||| |||||||||||||| ||||||||| | |||||||||| | ||||| ||||| | |||||||||||||    
T  10532937 tatcattattgtctttctgaatatgaaaactctcattccaaaacatgaataaatttctgttgctagaattac 10532866  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 34467555 - 34467446
Alignment:
Q  26 gacattacatatatgaaacaagacggttatattcctactctttggatttttatttctctaatattctttccgttttaaggttaccttggaagatacagga 125  Q
    ||||||||||||| |||||| |||| |||| ||||  ||||| || ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  34467555 gacattacatataagaaacacgacgtttatgttcccgctcttcggttttttatttctctaatattctttccattttaaggttactttgaaagatacagga 34467456  T
Q  126 ggtctgtgta 135  Q
    ||| ||||||    
T  34467455 ggtttgtgta 34467446  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 34477513 - 34477404
Alignment:
Q  19 atgatgagacattacatatatgaaacaagacggttatattcctactctttggatttttatttctctaatattctttccgttttaaggttaccttggaaga 118  Q
    |||||||||| |||||||||  |||||||||  |||||||||  |||||   |||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  34477513 atgatgagacgttacatataataaacaagaccattatattcccgctcttcacatttttatttctctaatattatttccgttttaaggctactttggaaga 34477414  T
Q  119 tacaggaggt 128  Q
    ||||||||||    
T  34477413 tacaggaggt 34477404  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 27625725 - 27625629
Alignment:
Q  26 gacattacatatatgaaacaagacggttatattcctactctttggatttttatttctctaatattctttccgttttaaggttaccttggaagataca 122  Q
    ||||| ||||||| ||||||||||  |||| ||||  ||||| || |||||||||||||||||||||||| ||||||||||| | ||| ||||||||    
T  27625725 gacatcacatataagaaacaagacatttatgttcccgctcttcggttttttatttctctaatattctttctgttttaaggttgctttgaaagataca 27625629  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 34511498 - 34511402
Alignment:
Q  26 gacattacatatatgaaacaagacggttatattcctactctttggatttttatttctctaatattctttccgttttaaggttaccttggaagataca 122  Q
    ||||| ||||||| ||||||||||  |||| ||||  ||||| || |||||||||||||||||||||||| ||||||||||| | ||| ||||||||    
T  34511498 gacatcacatataagaaacaagacatttatgttcccgctcttcggttttttatttctctaatattctttctgttttaaggttgctttgaaagataca 34511402  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 34486652 - 34486593
Alignment:
Q  69 ggatttttatttctctaatattctttccgttttaaggttaccttggaagatacaggaggt 128  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  34486652 ggattttcatttttctaatattctttccgttttaaggttacattgaaagatacaggaggt 34486593  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 34462627 - 34462552
Alignment:
Q  53 tatattcctactctttggatttttatttctctaatattctttccgttttaaggttaccttggaagatacaggaggt 128  Q
    ||||||||  ||||| | ||||||||||||||||||||||||| ||| |||||||   || |||||||||||||||    
T  34462627 tatattcccgctcttcgcatttttatttctctaatattctttctgttgtaaggtttttttcgaagatacaggaggt 34462552  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 34373000 - 34373096
Alignment:
Q  17 tcatgatgagacattacatatatgaaacaagacggttat---attcctactctttggatttttatttctctaata-ttctttccgttttaaggttac 109  Q
    ||||||||||| |||| ||||| |||||||||| |||||   ||| |  || ||||||||||||| ||||||||| || ||||||||||||||||||    
T  34373000 tcatgatgagagattaaatataagaaacaagacagttattatattgccgctttttggatttttatatctctaatatttttttccgttttaaggttac 34373096  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 34373188 - 34373254
Alignment:
Q  147 ttattgtctttctggatatgaaaattttcattccaaaccttgaatgaa-ttttattgctagaattac 212  Q
    |||||||||||||| ||||||||| | |||||||||||| ||||| || ||||||||||| ||||||    
T  34373188 ttattgtctttctgaatatgaaaactctcattccaaaccatgaataaatttttattgctaaaattac 34373254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 34516955 - 34516891
Alignment:
Q  71 atttttatttctctaatattctttccgttttaaggttaccttggaagatacaggaggtctgtgta 135  Q
    ||||| |||| ||||||||||||||| |||||||||||| ||| |||||||  ||||| ||||||    
T  34516955 attttcatttatctaatattctttccattttaaggttacattgaaagatacgagaggtgtgtgta 34516891  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 34526123 - 34526059
Alignment:
Q  71 atttttatttctctaatattctttccgttttaaggttaccttggaagatacaggaggtctgtgta 135  Q
    ||||| |||| ||||||||||||||| |||||||||||| ||| |||||||  ||||| ||||||    
T  34526123 attttcatttatctaatattctttccattttaaggttacattgaaagatacgagaggtatgtgta 34526059  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 27616176 - 27616127
Alignment:
Q  142 tatctttattgtctttctggatatgaaaattttcattccaaaccttgaat 191  Q
    |||| ||||| |||||||| |||| |||| ||||||||||||||||||||    
T  27616176 tatcattattttctttctgaatataaaaactttcattccaaaccttgaat 27616127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 34525842 - 34525793
Alignment:
Q  142 tatctttattgtctttctggatatgaaaattttcattccaaaccttgaat 191  Q
    |||| ||||| |||||||| ||||||||| ||||| ||||||||||||||    
T  34525842 tatcattattttctttctgaatatgaaaactttcactccaaaccttgaat 34525793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 34516613 - 34516569
Alignment:
Q  147 ttattgtctttctggatatgaaaattttcattccaaaccttgaat 191  Q
    ||||| ||||| || ||||||||| ||||||||||||||||||||    
T  34516613 ttattttctttttgaatatgaaaactttcattccaaaccttgaat 34516569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold1215
Description:

Target: scaffold1215; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 290 - 168
Alignment:
Q  17 tcatgatgagacattacatatatgaaacaagacggttatattcctactctttggatttttatttctctaata----ttctttccgttttaaggttacctt 112  Q
    |||||||||||||||||||||| ||||||||||  |||||||||   | || ||||||||||||||| ||||    || |||||||||||||||| | ||    
T  290 tcatgatgagacattacatataagaaacaagacaattatattcccgtttttcggatttttatttctcaaatagtagttttttccgttttaaggttgcttt 191  T
Q  113 ggaagatacaggaggtctgtgta 135  Q
      ||||||| |||||| ||||||    
T  190 aaaagatacgggaggtgtgtgta 168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1215; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 109 - 35
Alignment:
Q  139 atctatctttattgtctttctggatatgaaaattttcattccaaaccttgaatgaattt-tattgctagaattac 212  Q
    ||||||| |||||||||||||| ||||||||| | |||||||||| | ||||| ||||| | |||||||||||||    
T  109 atctatcattattgtctttctgaatatgaaaactctcattccaaaacatgaataaatttctgttgctagaattac 35  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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