View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6022_low_19 (Length: 249)
Name: NF6022_low_19
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 3938844 - 3938686
Alignment:
| Q |
42 |
ggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaagctaagaagtttggagagccttggtcgtcaaaatc |
141 |
Q |
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| T |
3938844 |
ggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaagctaagaagtttggagagccttggtcgtcaaaatc |
3938745 |
T |
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| Q |
142 |
aagattgagaagtgagagccatagttggttccatttcttggagaggatgcttgttgcag |
200 |
Q |
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| T |
3938744 |
aagagtgagaactgagagccatagttggttccatttcttggagaggatgcttgttgcag |
3938686 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 12651782 - 12651704
Alignment:
| Q |
29 |
ccacatttgagacggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaag |
107 |
Q |
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| T |
12651782 |
ccacatttgagtcggaacgattggattggcgaggttgggtcacgcgtgagcatgactgagtagacaaaaagtcgaaaag |
12651704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 47606574 - 47606642
Alignment:
| Q |
127 |
ttggtcgtcaaaatcaagattgagaagtgagagccatagttggttccatttcttggagaggatgcttgt |
195 |
Q |
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| T |
47606574 |
ttggtcgtcgaagtgaaaattaagaactgagagccatagtgggttccatctctttgagaggatgcttgt |
47606642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 12505027 - 12504948
Alignment:
| Q |
29 |
ccacatttgagacggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaagc |
108 |
Q |
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| T |
12505027 |
ccacatttgaggtggaacaatcggatgggcaatgtggggtcacggatgagcatgactgagtagacgaaaagtcgaaaagc |
12504948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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