View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6022_low_2 (Length: 641)

Name: NF6022_low_2
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6022_low_2
NF6022_low_2
[»] chr8 (21 HSPs)
chr8 (15-641)||(18032435-18033061)
chr8 (160-480)||(25261578-25261898)
chr8 (187-362)||(14400056-14400232)
chr8 (331-500)||(23543800-23543970)
chr8 (421-503)||(24623295-24623377)
chr8 (160-251)||(16227917-16228009)
chr8 (164-278)||(21675704-21675818)
chr8 (167-240)||(23539187-23539261)
chr8 (523-610)||(24266618-24266702)
chr8 (523-610)||(29296515-29296599)
chr8 (523-610)||(26010062-26010146)
chr8 (435-480)||(31195903-31195948)
chr8 (554-610)||(19333117-19333173)
chr8 (523-610)||(24554072-24554155)
chr8 (160-240)||(23638080-23638161)
chr8 (435-479)||(16041164-16041208)
chr8 (435-479)||(16042840-16042884)
chr8 (435-479)||(17500517-17500561)
chr8 (435-479)||(18610759-18610803)
chr8 (443-479)||(24906448-24906484)
chr8 (435-479)||(25608641-25608685)
[»] scaffold0058 (1 HSPs)
scaffold0058 (160-607)||(79050-79497)
[»] chr7 (34 HSPs)
chr7 (304-640)||(8325288-8325621)
chr7 (163-503)||(15755904-15756245)
chr7 (160-484)||(16195379-16195695)
chr7 (376-503)||(16436381-16436508)
chr7 (409-550)||(26427092-26427235)
chr7 (424-603)||(6461282-6461468)
chr7 (304-503)||(3172160-3172358)
chr7 (435-503)||(9128900-9128968)
chr7 (162-261)||(11775717-11775817)
chr7 (466-568)||(16206939-16207040)
chr7 (523-610)||(14939398-14939482)
chr7 (523-610)||(15366991-15367075)
chr7 (424-480)||(6210571-6210627)
chr7 (437-500)||(17151041-17151105)
chr7 (523-610)||(45148180-45148265)
chr7 (523-609)||(48353959-48354042)
chr7 (523-610)||(4437468-4437551)
chr7 (523-610)||(4444869-4444952)
chr7 (523-598)||(16207030-16207103)
chr7 (266-317)||(16436568-16436619)
chr7 (160-261)||(20146942-20147044)
chr7 (435-482)||(39293365-39293412)
chr7 (435-481)||(14974185-14974231)
chr7 (435-481)||(15403661-15403707)
chr7 (523-610)||(9609861-9609945)
chr7 (523-610)||(9837433-9837517)
chr7 (523-610)||(16921413-16921497)
chr7 (409-478)||(20911997-20912066)
chr7 (557-610)||(33558343-33558396)
chr7 (160-212)||(8325696-8325748)
chr7 (436-503)||(13487797-13487865)
chr7 (435-479)||(14252961-14253005)
chr7 (435-479)||(14278125-14278169)
chr7 (435-479)||(45148082-45148126)
[»] chr6 (22 HSPs)
chr6 (163-503)||(1560130-1560471)
chr6 (400-610)||(5485830-5486040)
chr6 (47-162)||(19841381-19841499)
chr6 (358-488)||(19728990-19729121)
chr6 (525-610)||(4173169-4173252)
chr6 (422-538)||(24217339-24217457)
chr6 (523-610)||(4228778-4228863)
chr6 (523-610)||(29162002-29162087)
chr6 (523-611)||(11374342-11374428)
chr6 (523-610)||(29604179-29604263)
chr6 (523-610)||(32350692-32350776)
chr6 (160-251)||(12484690-12484781)
chr6 (523-602)||(17375252-17375329)
chr6 (524-610)||(15006147-15006230)
chr6 (524-593)||(22363687-22363753)
chr6 (435-480)||(12466177-12466222)
chr6 (434-479)||(31162516-31162561)
chr6 (435-480)||(35010940-35010985)
chr6 (177-240)||(6777710-6777774)
chr6 (192-251)||(14796697-14796757)
chr6 (435-479)||(19627829-19627873)
chr6 (435-479)||(22595121-22595165)
[»] chr3 (29 HSPs)
chr3 (420-610)||(27050223-27050414)
chr3 (306-503)||(8853523-8853720)
chr3 (163-503)||(19633407-19633724)
chr3 (351-503)||(16220329-16220481)
chr3 (233-481)||(10724780-10725026)
chr3 (338-503)||(13438455-13438621)
chr3 (160-278)||(15956723-15956842)
chr3 (523-610)||(17759926-17760011)
chr3 (523-610)||(19061246-19061331)
chr3 (521-610)||(43429033-43429119)
chr3 (421-502)||(8022737-8022818)
chr3 (424-478)||(17385339-17385393)
chr3 (420-477)||(6808899-6808956)
chr3 (443-503)||(12254390-12254450)
chr3 (164-278)||(8853891-8854005)
chr3 (435-481)||(11401078-11401124)
chr3 (523-610)||(4147173-4147257)
chr3 (523-610)||(14817192-14817276)
chr3 (435-479)||(54040205-54040249)
chr3 (435-479)||(54049492-54049536)
chr3 (443-516)||(21094208-21094282)
chr3 (523-610)||(4163680-4163764)
chr3 (160-213)||(6808618-6808671)
chr3 (523-610)||(17320073-17320157)
chr3 (435-480)||(17391839-17391884)
chr3 (523-610)||(18968708-18968792)
chr3 (435-480)||(25105581-25105626)
chr3 (428-480)||(9637722-9637774)
chr3 (435-479)||(15551125-15551169)
[»] scaffold0282 (2 HSPs)
scaffold0282 (435-641)||(20434-20641)
scaffold0282 (162-240)||(21143-21221)
[»] scaffold0205 (2 HSPs)
scaffold0205 (424-568)||(4049-4194)
scaffold0205 (523-641)||(3946-4059)
[»] chr5 (16 HSPs)
chr5 (409-553)||(37278042-37278188)
chr5 (16-278)||(22446876-22447147)
chr5 (404-503)||(25340898-25340998)
chr5 (243-487)||(19318114-19318356)
chr5 (409-532)||(37275771-37275896)
chr5 (164-240)||(10179000-10179074)
chr5 (523-610)||(29912670-29912754)
chr5 (375-501)||(19266820-19266944)
chr5 (549-610)||(21108171-21108232)
chr5 (523-610)||(24082727-24082811)
chr5 (160-251)||(17362458-17362550)
chr5 (443-477)||(33627893-33627927)
chr5 (266-355)||(25340788-25340877)
chr5 (435-480)||(34937950-34937995)
chr5 (435-479)||(14343506-14343550)
chr5 (554-602)||(26561292-26561340)
[»] chr4 (20 HSPs)
chr4 (221-448)||(12415100-12415319)
chr4 (435-594)||(19076290-19076452)
chr4 (331-503)||(18667778-18667951)
chr4 (160-430)||(5889573-5889843)
chr4 (331-503)||(18713450-18713623)
chr4 (515-603)||(14617746-14617834)
chr4 (428-608)||(10115866-10116053)
chr4 (392-641)||(18420351-18420605)
chr4 (420-503)||(14616495-14616578)
chr4 (424-498)||(20847388-20847463)
chr4 (167-278)||(9197377-9197488)
chr4 (524-610)||(12732764-12732847)
chr4 (162-202)||(19076130-19076170)
chr4 (254-317)||(11774668-11774731)
chr4 (173-251)||(17957339-17957418)
chr4 (523-603)||(18275435-18275512)
chr4 (418-471)||(11774826-11774879)
chr4 (435-479)||(19699231-19699275)
chr4 (435-479)||(19709816-19709860)
chr4 (435-479)||(40902363-40902407)
[»] scaffold0333 (2 HSPs)
scaffold0333 (516-609)||(1483-1576)
scaffold0333 (160-240)||(4339-4420)
[»] scaffold0024 (1 HSPs)
scaffold0024 (410-502)||(101084-101177)
[»] scaffold0005 (2 HSPs)
scaffold0005 (515-603)||(199543-199631)
scaffold0005 (420-503)||(200799-200882)
[»] chr2 (13 HSPs)
chr2 (507-594)||(34135778-34135865)
chr2 (375-507)||(18994703-18994835)
chr2 (160-317)||(24533431-24533587)
chr2 (420-480)||(22576522-22576582)
chr2 (523-603)||(20271983-20272061)
chr2 (523-610)||(6093442-6093527)
chr2 (418-477)||(24533277-24533336)
chr2 (523-610)||(25132799-25132883)
chr2 (435-479)||(7513680-7513724)
chr2 (435-479)||(22331165-22331209)
chr2 (160-251)||(34898456-34898548)
chr2 (435-479)||(42180027-42180071)
chr2 (435-479)||(45619698-45619742)
[»] scaffold0003 (2 HSPs)
scaffold0003 (376-503)||(26011-26138)
scaffold0003 (266-317)||(26198-26249)
[»] chr1 (10 HSPs)
chr1 (160-259)||(35564881-35564983)
chr1 (15-162)||(35564710-35564846)
chr1 (523-610)||(33395936-33396021)
chr1 (160-277)||(30821610-30821727)
chr1 (418-503)||(21199214-21199299)
chr1 (174-240)||(15807072-15807139)
chr1 (215-278)||(22613664-22613727)
chr1 (523-593)||(17022185-17022252)
chr1 (435-479)||(20252697-20252741)
chr1 (435-479)||(33395839-33395883)
[»] scaffold1869 (1 HSPs)
scaffold1869 (214-502)||(575-862)
[»] scaffold0006 (1 HSPs)
scaffold0006 (523-610)||(198848-198932)
[»] scaffold0223 (1 HSPs)
scaffold0223 (101-160)||(13709-13769)
[»] scaffold0417 (1 HSPs)
scaffold0417 (160-281)||(1911-2032)
[»] scaffold1885 (1 HSPs)
scaffold1885 (160-213)||(878-931)
[»] scaffold0357 (1 HSPs)
scaffold0357 (523-610)||(6351-6435)
[»] scaffold0317 (2 HSPs)
scaffold0317 (523-603)||(15394-15472)
scaffold0317 (435-480)||(15508-15553)
[»] scaffold0174 (1 HSPs)
scaffold0174 (523-603)||(21585-21663)
[»] scaffold0107 (1 HSPs)
scaffold0107 (523-610)||(12056-12140)
[»] scaffold0508 (1 HSPs)
scaffold0508 (422-502)||(5836-5916)
[»] scaffold0186 (1 HSPs)
scaffold0186 (424-480)||(11521-11577)
[»] scaffold0123 (1 HSPs)
scaffold0123 (435-503)||(33829-33900)
[»] scaffold0017 (1 HSPs)
scaffold0017 (523-610)||(11202-11287)
[»] scaffold0253 (2 HSPs)
scaffold0253 (523-610)||(9968-10052)
scaffold0253 (523-610)||(19393-19477)
[»] scaffold0047 (1 HSPs)
scaffold0047 (523-610)||(1565-1649)
[»] scaffold0013 (1 HSPs)
scaffold0013 (523-610)||(10853-10937)
[»] scaffold0010 (1 HSPs)
scaffold0010 (523-592)||(29724-29790)
[»] scaffold0387 (1 HSPs)
scaffold0387 (523-603)||(2441-2518)
[»] scaffold0009 (2 HSPs)
scaffold0009 (435-481)||(256037-256083)
scaffold0009 (523-593)||(68120-68187)
[»] scaffold0175 (1 HSPs)
scaffold0175 (523-610)||(6650-6734)
[»] scaffold0032 (1 HSPs)
scaffold0032 (523-610)||(106102-106186)
[»] scaffold0396 (1 HSPs)
scaffold0396 (435-479)||(164-208)
[»] scaffold0161 (1 HSPs)
scaffold0161 (424-500)||(3796-3875)
[»] scaffold0138 (3 HSPs)
scaffold0138 (435-479)||(26805-26849)
scaffold0138 (435-479)||(27820-27864)
scaffold0138 (435-479)||(39816-39860)
[»] scaffold0115 (1 HSPs)
scaffold0115 (435-479)||(20218-20262)


Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 15 - 641
Target Start/End: Original strand, 18032435 - 18033061
Alignment:
Q  15 tcaaaacataagtaatatctcaatagtcaaataatagtctcaacataaagcaacgacaaatgtaagagtcgatcctaatcagagtccgacactactaaac 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  18032435 tcaaaacataagtaatatctcaatagtcaaataataatctcaacataaagcaacgacaaatgtaagactcgatcctaatcagagcccgacactactaaac 18032534  T
Q  115 ttcaaagcagataaaggaggaagcttccgctacctcaagcaactcacccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttagaa 214  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18032535 ttcaaagcagataaaggaggaagcttctgctacctcaagcaactcacccattcataagaataaggcaggcggtcaaacaaacgaccaccaggggttagaa 18032634  T
Q  215 acattccataattaaagtataatcaattgaaagtaaacgacataatttaaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18032635 acattccataattaaagtataatcaattgaaagtaaacgacataatttaaattcacatgattatcaaattcagcatcatcttaaaccatcaagtatacaa 18032734  T
Q  315 gcattatcaagcactgcatataattcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagta 414  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  18032735 gcataatcaagcaatgcatataattcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacatatacaccgattcacatatccaagta 18032834  T
Q  415 tggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttacagtttgaaccc 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  18032835 tggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatctagatgcatgtggtaccattagattcaagagataattttaccgtttgaaccc 18032934  T
Q  515 acacccacgtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatgttgc 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||    
T  18032935 acacccacgtaagagtacacctcctcttacgtatttcacctatgtaaaagtacacttcattttacatttttcatatgactcaatatgaccatgatgctgc 18033034  T
Q  615 atggacttcaagtaagaatcgacaatg 641  Q
    ||||||||||||||||| |||||||||    
T  18033035 atggacttcaagtaagactcgacaatg 18033061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 160 - 480
Target Start/End: Original strand, 25261578 - 25261898
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaattgaaagtaaac-gacat 257  Q
    |||||| |||| |||||||| | | |||||| |||||||||||  ||  ||||| ||||||| | ||||||||||||||||| ||||||||||  |||||    
T  25261578 acccatccatatgaataaggtaagcggtcaaccaaacgaccacttggaattagataacattcaacaattaaagtataatcaaatgaaagtaaaatgacat 25261677  T
Q  258 aatttaaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagcattatcaagcactgcatataattcacctttttcaagtattg 357  Q
    | ||||| |||| |||||||| |||  |   |||| | ||||||||||||||||||||||  |||||| | |||||| |||||||||||||| ||||||     
T  25261678 a-tttaatttcaaatgattaataaaacccatatcaacataaaccatcaagtatacaagcacaatcaagaaatgcatacaattcacctttttcgagtattc 25261776  T
Q  358 acaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagac 457  Q
    ||||| |||||| ||  | |  | || ||| |||||||| ||||| ||||| ||||||| | |||||||||||||||||| ||| || ||||||||||||    
T  25261777 acaacaatcacc-aagttccgtcgatgcacgtatacaccaattcacatatcaaagtatgacacgactcaccaattaacaagtgcatgtaatgttctagac 25261875  T
Q  458 tcatttagatgcatgtggtacca 480  Q
    || | ||||||||||||||||||    
T  25261876 tcttctagatgcatgtggtacca 25261898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 187 - 362
Target Start/End: Complemental strand, 14400232 - 14400056
Alignment:
Q  187 tcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaattgaaagtaaa-cgacataatttaaattcacatgattaacaaat- 283  Q
    |||| ||||||||||| ||| |||||| ||||||| | ||||||||||||||||| | |||||||| |||||||||| ||||||| |||||||| |||      
T  14400232 tcaaccaaacgaccactaggtgttagataacattcaacaattaaagtataatcaagtcaaagtaaaacgacataatt-aaattcaaatgattaataaaac 14400134  T
Q  284 tcagcatcatcttaaaccatcaagtatacaagcattatcaagcactgcatataattcacctttttcaagtattgacaac 362  Q
    ||  ||||||| |||| |||||||||||||||||| |||||| | |||||| |||||| |||||||||||||| |||||    
T  14400133 tcctcatcatcataaatcatcaagtatacaagcataatcaaggaatgcatacaattca-ctttttcaagtattcacaac 14400056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 331 - 500
Target Start/End: Complemental strand, 23543970 - 23543800
Alignment:
Q  331 catataattcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatgg-ctcgactcacca 429  Q
    |||| ||||||| || |||||||||  ||||| || ||||||  |||| |||| ||| |||||||||||||| |||| ||| || || ||||||||||||    
T  23543970 catacaattcactttgttcaagtatccacaacaattaccaaaagttcaacaatgcacatatacaccgattcacatattcaaataaggactcgactcacca 23543871  T
Q  430 attaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattt 500  Q
    ||||| || ||| ||||||||||||||||| | |||||||||||| ||||||  ||||  |||||||||||    
T  23543870 attaataagtgcatgcaatgttctagactcttctagatgcatgtgataccataggatttcggagataattt 23543800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 421 - 503
Target Start/End: Original strand, 24623295 - 24623377
Alignment:
Q  421 gactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    |||||||||| ||| |||||| |||||||||||| |||| | |||||||||||||||||||| ||||| ||||||||||||||    
T  24623295 gactcaccaaataataaatgcatgcaatgttctaaactcttctagatgcatgtggtaccattggattccggagataattttac 24623377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 16227917 - 16228009
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaattgaaagtaaa 251  Q
    |||||| |||| |||||||| ||| |||||| |||||||||||  | ||||||| ||||||||||||||||| ||||||||| ||||||||||    
T  16227917 acccatccatatgaataaggtaggcggtcaaccaaacgaccactggtggttagataacattccataattaaactataatcaaatgaaagtaaa 16228009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 21675704 - 21675818
Alignment:
Q  164 attcataagaataaggcaggtggtcaaacaaacgaccaccaggggttagaaa-cattccataattaaagtataatcaattgaaagtaaacgacataattt 262  Q
    ||||| |||||||||||||| |||||| ||||||||||   ||||||||    |||| || ||||||||||||||||| |||||||||||| | ||| ||    
T  21675704 attcaaaagaataaggcaggcggtcaaccaaacgaccattgggggttagttcgcatttcacaattaaagtataatcaaatgaaagtaaacggcttaa-tt 21675802  T
Q  263 aaattcacatgattaa 278  Q
    ||||||| ||||||||    
T  21675803 aaattcaaatgattaa 21675818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 23539187 - 23539261
Alignment:
Q  167 cataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaa 240  Q
    |||| |||||||| |||||||||| |||| | |||| |||||||||| ||||||||| |||||||||||||||||    
T  23539187 catacgaataaggtaggtggtcaaccaaaaggccactaggggttagataacattccacaattaaagtataatcaa 23539261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 24266618 - 24266702
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  24266618 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatg 24266702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 29296515 - 29296599
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  29296515 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatg 29296599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 26010062 - 26010146
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||| | |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  26010062 gtaagagtacacctcctcttatgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatg 26010146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 31195948 - 31195903
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacca 480  Q
    ||||||| ||||||||||||||||| | ||||||||||||||||||    
T  31195948 caaatgcatgcaatgttctagactcttctagatgcatgtggtacca 31195903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 554 - 610
Target Start/End: Complemental strand, 19333173 - 19333117
Alignment:
Q  554 ctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    |||||||||||||||  || ||||| |||| ||||||||||||||||||| ||||||    
T  19333173 ctatgtaaaagtacacctccttttacatttctcatatgactcaatatgactatgatg 19333117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 24554155 - 24554072
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||      || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  24554155 gtaagagtacacctcctcttacaa----caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgatg 24554072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 23638080 - 23638161
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttagaa-acattccataattaaagtataatcaa 240  Q
    |||||| |||| |||||||| ||| |||||| ||||||| ||| |||||||||   ||| | ||||||||||||||||||||    
T  23638080 acccatccatacgaataaggaaggcggtcaaccaaacgagcactaggggttagtccacagttcataattaaagtataatcaa 23638161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 16041208 - 16041164
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  16041208 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 16041164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 16042884 - 16042840
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  16042884 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 16042840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 17500517 - 17500561
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  17500517 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 17500561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 18610759 - 18610803
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  18610759 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 18610803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 479
Target Start/End: Original strand, 24906448 - 24906484
Alignment:
Q  443 tgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||||||||||||||| | |||||||||||||||    
T  24906448 tgcaatgttctagactcatcttgatgcatgtggtacc 24906484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 25608641 - 25608685
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  25608641 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 25608685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 148; Significance: 9e-78; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 160 - 607
Target Start/End: Original strand, 79050 - 79497
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccagggg--ttagaa-acattccataattaaagtataatcaattgaaagtaaacgaca 256  Q
    |||||| |||| |||||||| ||| |||||| |||||| |||| |||||  ||||   ||| | ||||||||||  |||||||| ||||||||||  |||    
T  79050 acccatccatacgaataaggtaggcggtcaaccaaacggccactaggggaattagttcacaattcataattaaac-ataatcaaatgaaagtaaataaca 79148  T
Q  257 taatttaaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagcattatcaagcactgcatataattcacctttttcaagtatt 356  Q
    |||||||||||||||||||||| ||  ||| ||||||| |||||||| |||||||||||||  |||| | |  ||| | |||| | ||||| ||||||||    
T  79149 taatttaaattcacatgattaataatctcaacatcatcataaaccattaagtatacaagcacaatcaggaaaggcacacaattaatctttt-caagtatt 79247  T
Q  357 gacaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctaga 456  Q
     ||||   ||||||||||||| ||||| |||  | |||| ||||||  |||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  79248 cacaatagtcaccaaacattcgccaatgcacagaaacactgattcacgtatccaagtatgactcaattcaccaattaacaaatgcgtgcaatgttctaga 79347  T
Q  457 ctcatttagatgcatgtggtaccattagattcaggagataattttacagtttgaacccacacccacgtaagagtacacctcctcttacgtatttcaccta 556  Q
     |||| ||||||||| |||||||||| ||||| | ||| |||||||| ||||||||||||||||||||||||||  |||||||  ||||||||| |||||    
T  79348 ttcatctagatgcatctggtaccattcgattccgaagacaattttaccgtttgaacccacacccacgtaagagt-gacctccttctacgtattttaccta 79446  T
Q  557 tgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatg 607  Q
    ||| | ||||||  || ||||| |||| |||||||||||||||||||||||    
T  79447 tgtgatagtacacctccttttacatttctcatatgactcaatatgaccatg 79497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 304 - 640
Target Start/End: Complemental strand, 8325621 - 8325288
Alignment:
Q  304 caagtatacaagcattatcaagcactgcatataattcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcat 403  Q
    ||||||||||| ||  ||| || | |||||| ||||||| || |||||||||| || || ||||||||| |||||||||| ||| ||||||||||||||     
T  8325621 caagtatacaaccagaatcgagtaatgcatacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcac 8325522  T
Q  404 atatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    |||| |||||||| |||||||    ||| || |||||  ||||||||||||||||||| |||||||||||||| ||||  || || | ||||||||||||    
T  8325521 atattcaagtatgactcgactagttaatcaataaatgtatgcaatgttctagactcatctagatgcatgtggtgccataggagtccgaagataattttac 8325422  T
Q  504 agtttgaacccacacccacgtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgac 603  Q
    |||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||| || ||||| |||| |||||||||| ||||||||    
T  8325421 agtttgaatccacacccacgtaagagtacacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgacttaatatgac 8325322  T
Q  604 catgatgttgcatggacttcaagtaagaatcgacaat 640  Q
     ||||   |||||||||||||||||||| ||||||||    
T  8325321 tatga---tgcatggacttcaagtaagactcgacaat 8325288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 163 - 503
Target Start/End: Complemental strand, 15756245 - 15755904
Alignment:
Q  163 cattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttagaa-acattccataattaaagtataatcaattgaaagtaaacgacataatt 261  Q
    ||||||||||||||||||| || ||||| ||||| |||||  ||||||||   ||| |||| || | ||  |||||||| ||||||||| ||| ||||||    
T  15756245 cattcataagaataaggcatgttgtcaatcaaacaaccact-ggggttagttcacaatccacaaattaatcataatcaaatgaaagtaagcgatataatt 15756147  T
Q  262 taaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagcattatcaagcactgcatataattcacctttttcaagtattgacaa 361  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||||||| ||| ||||| ||| ||||    
T  15756146 taaattcacatgattaacaaattcagcatcattttaaaccatcaagtatacaagcataatcaagcaatgcatacaattcacttttctcaagaattcacaa 15756047  T
Q  362 cgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcat 461  Q
    | |||||||||||||||||||| ||| ||||||| ||||   |||| |||||||| ||||| ||| |||||||||| ||| ||||||||||||||||| |    
T  15756046 caatcaccaaacattcaccaatgcacatatacactgatttgcatattcaagtatgactcgattcatcaattaacaattgcttgcaatgttctagactctt 15755947  T
Q  462 ttagatgcatgtggtaccatt-agattcaggagataattttac 503  Q
     || || |||||||||||||| | |||| ||||||||||||||    
T  15755946 ctatatacatgtggtaccattaaaattctggagataattttac 15755904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 160 - 484
Target Start/End: Original strand, 16195379 - 16195695
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccat-aattaaagtataatcaattgaaagtaaac-gaca 256  Q
    |||||| | ||| ||||||| ||| |||||| ||||||||||   ||||||||| ||||||| || ||| ||||||||||||| ||||||||| | || |    
T  16195379 acccatccttaaaaataaggtaggcggtcaaccaaacgaccattgggggttagataacattcaatcaataaaagtataatcaaatgaaagtaagccgaaa 16195478  T
Q  257 taatttaaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagcattatcaagcactgcatataattcacctttttcaagtatt 356  Q
    || ||||| |||| |||||||| ||| ||| ||||||| ||||| |||||||||||||||   ||||| || |||||| |||||||||||||  ||||||    
T  16195479 ta-tttaatttcaaatgattaataaactcaacatcatcataaactatcaagtatacaagcgcaatcaaacaatgcatacaattcaccttttttgagtatt 16195577  T
Q  357 gacaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctaga 456  Q
      | || |||||| ||  ||||||||| ||  |||||||| || || |||| ||| |||| | ||||||||||||||         | |||| |||||||    
T  16195578 tgccacaatcacc-aagtttcaccaatgcatgtatacaccaatccacatattcaaatatgacacgactcaccaatta---------tacaatattctaga 16195667  T
Q  457 ctcatttagatgcatgtggtaccattag 484  Q
    ||||| ||||||||||||||||||||||    
T  16195668 ctcatctagatgcatgtggtaccattag 16195695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 376 - 503
Target Start/End: Complemental strand, 16436508 - 16436381
Alignment:
Q  376 tcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtgg 475  Q
    |||||||| ||| |||||||||||||| |||  |||||| | ||||||||||||||  | |||||| ||| ||||||||||||| | |||||||||||||    
T  16436508 tcaccaatgcacatatacaccgattcacataatcaagtaagactcgactcaccaatagataaatgcatgctatgttctagactcttctagatgcatgtgg 16436409  T
Q  476 taccattagattcaggagataattttac 503  Q
    || |||  |||||  |||||||||||||    
T  16436408 tatcataggattccagagataattttac 16436381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 409 - 550
Target Start/End: Original strand, 26427092 - 26427235
Alignment:
Q  409 caagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtacc-attagattcaggagataatttta-cagt 506  Q
    |||||||| | |||||||||| ||| ||| ||| ||||||||||||||||| | || ||||| |||||||| ||| ||||| | ||||||||||| ||      
T  26427092 caagtatgacacgactcaccagttatcaagtgcatgcaatgttctagactcttctaaatgcacgtggtaccaattggattccgaagataattttaccata 26427191  T
Q  507 ttgaacccacacccacgtaagagtacacctcctcttacgtattt 550  Q
    ||||| |||||||||| ||||||||||||||| |||| ||||||    
T  26427192 ttgaatccacacccacataagagtacacctccacttatgtattt 26427235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 424 - 603
Target Start/End: Complemental strand, 6461468 - 6461282
Alignment:
Q  424 tcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtacca-ttagattcaggagataattttacagt-ttgaacccacaccca 521  Q
    ||||||| || ||||||| || |||||| ||||||| |  ||||||||||||||||| || ||||| | |||||||||| | || ||||| |||| ||||    
T  6461468 tcaccaactatcaaatgcatgaaatgttttagactcttcaagatgcatgtggtaccaattcgattccgaagataattttgccgtattgaatccacgccca 6461369  T
Q  522 cgtaagagtacacctcctcttacgtatttcac-----ctatgtaaaagtacatttcattttatatttttcatatgactcaatatgac 603  Q
    ||||||||||||||||| ||||| ||||||||     | |||||||||||||| ||  |||| ||| |||||| ||||||| |||||    
T  6461368 cgtaagagtacacctccacttacatatttcaccaaagcaatgtaaaagtacatctccatttacattcttcataagactcaacatgac 6461282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 304 - 503
Target Start/End: Complemental strand, 3172358 - 3172160
Alignment:
Q  304 caagtatacaagcattatcaagcactgcatataattcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcat 403  Q
    ||||||||||||||  |||||| | |||||| |||| || || |||||||||| ||||  ||||||||| | |||||||| ||| |||| ||  |||||     
T  3172358 caagtatacaagcacaatcaagtaatgcatacaattaacattgttcaagtattcacaaaaatcaccaaa-agtcaccaatgcacatatatacaaattcac 3172260  T
Q  404 atatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    |||  |||||| | ||| |||||  |||  | |||||| ||||||||| || |||| | |||||||||||||||||||  ||||| ||||||||||||||    
T  3172259 ataatcaagtacgactcaactcatgaatagataaatgcatgcaatgttttaaactcttctagatgcatgtggtaccataggattccggagataattttac 3172160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 435 - 503
Target Start/End: Complemental strand, 9128968 - 9128900
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    ||||||| | ||||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||    
T  9128968 caaatgcatacaatgttctagactcttctagatgcatgtggtaccattggattctggagataattttac 9128900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 11775817 - 11775717
Alignment:
Q  162 ccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttagaa-acattccataattaaagtataatcaattgaaagtaaacgacataat 260  Q
    |||| |||| |||||||| ||| |||||| |||||||||||  ||||||||   ||||| ||||||||||  |||||||| |||||||||||||||||||    
T  11775817 ccatccatacgaataaggtaggcggtcaaccaaacgaccactgggggttagttcacatttcataattaaaacataatcaagtgaaagtaaacgacataat 11775718  T
Q  261 t 261  Q
    |    
T  11775717 t 11775717  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 466 - 568
Target Start/End: Original strand, 16206939 - 16207040
Alignment:
Q  466 atgcatgtggtaccattagattcaggagataattttacagtttgaacccacacccacgtaagagtacacctcctcttacgtatttcacctatgtaaaagt 565  Q
    |||||||||||||||   ||||| |||| ||||||||| || |||| |||||||||| ||| |||||||| ||| |||| || ||||||||||||| |||    
T  16206939 atgcatgtggtaccaaaggattccggaggtaattttaccgtatgaatccacacccacttaaaagtacaccaccttttacata-ttcacctatgtaagagt 16207037  T
Q  566 aca 568  Q
    |||    
T  16207038 aca 16207040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 14939398 - 14939482
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  14939398 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 14939482  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 15366991 - 15367075
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  15366991 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 15367075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 424 - 480
Target Start/End: Complemental strand, 6210627 - 6210571
Alignment:
Q  424 tcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtacca 480  Q
    |||||||||| ||||||| ||||||||||||||||| | ||||||||| ||||||||    
T  6210627 tcaccaattatcaaatgcatgcaatgttctagactcttctagatgcatatggtacca 6210571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 17151105 - 17151041
Alignment:
Q  437 aatgcgtgcaatgttctagactcatttagatgcatgtggtacc-attagattcaggagataattt 500  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||| ||| ||||| |||||||||||    
T  17151105 aatgcatgcaatgttttagactcttttagatgcatgtggtaccaattggattccggagataattt 17151041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 45148180 - 45148265
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||  | |||| |||||||||| ||||  || ||||| |||| |||||||||| |||||||| ||||||    
T  45148180 gtaagagtacacctcctcttac--aattcaactatgtaaaaatacacctccttttacatttctcatatgacttaatatgactatgatg 45148265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 609
Target Start/End: Original strand, 48353959 - 48354042
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgat 609  Q
    ||||||||||||||||||||||| |   || |||||||||||| ||| || ||||| |||| ||||||||||| ||||||| |||||    
T  48353959 gtaagagtacacctcctcttacgca---caactatgtaaaagtgcatatccttttacatttctcatatgactcgatatgacaatgat 48354042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 4437468 - 4437551
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||      || |||||||||||||||| || ||||| |||| ||||||||||| ||||||| ||||||    
T  4437468 gtaagagtacacctcctcttacaa----caactatgtaaaagtacatctccttttacatttctcatatgactcgatatgactatgatg 4437551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 4444869 - 4444952
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||      || |||||||||||||||| || ||||| |||| ||||||||||| ||||||| ||||||    
T  4444869 gtaagagtacacctcctcttacaa----caactatgtaaaagtacatctccttttacatttctcatatgactcgatatgactatgatg 4444952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 598
Target Start/End: Original strand, 16207030 - 16207103
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaat 598  Q
    ||||||||||||||||||||||  | |||| |||||||||| ||||  || ||||| |||| ||||||||||||||    
T  16207030 gtaagagtacacctcctcttac--aattcaactatgtaaaattacacctccttttacatttctcatatgactcaat 16207103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 16436619 - 16436568
Alignment:
Q  266 ttcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagca 317  Q
    ||||||||||||| ||||||| ||||||| ||| ||| ||||||||||||||    
T  16436619 ttcacatgattaataaattcaacatcatcataagccaacaagtatacaagca 16436568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 20146942 - 20147044
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaattgaaagta-aacgacat 257  Q
    |||||||||||  |||| |||||  |||||| |||||||||||  |||| |||| ||||||| | |||||||||||||| || |||||||| ||||||||    
T  20146942 acccattcatataaata-ggcagacggtcaaccaaacgaccactgggggctagataacattcaacaattaaagtataattaaatgaaagtataacgacat 20147040  T
Q  258 aatt 261  Q
    ||||    
T  20147041 aatt 20147044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 39293412 - 39293365
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtaccatt 482  Q
    ||||||| ||||||||||||||||| | |||||||||| |||||||||    
T  39293412 caaatgcatgcaatgttctagactcttctagatgcatgcggtaccatt 39293365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 14974231 - 14974185
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtaccat 481  Q
    ||||||| ||||||||||||||||  | |||||||||||||||||||    
T  14974231 caaatgcttgcaatgttctagactattctagatgcatgtggtaccat 14974185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 15403707 - 15403661
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtaccat 481  Q
    ||||||| ||||||||||||||||  | |||||||||||||||||||    
T  15403707 caaatgcttgcaatgttctagactattctagatgcatgtggtaccat 15403661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 9609861 - 9609945
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||| ||||||||||  |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  9609861 gtaagagtacatctcctcttacaca---caactatgtaaaagtacacatccttttacatttctcatatgactcgatatgacaatgatg 9609945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 9837433 - 9837517
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||| ||||||||||  |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  9837433 gtaagagtacatctcctcttacaca---caactatgtaaaagtacacatccttttacatttctcatatgactcgatatgacaatgatg 9837517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 16921497 - 16921413
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || ||||||||||| |||  || ||||| |||| || |||||||| ||||||| ||||||    
T  16921497 gtaagagtacacctcctcttacgca---caactatgtaaaagaacacatccttttacatttctcttatgactcgatatgacaatgatg 16921413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 478
Target Start/End: Complemental strand, 20912066 - 20911997
Alignment:
Q  409 caagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtac 478  Q
    |||||| | |||||||| |||||||  ||| || ||||||||||||| ||| | ||||||||||||||||    
T  20912066 caagtacgactcgactctccaattataaaaggcatgcaatgttctagtctcctctagatgcatgtggtac 20911997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 557 - 610
Target Start/End: Original strand, 33558343 - 33558396
Alignment:
Q  557 tgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||  || ||||| |||| ||||||||||||||||||||| ||||    
T  33558343 tgtaaaagtacacctccttttacatttctcatatgactcaatatgaccacgatg 33558396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 8325748 - 8325696
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttag 212  Q
    |||||| |||| |||||||| ||| |||||| ||||||||||| |||||||||    
T  8325748 acccatccatacgaataaggtaggcggtcaaccaaacgaccactaggggttag 8325696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 436 - 503
Target Start/End: Original strand, 13487797 - 13487865
Alignment:
Q  436 aaatgcgtgcaatgttctagactcatttagatgcatgtggtacc-attagattcaggagataattttac 503  Q
    |||||| ||||||||||||||| | | || |||||||||||||| ||| || || ||||||||||||||    
T  13487797 aaatgcatgcaatgttctagacacttctacatgcatgtggtaccaattggactccggagataattttac 13487865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 14253005 - 14252961
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  14253005 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 14252961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 14278169 - 14278125
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | || ||||||||||||||    
T  14278169 caaatgcatgcaatgttctagactcttctaaatgcatgtggtacc 14278125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 45148082 - 45148126
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  45148082 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 45148126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 3e-77; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 163 - 503
Target Start/End: Original strand, 1560130 - 1560471
Alignment:
Q  163 cattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttagaa-acattccataattaaagtataatcaattgaaagtaaacgacataatt 261  Q
    ||||||||||||||||||| || ||||| ||||| |||||  ||||||||   ||| |||| || | ||  |||||||| ||||||||| ||| ||||||    
T  1560130 cattcataagaataaggcatgttgtcaatcaaacaaccact-ggggttagttcacaatccacaaattaatcataatcaaatgaaagtaagcgatataatt 1560228  T
Q  262 taaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagcattatcaagcactgcatataattcacctttttcaagtattgacaa 361  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||||||| ||| ||||| ||| ||||    
T  1560229 taaattcacatgattaacaaattcagcatcattttaaaccatcaagtatacaagcataatcaagcaatgcatacaattcacttttctcaagaattcacaa 1560328  T
Q  362 cgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcat 461  Q
    | |||||||||||||||||||| ||| ||||||| ||||   |||| |||||||| ||||| ||| |||||||||| ||| ||||||||||||||||| |    
T  1560329 caatcaccaaacattcaccaatgcacatatacactgatttgcatattcaagtatgactcgattcatcaattaacaattgcttgcaatgttctagactctt 1560428  T
Q  462 ttagatgcatgtggtaccatt-agattcaggagataattttac 503  Q
     || || |||||||||||||| | |||| ||||||||||||||    
T  1560429 ctatatacatgtggtaccattaaaattctggagataattttac 1560471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 400 - 610
Target Start/End: Complemental strand, 5486040 - 5485830
Alignment:
Q  400 tcatatatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataatt 499  Q
    |||||||| ||| |||| | ||||||||||| ||| || ||| ||||||||||||| ||| | ||| |||||||||||| |||  ||||   ||||||||    
T  5486040 tcatatattcaattatgacacgactcaccaaataataagtgcatgcaatgttctagtctcttctaggtgcatgtggtacaattgaattcctaagataatt 5485941  T
Q  500 ttacagtttgaacccacacccacgtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaata 599  Q
    |||| ||  ||| ||||||| |||||| |||| ||||||| | | |||||| |||||||||||||||||  || ||||| |||| |||||||||||||||    
T  5485940 ttaccgtacgaatccacaccaacgtaaaagtatacctcctttcatgtatttgacctatgtaaaagtacacatccttttacatttctcatatgactcaata 5485841  T
Q  600 tgaccatgatg 610  Q
    |||| ||||||    
T  5485840 tgactatgatg 5485830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 19841381 - 19841499
Alignment:
Q  47 aatagtctcaacataaagcaacgacaaatgtaagagtcgat--cctaatcagagtccgacactactaaacttcaaagcagataaaggaggaagcttccgc 144  Q
    |||| ||||| ||||||||||||||||| |||||| |||||  ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  19841381 aataatctcatcataaagcaacgacaaaagtaagactcgatatcctaatcagagcccgacactactaaactccaaagtagataaaggaggaagcttccgc 19841480  T
Q  145 t-acctcaagcaactcacc 162  Q
    |  |||||| |||||||||    
T  19841481 tgtcctcaaccaactcacc 19841499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 358 - 488
Target Start/End: Complemental strand, 19729121 - 19728990
Alignment:
Q  358 acaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatgg-ctcgactcaccaattaacaaatgcgtgcaatgttctaga 456  Q
    ||||| |||||||||  || | |||||||| || ||||||||||| |||| ||||||  | ||||||||||||||||| || ||| ||||||||||||||    
T  19729121 acaacaatcaccaaaagtttagcaatacacatacacaccgattcacatattcaagtaaagactcgactcaccaattaataagtgcatgcaatgttctaga 19729022  T
Q  457 ctcatttagatgcatgtggtaccattagattc 488  Q
    ||| | ||||||||||||||||||| ||||||    
T  19729021 ctcttctagatgcatgtggtaccataagattc 19728990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 525 - 610
Target Start/End: Complemental strand, 4173252 - 4173169
Alignment:
Q  525 aagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||  | ||||||||||||||||||||| || ||||| | || ||||||||||||||||||| ||||||    
T  4173252 aagagtacacctcctcttac--aattcacctatgtaaaagtacatctccttttacacttctcatatgactcaatatgactatgatg 4173169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 422 - 538
Target Start/End: Original strand, 24217339 - 24217457
Alignment:
Q  422 actcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccatta-gattcaggagataattttacagt-ttgaacccacacc 519  Q
    |||||||||||| ||| ||  ||||||||||||||||| | || ||||||||||||||| || |||||   ||||||||||||||| || || ||||||     
T  24217339 actcaccaattatcaagtgaatgcaatgttctagactcttctaaatgcatgtggtaccaataggattctatagataattttacagtattaaatccacact 24217438  T
Q  520 cacgtaagagtacacctcc 538  Q
    |||||||||||||||||||    
T  24217439 cacgtaagagtacacctcc 24217457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 4228863 - 4228778
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||  | ||||||||||||||||||||  || ||||| | || ||||||||||||||||||| ||||||    
T  4228863 gtaagagtacacctcctcttac--aattcacctatgtaaaagtacacctccttttacacttctcatatgactcaatatgactatgatg 4228778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 29162087 - 29162002
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||  | |||| |||||||||||||||| |  ||||| |||| ||||||||||||||||||| ||||||    
T  29162087 gtaagagtacacctcctcttac--aattcaactatgtaaaagtacatcttcttttacatttctcatatgactcaatatgactatgatg 29162002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 611
Target Start/End: Complemental strand, 11374428 - 11374342
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatgt 611  Q
    ||||||||||||||||||||||  | |||| ||||||||||| |||  || ||||| |||| ||||||||||||||||||| |||||||    
T  11374428 gtaagagtacacctcctcttac--aattcaactatgtaaaaggacacctccttttacatttctcatatgactcaatatgactatgatgt 11374342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 29604179 - 29604263
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  29604179 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 29604263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 32350692 - 32350776
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||  |   || |||||||||||| ||| || ||||| |||| ||||||||||||||||||| ||||||    
T  32350692 gtaagagtacacctcctcttacaaa---caactatgtaaaagtgcatctccttttacatttctcatatgactcaatatgactatgatg 32350776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 12484690 - 12484781
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaattgaaagtaaa 251  Q
    |||||||||||| |||| |||||  |||||| ||||| |||||  ||||||||| ||||||||| || |||||||||||||| ||||||||||    
T  12484690 acccattcataaaaata-ggcagacggtcaaccaaacaaccacatggggttagataacattccacaagtaaagtataatcaaatgaaagtaaa 12484781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 602
Target Start/End: Complemental strand, 17375329 - 17375252
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatga 602  Q
    ||||||||||| ||||||||||  | |||| ||||||||||||| |  || ||||| |||| ||||||||||||||||||    
T  17375329 gtaagagtacaactcctcttac--aattcaactatgtaaaagtagacctccttttacatttctcatatgactcaatatga 17375252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 610
Target Start/End: Complemental strand, 15006230 - 15006147
Alignment:
Q  524 taagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||  || | || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  15006230 taagagtacacctcctctta--taat-caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgatg 15006147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 524 - 593
Target Start/End: Complemental strand, 22363753 - 22363687
Alignment:
Q  524 taagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgac 593  Q
    |||||||||||||||||||||| |   || ||||||||||| |||| || ||||| ||||||||||||||    
T  22363753 taagagtacacctcctcttacgca---caactatgtaaaagaacatctccttttacatttttcatatgac 22363687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 12466222 - 12466177
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacca 480  Q
    ||||||| ||||||||||||||||| | |||||| |||||||||||    
T  12466222 caaatgcatgcaatgttctagactcttctagatgtatgtggtacca 12466177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 31162561 - 31162516
Alignment:
Q  434 acaaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    |||||||| ||||||||||||||||| | |||||||||| ||||||    
T  31162561 acaaatgcatgcaatgttctagactcttctagatgcatgcggtacc 31162516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 35010985 - 35010940
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacca 480  Q
    ||||||| ||||||||||||||||| | |||||||||| |||||||    
T  35010985 caaatgcatgcaatgttctagactcttctagatgcatgcggtacca 35010940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 6777710 - 6777774
Alignment:
Q  177 aggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaa 240  Q
    ||||||| ||||||   ||||||||| |||||||||| ||||||| | |||||||||||||||||    
T  6777710 aggcaggcggtcaactgaacgaccactaggggttagataacattcaacaattaaagtataatcaa 6777774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 14796697 - 14796757
Alignment:
Q  192 caaacgaccaccaggggttaga-aacattccataattaaagtataatcaattgaaagtaaa 251  Q
    |||||||||||| | ||||||| |||| |||| || |||||||||||||| ||||||||||    
T  14796697 caaacgaccaccggaggttagataacagtccacaaataaagtataatcaaatgaaagtaaa 14796757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 19627829 - 19627873
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  19627829 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 19627873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 22595165 - 22595121
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  22595165 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 22595121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 420 - 610
Target Start/End: Original strand, 27050223 - 27050414
Alignment:
Q  420 cgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttacagt-ttgaacccacac 518  Q
    ||||||||||| |||||||||| |||||||||||| |||  | ||||||||||| |||||||| ||||| | | ||||| |||| || ||||| ||||||    
T  27050223 cgactcaccaactaacaaatgcatgcaatgttctatactattctagatgcatgtagtaccattggattccgaaaataatcttaccgtattgaatccacac 27050322  T
Q  519 ccacgtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||  || ||||| |||| |||||||||| |||||||| ||||||    
T  27050323 ccacgtaagagtacacatcctcttacgtatttcacctatgtaaaagtacacctctttttacatttctcatatgacttaatatgactatgatg 27050414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 306 - 503
Target Start/End: Complemental strand, 8853720 - 8853523
Alignment:
Q  306 agtatacaagcattatcaagcactgcatataattcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcatat 405  Q
    ||||||||||||  ||||||||  | ||| |||||| | |||||||||||| ||||| |||||||||  ||||||||| ||| |||||||||||||| ||    
T  8853720 agtatacaagcacaatcaagcaaggtatacaattcatcgttttcaagtattcacaacaatcaccaaaagttcaccaatgcacatatacaccgattcacat 8853621  T
Q  406 atccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    || |||||||| ||||||||||||||||  |||||| ||||||||||||||||||| |||||| ||||| ||||||  ||||| ||||||||||||||    
T  8853620 attcaagtatgactcgactcaccaattattaaatgcatgcaatgttctagactcatctagatgtatgtgataccataggattctggagataattttac 8853523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 163 - 503
Target Start/End: Complemental strand, 19633724 - 19633407
Alignment:
Q  163 cattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaattgaaagtaaacgacataatt 261  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||| |||| | ||||||||||| | |||||  ||||||||||||||||||||    
T  19633724 cattcataagaataaggcaggtggtcaaccaaacgaccactgggggttagataacaattcataattaaagcacaatcagatgaaagtaaacgacataatt 19633625  T
Q  262 taaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagcattatcaagcactgcatataattcacctttttcaagtattgacaa 361  Q
    ||||||||||||||||                 |||| |||  |||||||||||||  ||||| || |||||| ||||||||||||||          |     
T  19633624 taaattcacatgatta-----------------ttaagccaaaaagtatacaagcaaaatcaaacaatgcatacaattcacctttttc---------gat 19633551  T
Q  362 cgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaa-caaatgcgtgcaatgttctagactca 460  Q
    | |||||||||  ||||||||| ||| |||||||| ||||| ||||| |||| || |||||||||||||| || || |||| ||||||||||||||||||    
T  19633550 caatcaccaaaatttcaccaatgcacatatacaccaattcacatatcaaagtttgactcgactcaccaatgaatcatatgcatgcaatgttctagactca 19633451  T
Q  461 tttagatgcatgtggtaccatta-gattcaggagataattttac 503  Q
    | |||||||| || | ||||||| ||||| ||||||||||||||    
T  19633450 tctagatgcacgtcgcaccattaggattccggagataattttac 19633407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 351 - 503
Target Start/End: Complemental strand, 16220481 - 16220329
Alignment:
Q  351 agtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgt 450  Q
    |||||| ||||| ||||||| |  ||||||||| ||||||||||| |||||| ||||||||||||  ||||||||||||||||  |||||| ||||||||    
T  16220481 agtattcacaacaatcaccagaagttcaccaatgcacttatacactgattcacatatccaagtattactcgactcaccaattattaaatgcatgcaatgt 16220382  T
Q  451 tctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    | |||||| || |||||||||||||||||||  ||||  ||||||||||||||    
T  16220381 tttagacttatctagatgcatgtggtaccatgggattatggagataattttac 16220329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 233 - 481
Target Start/End: Original strand, 10724780 - 10725026
Alignment:
Q  233 ataatcaattgaaagtaaacgacataatttaaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagcattatcaagcactgca 332  Q
    |||||||| ||||| ||| | |||||||| || | || |||||||| || |||| ||||||| |||  |  ||||||||||| ||  ||| || | ||||    
T  10724780 ataatcaaatgaaa-taatcaacataattcaattccatatgattaataatttcaacatcatcataagtccacaagtatacaaacacaatcgagtaatgca 10724878  T
Q  333 tataattcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaatt 432  Q
    ||  ||||||||||||||||||||  |||| ||||||||| |||||||||| ||| ||||||| ||||||  ||  |||||| | ||||||||||||||     
T  10724879 tacgattcacctttttcaagtattcgcaacaatcaccaaa-attcaccaatgcacatatacacagattcacgtaatcaagtacgactcgactcaccaata 10724977  T
Q  433 aacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccat 481  Q
     | |||| | |||||| |||||||||||| ||||||||| || ||||||    
T  10724978 gataaattcatgcaatattctagactcatctagatgcatttgataccat 10725026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 338 - 503
Target Start/End: Original strand, 13438455 - 13438621
Alignment:
Q  338 ttcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaacaa 437  Q
    |||||||| |||||||||| |||||| ||||||||  ||||||||| ||| |||||||| |||||  ||  |||||| | |||||||  |||| ||| ||    
T  13438455 ttcaccttgttcaagtattcacaacggtcaccaaat-ttcaccaatgcacgtatacaccaattcacgtaatcaagtacgactcgactacccaaataataa 13438553  T
Q  438 at--gcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    ||  || ||||||||||||||||| | |||||||||||||||||||  |||||  |||||||||||||    
T  13438554 atatgcatgcaatgttctagactcttctagatgcatgtggtaccataggattccagagataattttac 13438621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 160 - 278
Target Start/End: Original strand, 15956723 - 15956842
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaattgaaagtaaa-cgacat 257  Q
    |||||||||||||||||| ||||| |||||||||||| |||||  ||| ||| | |||||| || |||||||||| |||||| |||||||||| ||||||    
T  15956723 acccattcataagaataaagcaggcggtcaaacaaactaccactggggattatataacatttcacaattaaagtacaatcaaatgaaagtaaagcgacat 15956822  T
Q  258 aatttaaattcacatgattaa 278  Q
    || |||| |||| ||||||||    
T  15956823 aa-ttaatttcaaatgattaa 15956842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 17760011 - 17759926
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||| ||||  | |||| |||||||||||||||| || ||||| |||| ||||||||||||||||||| ||||||    
T  17760011 gtaagagtacacctccttttac--aattcaactatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatg 17759926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 19061331 - 19061246
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||| ||||  | |||| |||||||||||||||| || ||||| |||| ||||||||||||||||||| ||||||    
T  19061331 gtaagagtacacctccttttac--aattcaactatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatg 19061246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 521 - 610
Target Start/End: Complemental strand, 43429119 - 43429033
Alignment:
Q  521 acgtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    |||||||||||||||||||||||||    ||| ||||||||||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||    
T  43429119 acgtaagagtacacctcctcttacga---tcaactatgtaaaagtacacttccttttacatttctcatatgactcgatatgactatgatg 43429033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 502
Target Start/End: Original strand, 8022737 - 8022818
Alignment:
Q  421 gactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataatttta 502  Q
    |||||||||| |||  ||| | |||||||||||||| || | |||||||||||||||||||| ||||| |||||||||||||    
T  8022737 gactcaccaaataatgaattcatgcaatgttctagaatcttctagatgcatgtggtaccattggattccggagataatttta 8022818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 478
Target Start/End: Original strand, 17385339 - 17385393
Alignment:
Q  424 tcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtac 478  Q
    |||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||    
T  17385339 tcaccaattatcaaatgcatgcaatgttctagactcttctagatgcatgtggtac 17385393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 477
Target Start/End: Original strand, 6808899 - 6808956
Alignment:
Q  420 cgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggta 477  Q
    |||||||||||||| ||| ||| ||||||||||||||||| | |||||||||||||||    
T  6808899 cgactcaccaattatcaagtgcatgcaatgttctagactcttctagatgcatgtggta 6808956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 443 - 503
Target Start/End: Complemental strand, 12254450 - 12254390
Alignment:
Q  443 tgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    ||||||||||||||||| | || ||||||||||||||||  ||||| ||||||||||||||    
T  12254450 tgcaatgttctagactcttctaaatgcatgtggtaccataggattccggagataattttac 12254390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 164 - 278
Target Start/End: Complemental strand, 8854005 - 8853891
Alignment:
Q  164 attcataagaataaggcaggtggtcaaacaaacgaccaccaggggttag-aaacattccataattaaagtataatcaattgaaagtaaacgacataattt 262  Q
    |||||||||||||||| ||| |||||| ||||||||||| | |||||||   ||| | || |||||||  |||||||| ||||||||||   ||||||||    
T  8854005 attcataagaataaggtaggcggtcaaccaaacgaccactaagggttagtccacaattcacaattaaa-cataatcaaatgaaagtaaatagcataattt 8853907  T
Q  263 aaattcacatgattaa 278  Q
    ||||||||||| ||||    
T  8853906 aaattcacatgtttaa 8853891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 481
Target Start/End: Original strand, 11401078 - 11401124
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtaccat 481  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||    
T  11401078 caaatgcatgcaatgttctagactcttctagatgcatgtggtaccat 11401124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 4147257 - 4147173
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    |||||||||||||||||||||||     || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  4147257 gtaagagtacacctcctcttacgcg---caactatgtaaaagtacacctccttttaaatttctcatatgactcgatatgacgatgatg 4147173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 14817276 - 14817192
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||||||| || || || ||||| |||| ||||||||||| ||||||| ||||||    
T  14817276 gtaagagtacacctcctcttacgca---caactatgtaaaaatatatctccttttacatttctcatatgactcgatatgacgatgatg 14817192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 54040249 - 54040205
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||    
T  54040249 caaatgcatgcaatgttctagactcttctagatgcatgtggtacc 54040205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 54049536 - 54049492
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||    
T  54049536 caaatgcatgcaatgttctagactcttctagatgcatgtggtacc 54049492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 443 - 516
Target Start/End: Complemental strand, 21094282 - 21094208
Alignment:
Q  443 tgcaatgttctagactcatttagatgcatgtggtacc-attagattcaggagataattttacagtttgaacccac 516  Q
    ||||||||||||||| | | || |||||||||||||| ||| ||||| |||||||||||||| || |||| ||||    
T  21094282 tgcaatgttctagacacttctacatgcatgtggtaccaattggattccggagataattttaccgtgtgaatccac 21094208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 4163764 - 4163680
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    |||| |||||||||||| ||||| |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  4163764 gtaacagtacacctccttttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 4163680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 6808618 - 6808671
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga 213  Q
    ||||||||||| |||||||| |||  ||||| ||||||||||| ||||||||||    
T  6808618 acccattcatacgaataaggtaggcagtcaaccaaacgaccactaggggttaga 6808671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 17320157 - 17320073
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||| ||||||     ||| |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  17320157 gtaagagtacacctcttcttacaa---tcaactatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgatg 17320073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Original strand, 17391839 - 17391884
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacca 480  Q
    ||||||| |||||||||| |||||| | ||||||||||||||||||    
T  17391839 caaatgcatgcaatgttcaagactcttctagatgcatgtggtacca 17391884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 18968708 - 18968792
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    |||||||||||||||||||||   |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  18968708 gtaagagtacacctcctcttataca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatg 18968792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 25105626 - 25105581
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacca 480  Q
    ||||||| ||||||||||||||||| | ||| ||||||||||||||    
T  25105626 caaatgcatgcaatgttctagactcctctaggtgcatgtggtacca 25105581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 9637774 - 9637722
Alignment:
Q  428 caattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtacca 480  Q
    |||||| ||||||| || |||||||||||||| | ||| ||||||||||||||    
T  9637774 caattatcaaatgcatgtaatgttctagactcttctagctgcatgtggtacca 9637722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 15551169 - 15551125
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  15551169 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 15551125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 435 - 641
Target Start/End: Complemental strand, 20641 - 20434
Alignment:
Q  435 caaatgcgtgcaatgttctagactcattt--agatgcatgtggtacca-ttagattcaggagataattttacagt-ttgaacccacacccacgtaagagt 530  Q
    ||||||| |||| |||||||||||| | |  ||||||||||||||||| || ||||| ||| ||||| |||| || ||||| ||||||||||||||||||    
T  20641 caaatgcttgcagtgttctagactcttctctagatgcatgtggtaccagttggattccggatataatcttaccgtattgaatccacacccacgtaagagt 20542  T
Q  531 acacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatgttgcatggacttcaagtaag 630  Q
    | | ||||||||||||||||||||||||||||||||||  || ||||| |||| ||||||||||||||||||| ||||   |||||||||||||||||||    
T  20541 aaaactcctcttacgtatttcacctatgtaaaagtacacctccttttacatttctcatatgactcaatatgactatga---tgcatggacttcaagtaag 20445  T
Q  631 aatcgacaatg 641  Q
    | |||||||||    
T  20444 actcgacaatg 20434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 21221 - 21143
Alignment:
Q  162 ccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttagaaacattccataattaaagtataatcaa 240  Q
    |||||||||||||||||||||| | | || |||||||||||  ||||||||||||||  |||| ||||| |||||||||    
T  21221 ccattcataagaataaggcaggcgattaatcaaacgaccacgcggggttagaaacatctcatagttaaattataatcaa 21143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 424 - 568
Target Start/End: Complemental strand, 4194 - 4049
Alignment:
Q  424 tcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattag-attcaggagataattttacagtttgaacccacacccac 522  Q
    |||||||||||||| ||| |||||| |||||||||| | |||||||||||||||||||| | |||  || ||||||||||| || |||| ||||| ||||    
T  4194 tcaccaattaacaagtgcatgcaatattctagactcttctagatgcatgtggtaccatttggattatggggataattttaccgtatgaatccacatccac 4095  T
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtaca 568  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||    
T  4094 gtaagagtacacatcctcttacgtatttcacctatgtaagagtaca 4049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 523 - 641
Target Start/End: Complemental strand, 4059 - 3946
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatgttgcatggactt 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  || ||||| |||| |||||||||| ||||||||     || |||||||| ||    
T  4059 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacacatccttttacatttctcatatgacttaatatgac-----tgatgcatggaatt 3965  T
Q  623 caagtaagaatcgacaatg 641  Q
    ||||||||| |||| ||||    
T  3964 caagtaagactcgaaaatg 3946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 409 - 553
Target Start/End: Original strand, 37278042 - 37278188
Alignment:
Q  409 caagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtacca-ttagattcaggagataattttacagt- 506  Q
    |||||||| | | |||||||||||| ||| ||| ||||||||||||||||| ||||||| || ||||||||| || ||||| ||||||||||||||||      
T  37278042 caagtatgacacaactcaccaattatcaagtgcatgcaatgttctagactcttttagatacacgtggtaccaattggattccggagataattttacagca 37278141  T
Q  507 ttgaacccacacccacgtaagagtacacctcctcttacgtatttcac 553  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  37278142 ttgaatccacacccacgtaagagtacacctccacttacgtatttcac 37278188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 22446876 - 22447147
Alignment:
Q  16 caaaacataagtaatatctcaatagtcaaataatagtctcaacataaagcaacgacaaatgtaagagtcga--tcctaatcagagtccgacactactaaa 113  Q
    ||||||||||| |||||||||||||||  ||| || |||||||||||| |||||||||| |||||| ||||  ||||| |||||| ||||||| ||||||    
T  22446876 caaaacataaggaatatctcaatagtcggatagtaatctcaacataaatcaacgacaaaagtaagactcgatctcctagtcagagcccgacacgactaaa 22446975  T
Q  114 cttcaaagcagataaaggaggaagcttccgcta-cctcaagcaact-------cacccattcataagaataaggcaggtggtcaaacaaacgaccaccag 205  Q
    || ||||||| ||||||||||||||||||  || |||||| |||||       |||||||||||| |||||||| ||| | |||| |||||||| || |     
T  22446976 ctccaaagcaaataaaggaggaagcttcctttatcctcaaacaactcaccaagcacccattcatacgaataaggtaggcgatcaaccaaacgactacta- 22447074  T
Q  206 gggttag-aaacattccataattaaagtataatcaattgaaagtaaacgacataatttaaattcacatgattaa 278  Q
    |||||||   ||| | |||||||||| ||||||||| ||||| ||||| |||||| ||||||| | ||||||||    
T  22447075 gggttagttcacaattcataattaaa-tataatcaagtgaaaataaacaacataaattaaattaaaatgattaa 22447147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 404 - 503
Target Start/End: Original strand, 25340898 - 25340998
Alignment:
Q  404 atatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccatta-gattcaggagataatttta 502  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||  ||||||||||||    
T  25340898 atatccaagtatgactcgactcaccaattaacaaatgcatgcaatgttctagactcatctagatgcatgtggtaccattaggattccagagataatttta 25340997  T
Q  503 c 503  Q
    |    
T  25340998 c 25340998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 243 - 487
Target Start/End: Complemental strand, 19318356 - 19318114
Alignment:
Q  243 gaaagtaaacgacataatttaaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagcattatcaagcactgcatataattcac 342  Q
    ||||||||  ||||||||  |||||||||||||||| |||||||||||| |  |||  | |||| ||||||| ||  |||||| | ||||||  ||||||    
T  19318356 gaaagtaattgacataatcaaaattcacatgattaataaattcagcatctttataattcctcaaatatacaaacac-atcaagtagtgcataccattcac 19318258  T
Q  343 ctttttcaagtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaacaaatgcg 442  Q
    ||| || ||| ||| |||||| ||||||||  ||||  ||| ||| |||||||| || || |||  |||||| | ||||||||||||| ||| ||||||     
T  19318257 cttatttaagcattcacaacggtcaccaaat-ttcattaatgcacgtatacaccaatacacataatcaagtacgactcgactcaccaaataataaatgca 19318159  T
Q  443 tgcaatgttctagactcatttagatgcatgtggtaccattagatt 487  Q
    || |||||||||||||| | ||||||||||||||||||| |||||    
T  19318158 tgtaatgttctagactcttctagatgcatgtggtaccataagatt 19318114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 532
Target Start/End: Original strand, 37275771 - 37275896
Alignment:
Q  409 caagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtacc-attagattcaggagataattttacagt- 506  Q
    |||||||| | | |||||||||||| ||| ||| ||||||||||||| ||| | || || ||||||||||| ||| ||||| |||||||||||||| ||     
T  37275771 caagtatgacacaactcaccaattatcaagtgcatgcaatgttctaggctcttctaaatacatgtggtaccaattggattccggagataattttaccgta 37275870  T
Q  507 ttgaacccacacccacgtaagagtac 532  Q
    ||||| ||||||||||||||||||||    
T  37275871 ttgaatccacacccacgtaagagtac 37275896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 10179074 - 10179000
Alignment:
Q  164 attcataagaataaggcaggtggtcaaacaaacgaccaccaggggttagaaacattccataattaaagtataatcaa 240  Q
    |||||||||||||||||||| |||||| | |||||||||   |||||||  |||||| |||||||||||||||||||    
T  10179074 attcataagaataaggcaggcggtcaaccgaacgaccac--tgggttagccacattctataattaaagtataatcaa 10179000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 29912670 - 29912754
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  29912670 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 29912754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 501
Target Start/End: Original strand, 19266820 - 19266944
Alignment:
Q  375 ttcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtg 474  Q
    ||||||||  ||| |||||||| ||||| |||  |||||||| ||||||||||||| | |||| | ||  || |||| ||||||| | |||||||||||     
T  19266820 ttcaccaaagcacgtatacaccaattcacataatcaagtatgactcgactcaccaaatcacaagtacg--cattgttgtagactcttctagatgcatgta 19266917  T
Q  475 gtaccattagattcaggagataatttt 501  Q
    |||||||  ||||| ||||||||||||    
T  19266918 gtaccataggattctggagataatttt 19266944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 549 - 610
Target Start/End: Original strand, 21108171 - 21108232
Alignment:
Q  549 ttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    |||| |||||||||||||||  || ||||| |||| ||||||||||||||||||| ||||||    
T  21108171 ttcaactatgtaaaagtacacctccttttacatttctcatatgactcaatatgactatgatg 21108232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 24082727 - 24082811
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  || ||||| |||| ||||| ||||| ||||||| ||||||    
T  24082727 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatacgactcgatatgacgatgatg 24082811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 17362458 - 17362550
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaattgaaagtaaa 251  Q
    |||||| |||| ||||||||  ||||||||| ||||||||||   ||||||||| |||| | || ||||||||||||||||| | ||||||||    
T  17362458 acccatccatacgaataaggttggtggtcaaccaaacgaccattgggggttagataacacttcacaattaaagtataatcaaattaaagtaaa 17362550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 443 - 477
Target Start/End: Complemental strand, 33627927 - 33627893
Alignment:
Q  443 tgcaatgttctagactcatttagatgcatgtggta 477  Q
    ||||||||||||||||||| |||||||||||||||    
T  33627927 tgcaatgttctagactcatgtagatgcatgtggta 33627893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 355
Target Start/End: Original strand, 25340788 - 25340877
Alignment:
Q  266 ttcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagcattatcaagcactgcatataattcacctttttcaagtat 355  Q
    |||| |||||||| ||| ||| ||||||| |||| ||||||||||||||| |  | |||||| ||| || || ||||||||||| |||||    
T  25340788 ttcaaatgattaataaactcaacatcatcataaatcatcaagtatacaagtacaaccaagcaatgcgtaaaactcacctttttcgagtat 25340877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Original strand, 34937950 - 34937995
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacca 480  Q
    ||||||| ||||||||||||||||| | |||||||||| |||||||    
T  34937950 caaatgcatgcaatgttctagactcttctagatgcatgcggtacca 34937995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 14343550 - 14343506
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| |||||||||| |||||| | |||||||||||||||||    
T  14343550 caaatgcatgcaatgttccagactcttctagatgcatgtggtacc 14343506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 602
Target Start/End: Complemental strand, 26561340 - 26561292
Alignment:
Q  554 ctatgtaaaagtacatttcattttatatttttcatatgactcaatatga 602  Q
    |||||||||||||||  || ||||| |||| ||||||||||||||||||    
T  26561340 ctatgtaaaagtacacctccttttacatttctcatatgactcaatatga 26561292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 221 - 448
Target Start/End: Original strand, 12415100 - 12415319
Alignment:
Q  221 cataattaaagtataatcaattgaaagtaaacgacataatttaaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagcatta 320  Q
    ||||||||||| |||||||| ||||||||||  ||||  ||||| | ||||||||||| ||| ||| ||||||| |||| ||| ||||| |||||||  |    
T  12415100 cataattaaagcataatcaaatgaaagtaaataacattgtttaattccacatgattaataaaatcaacatcatcataaatcattaagtacacaagcacaa 12415199  T
Q  321 tcaagcactgcatataattcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatggctc 420  Q
    ||||||| |||||| ||||||| |||||| ||||||  |||| |||||||||        ||| ||| |||||||||||||| ||||||||||||| |||    
T  12415200 tcaagcaatgcatacaattcacttttttcgagtattcgcaacaatcaccaaa--------aattcacatatacaccgattcacatatccaagtatgactc 12415291  T
Q  421 gactcaccaattaacaaatgcgtgcaat 448  Q
    ||| ||| |||||| |||| ||||||||    
T  12415292 gacccacaaattaagaaatacgtgcaat 12415319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 435 - 594
Target Start/End: Original strand, 19076290 - 19076452
Alignment:
Q  435 caaatgcgtgcaatgttctagactcat--ttagatgcatgtggtaccattagattcaggagataattttacagt-ttgaacccacacccacgtaagagta 531  Q
    ||||||| ||||||||||||||||  |  ||||||||||||||||||||| ||||| ||||||||| |||| || ||||| |||||||||| ||||||||    
T  19076290 caaatgcatgcaatgttctagacttttctttagatgcatgtggtaccattggattccggagataatattactgtattgaatccacacccacataagagta 19076389  T
Q  532 cacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgact 594  Q
    || ||||||||||||||||||| || |||||| ||||  || ||||| |||  ||||||||||    
T  19076390 catctcctcttacgtatttcacatacgtaaaaatacacctccttttacattcctcatatgact 19076452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 331 - 503
Target Start/End: Complemental strand, 18667951 - 18667778
Alignment:
Q  331 catataattcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatgg-ctcgactcacca 429  Q
    ||||||||||| ||| | |||||||| ||||| |||||||||  ||||||||| ||| |||| || |||||| |||| |||||| || ||||||||||||    
T  18667951 catataattcatcttgtgcaagtattcacaacaatcaccaaaagttcaccaatgcacatatatactgattcacatattcaagtaaggactcgactcacca 18667852  T
Q  430 attaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    | ||| || | | |||||||||||| |||| | ||||||||||||||||| |  ||||| ||||||||||||||    
T  18667851 agtaataagtacatgcaatgttctatactcttctagatgcatgtggtaccgtaggattctggagataattttac 18667778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 160 - 430
Target Start/End: Original strand, 5889573 - 5889843
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttagaa-acattccataattaaagtataatcaattgaaagtaaacgacata 258  Q
    |||||||||||||||||||| ||| |||||| ||||||||||  |||||||||   ||| || | ||| ||   |||||||| ||||||||||   ||||    
T  5889573 acccattcataagaataaggtaggcggtcaaccaaacgaccattaggggttagttcacaatc-acaataaac--ataatcaaatgaaagtaaattgcata 5889669  T
Q  259 atttaaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagcattatcaagcactgcatataattcacctttttcaagtattga 358  Q
    ||||||||||||||| |||| ||  ||| ||||||| |||| |||  ||||| ||||||  |||||| |  | |||  ||||||||||||| |||||| |    
T  5889670 atttaaattcacatgtttaaaaacctcaacatcatcataaatcattgagtatgcaagcacaatcaaggaaggaatactattcacctttttcgagtattca 5889769  T
Q  359 caacgatcaccaaacattcaccaatacacttatacaccgatt--catatatccaagtatggctcgactcaccaa 430  Q
    | ||||||||||||  ||||||||| ||| ||||||| ||||  ||||||| |||||||| || ||||||||||    
T  5889770 cgacgatcaccaaaatttcaccaatgcacatatacactgattcacatatattcaagtatgacttgactcaccaa 5889843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 331 - 503
Target Start/End: Complemental strand, 18713623 - 18713450
Alignment:
Q  331 catataattcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaagtatgg-ctcgactcacca 429  Q
    ||||||||||| ||| | |||||||| ||||| |||||||||  ||||||||| ||| |||| ||||||||| ||||||||||| || ||||||||||||    
T  18713623 catataattcatcttgtgcaagtattcacaacaatcaccaaaagttcaccaatgcacatatataccgattcacatatccaagtaaggactcgactcacca 18713524  T
Q  430 attaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    | ||| || | | || |||||| || |||| | |||||||||||||||||||   ||||  |||||||||||||    
T  18713523 agtaataagtacatgtaatgttttatactcttctagatgcatgtggtaccatagaattccagagataattttac 18713450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 515 - 603
Target Start/End: Original strand, 14617746 - 14617834
Alignment:
Q  515 acacccacgtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgac 603  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||||||| |||||  |||||||| |||| |||||||||||||||||||    
T  14617746 acacccatgtaagattacacctcctcctacgtatttcacctatgtaaaggtacacctcattttacatttctcatatgactcaatatgac 14617834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 428 - 608
Target Start/End: Complemental strand, 10116053 - 10115866
Alignment:
Q  428 caattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtac-cattagattcaggagataattttacagt-ttgaacccacacccacgta 525  Q
    |||||| ||||||| ||||||||||||||||| |||  |||||||||||||  ||||||||| | | |||||||||| || ||||| ||||||| | |||    
T  10116053 caattatcaaatgcatgcaatgttctagactctttttaatgcatgtggtactaattagattctgaatataattttaccgtattgaatccacaccaatgta 10115954  T
Q  526 agagtacacctcctcttacgtatttc-----acctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatga 608  Q
    ||||||||||||| ||||||||||||     | | |||||||||||||  ||  |||| ||| |||||| ||||||||||||| ||||    
T  10115953 agagtacacctccacttacgtatttccccaaagcaatgtaaaagtacacctccatttacattcttcataagactcaatatgactatga 10115866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 392 - 641
Target Start/End: Complemental strand, 18420605 - 18420351
Alignment:
Q  392 acaccgattcatatatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattaga-ttcag 490  Q
    ||||| ||||| |||  |||||||| | ||||||||||||||  || ||| |||||||||||| |||| | || |||||| | |||||| |||| ||| |    
T  18420605 acaccaattcacatagtcaagtatgacacgactcaccaattataaagtgcatgcaatgttctatactcttctaaatgcatatagtaccaatagaattctg 18420506  T
Q  491 gagataattttacagtttg-aacccacacccacgtaagagtacacctcctcttacgtatttcac-----ctatgtaaaagtacatttcattttatatttt 584  Q
    ||||||||||||| ||||  ||  | |||||||||||||||||||||||  |||||||||||||     | |||||||| ||||  ||  |||| |||      
T  18420505 gagataattttaccgtttttaattctcacccacgtaagagtacacctccagttacgtatttcaccaacgcaatgtaaaattacacctccatttacattca 18420406  T
Q  585 tcatatgactcaatatgaccatgatgttgcatggacttcaagtaagaatcgacaatg 641  Q
    ||||| ||||||| ||||| ||||   |||||||||||||||||||| |||||||||    
T  18420405 tcataagactcaacatgactatga--atgcatggacttcaagtaagactcgacaatg 18420351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 420 - 503
Target Start/End: Original strand, 14616495 - 14616578
Alignment:
Q  420 cgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    |||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||||| ||| |||||  |||||||||||||    
T  14616495 cgactcaccaattaacaagtgcatgcaatgttctagactcctctagatgcatgtggtactattggattcttgagataattttac 14616578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 424 - 498
Target Start/End: Original strand, 20847388 - 20847463
Alignment:
Q  424 tcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtacc-attagattcaggagataat 498  Q
    |||||||| | ||||||| ||||||||||||||||| | ||||| ||||||||||| ||| ||||| |||||||||    
T  20847388 tcaccaatgatcaaatgcatgcaatgttctagactcttctagatacatgtggtaccaattggattccggagataat 20847463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 278
Target Start/End: Original strand, 9197377 - 9197488
Alignment:
Q  167 cataagaataaggcaggtggtcaaacaaacgaccaccaggggttagaa-acattccataattaaagtataatcaattgaaagtaaacgacataatttaaa 265  Q
    |||| |||||||| |||| ||||| ||||||||||   ||||||||   ||||| || ||||||||||||||||| ||||| | |||| ||||| |||||    
T  9197377 catacgaataaggtaggtagtcaaccaaacgaccattgggggttagttcacatttcacaattaaagtataatcaaatgaaaatgaacgccataa-ttaaa 9197475  T
Q  266 ttcacatgattaa 278  Q
    |||| ||||||||    
T  9197476 ttcaaatgattaa 9197488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 610
Target Start/End: Original strand, 12732764 - 12732847
Alignment:
Q  524 taagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||    ||| |||||||||||||||  |  ||||| |||| ||||||||||| ||||||| ||||||    
T  12732764 taagagtacacctcctcttacga---tcaactatgtaaaagtacaccttcttttacatttctcatatgactcgatatgactatgatg 12732847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 19076130 - 19076170
Alignment:
Q  162 ccattcataagaataaggcaggtggtcaaacaaacgaccac 202  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  19076130 ccattcataagaataaggcaggaggtcaaccaaacgaccac 19076170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 11774668 - 11774731
Alignment:
Q  254 acataatttaaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagca 317  Q
    |||||||| || ||||||||||||| ||||||| |||| || ||| ||| ||||||||||||||    
T  11774668 acataattcaatttcacatgattaataaattcaacatcgtcataagccaacaagtatacaagca 11774731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 17957339 - 17957418
Alignment:
Q  173 aataaggcaggtggtcaaacaaacgaccaccaggggttagaa-acattccataattaaagtataatcaattgaaagtaaa 251  Q
    ||||||| ||| |||||| ||||||||||   ||||||||   ||||||||||||||||||||||| || ||||||||||    
T  17957339 aataaggtaggcggtcaaccaaacgaccattgggggttagttcacattccataattaaagtataataaaatgaaagtaaa 17957418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 523 - 603
Target Start/End: Original strand, 18275435 - 18275512
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgac 603  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  || ||||  |||| ||||||||||| |||||||    
T  18275435 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttccatttatcatatgactcgatatgac 18275512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 11774826 - 11774879
Alignment:
Q  418 ctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcat 471  Q
    |||||||||| || ||  |||||| ||||||||||||||||||| |||||||||    
T  11774826 ctcgactcacaaaatattaaatgcatgcaatgttctagactcatctagatgcat 11774879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 19699275 - 19699231
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  19699275 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 19699231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 19709860 - 19709816
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  19709860 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 19709816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 40902407 - 40902363
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  40902407 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 40902363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 516 - 609
Target Start/End: Complemental strand, 1576 - 1483
Alignment:
Q  516 cacccacgtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgat 609  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||| ||||||||||||||||||| |||||    
T  1576 cacccacgtaagagtacacctcctcttaagtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgat 1483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 4420 - 4339
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttag-aaacattccataattaaagtataatcaa 240  Q
    ||||||||||||||||||| |||  |||||| |||||||||||  ||||||||    ||||||| |||||||||||||||||    
T  4420 acccattcataagaataagacagccggtcaaccaaacgaccacttggggttagttcgcattccacaattaaagtataatcaa 4339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 410 - 502
Target Start/End: Complemental strand, 101177 - 101084
Alignment:
Q  410 aagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccatta-gattcaggagataatttta 502  Q
    ||||||| ||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  101177 aagtatgactcgacttaccaattaataaatgcatgcaatgttctagactcatctagatgcatgtggtaccattaggattcaggagataatttta 101084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 515 - 603
Target Start/End: Complemental strand, 199631 - 199543
Alignment:
Q  515 acacccacgtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgac 603  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||||||| |||||  |||||||| |||| |||||||||||||||||||    
T  199631 acacccatgtaagattacacctcctcctacgtatttcacctatgtaaaggtacacctcattttacatttctcatatgactcaatatgac 199543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 420 - 503
Target Start/End: Complemental strand, 200882 - 200799
Alignment:
Q  420 cgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    |||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||||| ||| |||||  |||||||||||||    
T  200882 cgactcaccaattaacaagtgcatgcaatgttctagactcctctagatgcatgtggtactattggattcttgagataattttac 200799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 507 - 594
Target Start/End: Complemental strand, 34135865 - 34135778
Alignment:
Q  507 ttgaacccacacccacgtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgact 594  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  || ||||| |||  ||||||||||    
T  34135865 ttgaatccacacccaagtaagagtacacctcctcttacgtatttcacctatgtaaaagtacacctccttttacattcctcatatgact 34135778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 375 - 507
Target Start/End: Original strand, 18994703 - 18994835
Alignment:
Q  375 ttcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtg 474  Q
    ||||||||| ||| |||||||| |||||||||  |||||||| || |||||||||| | |||| ||  ||||||| ||||||||| | ||||||||||||    
T  18994703 ttcaccaatgcacgtatacaccaattcatataatcaagtatgacttgactcaccaaatcacaa-tgtatgcaatgctctagactcttctagatgcatgtg 18994801  T
Q  475 gtaccattagattcaggagat-aattttacagtt 507  Q
    |||||||  ||||| |||||| ||||||||||||    
T  18994802 gtaccatatgattccggagataaattttacagtt 18994835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 160 - 317
Target Start/End: Complemental strand, 24533587 - 24533431
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttagaa-acattccataattaaagtataatcaattgaaagtaaacgacata 258  Q
    |||||| |||| |||||||| ||| |||||| ||||||||||| |||||||||   || ||  | |||||||  |||||||| ||||| |||   |||||    
T  24533587 acccatccatacgaataaggtaggcggtcaaccaaacgaccactaggggttagtttacgttttacaattaaac-ataatcaaatgaaa-taattaacata 24533490  T
Q  259 atttaaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagca 317  Q
    |||||| ||||||||||||| ||||||| ||||||| ||| ||| ||||||||||||||    
T  24533489 atttaatttcacatgattaataaattcaacatcatcataagccaacaagtatacaagca 24533431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 420 - 480
Target Start/End: Original strand, 22576522 - 22576582
Alignment:
Q  420 cgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtacca 480  Q
    ||||||| ||| |||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  22576522 cgactcatcaaataacaagtgcatgcaatgttctagactcttttagatgcatgtggtacca 22576582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 603
Target Start/End: Original strand, 20271983 - 20272061
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgac 603  Q
    |||||||||||| |||||||||  ||  ||||||||||||||||||  || ||||| |||| |||||||||||||||||||    
T  20271983 gtaagagtacacatcctcttacaaat--cacctatgtaaaagtacacctccttttacatttctcatatgactcaatatgac 20272061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 6093442 - 6093527
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||  | |||| || ||||||||||||   | ||||| |||| ||||||||||||||||||| ||||||    
T  6093442 gtaagagtacacctcctcttac--aattcaactgtgtaaaagtacaaacccttttacatttctcatatgactcaatatgactatgatg 6093527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 418 - 477
Target Start/End: Complemental strand, 24533336 - 24533277
Alignment:
Q  418 ctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggta 477  Q
    ||||||||| ||||||  |||||  ||||||||||||||||||| |||||||||||||||    
T  24533336 ctcgactcatcaattattaaatggatgcaatgttctagactcatctagatgcatgtggta 24533277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 25132799 - 25132883
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||  |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  25132799 gtaagagtacacctcctcttacaaa---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgatg 25132883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 7513724 - 7513680
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  7513724 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 7513680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 22331165 - 22331209
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  22331165 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 22331209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 34898548 - 34898456
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttag-aaacattccataattaaagtataatcaattgaaagtaaa 251  Q
    |||||||||||||||||||||||    |||| |||||||||||  ||||||||   ||||  ||||||||||  |||||||| ||||||||||    
T  34898548 acccattcataagaataaggcagacaatcaatcaaacgaccactgggggttagttcacatctcataattaaaacataatcaactgaaagtaaa 34898456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 42180071 - 42180027
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  42180071 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 42180027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 45619742 - 45619698
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  45619742 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 45619698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 376 - 503
Target Start/End: Complemental strand, 26138 - 26011
Alignment:
Q  376 tcaccaatacacttatacaccgattcatatatccaagtatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtgg 475  Q
    |||||||| ||| |||||||||||||| |||  |||||| | ||||||||||||||  | |||||| ||| ||||||||||||| | |||||||||||||    
T  26138 tcaccaatgcacatatacaccgattcacataatcaagtaagactcgactcaccaatagataaatgcatgctatgttctagactcttctagatgcatgtgg 26039  T
Q  476 taccattagattcaggagataattttac 503  Q
    || |||  |||||  |||||||||||||    
T  26038 tatcataggattccagagataattttac 26011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 26249 - 26198
Alignment:
Q  266 ttcacatgattaacaaattcagcatcatcttaaaccatcaagtatacaagca 317  Q
    ||||||||||||| ||||||| ||||||| ||| ||| ||||||||||||||    
T  26249 ttcacatgattaataaattcaacatcatcataagccaacaagtatacaagca 26198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 35564881 - 35564983
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattcca--taattaaagtataatcaattgaaagtaaacgaca 256  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| | ||||| |   |||||||| |||||||||||||| |||||||||    
T  35564881 acccattcataagaataaggcaggtggtcaaccaaacaaccactaggggttagacatcattcaaaccaattaaagcataatcaattgaaaataaacgaca 35564980  T
Q  257 taa 259  Q
    |||    
T  35564981 taa 35564983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 35564710 - 35564846
Alignment:
Q  15 tcaaaacataagtaatatctcaatagtcaaataatagtctcaacataaagcaacgacaaatgtaagagtcgatcctaatcagagtccgacactactaaac 114  Q
    |||||||||||  |||||||||| ||||| |||||| ||||| ||||||||||||||||| |||||| |||||    |||       |||||||||||||    
T  35564710 tcaaaacataaa-aatatctcaacagtcagataataatctcatcataaagcaacgacaaaagtaagactcgat----atc-------gacactactaaac 35564797  T
Q  115 ttcaaagcagataaaggaggaagcttccgct-acctcaagcaactcacc 162  Q
    | ||||||||||||||| |||||||||||||  |||||| |||||||||    
T  35564798 tccaaagcagataaaggtggaagcttccgctgtcctcaaccaactcacc 35564846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 33395936 - 33396021
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||  | |||| |||||||||||||||  || ||||| |||| ||||||||||||||||||| ||||||    
T  33395936 gtaagagtacacctcctcttac--aattcaactatgtaaaagtacacctccttttacatttctcatatgactcaatatgactatgatg 33396021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 277
Target Start/End: Original strand, 30821610 - 30821727
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaattgaaagt-aaacgacat 257  Q
    |||||||||||||||||||| ||| |||||| |||||||||| | || ||||||  |||||||| ||| |||| |||||||| ||||||| |||||||||    
T  30821610 acccattcataagaataaggtaggcggtcaaccaaacgacca-ctggagttagattacattccacaataaaagcataatcaaatgaaagtaaaacgacat 30821708  T
Q  258 aatttaaattcacatgatta 277  Q
    || |||| ||||||||||||    
T  30821709 aa-ttaatttcacatgatta 30821727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 418 - 503
Target Start/End: Complemental strand, 21199299 - 21199214
Alignment:
Q  418 ctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataattttac 503  Q
    ||||||||||||| ||  |||||| ||||||||||||||||| | ||||||||||||||||| |   |||| ||||||||||||||    
T  21199299 ctcgactcaccaaatattaaatgcatgcaatgttctagactcgtctagatgcatgtggtaccctaccattctggagataattttac 21199214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 15807139 - 15807072
Alignment:
Q  174 ataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaa 240  Q
    |||||| |||||||||| ||||||||||| |||||||||| ||||||||| |||||||| ||||||||    
T  15807139 ataaggtaggtggtcaaccaaacgaccactaggggttagataacattccacaattaaagcataatcaa 15807072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 22613664 - 22613727
Alignment:
Q  215 acattccataattaaagtataatcaattgaaagtaaacgacataatttaaattcacatgattaa 278  Q
    ||||| |||||| |||  |||||||| ||||| ||||||||||||||||| |||| ||||||||    
T  22613664 acatttcataatcaaaacataatcaagtgaaaataaacgacataatttaatttcaaatgattaa 22613727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 593
Target Start/End: Original strand, 17022185 - 17022252
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgac 593  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  || ||||| |||| |||||||||    
T  17022185 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgac 17022252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 20252697 - 20252741
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  20252697 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 20252741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 33395839 - 33395883
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  33395839 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 33395883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1869 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 214 - 502
Target Start/End: Original strand, 575 - 862
Alignment:
Q  214 aacattccataattaaagtataatcaattgaaagtaaac-gacataatttaaattcacatgattaacaaattcagcatcatcttaaaccatcaagtatac 312  Q
    ||||||||| || |||| ||||||||| ||||||||||  |||||| ||||| |||| |||||||| ||| ||   |||||  |||| ||| ||||||      
T  575 aacattccacaaataaaatataatcaaatgaaagtaaaatgacata-tttaatttcaaatgattaataaactccaaatcattataaatcattaagtattg 673  T
Q  313 aagcattatcaagcactgcatataattcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacttatacaccgattcatatatccaag 412  Q
    || ||| |||||||| |||||| |||| || | |||| |||||  |||||| |||||||   |||||  || ||| || ||||| ||||| |||||||||    
T  674 aatcataatcaagcaatgcatacaattaacatatttcgagtatccacaacgttcaccaagt-ttcactcatgcacataaacaccaattcacatatccaag 772  T
Q  413 tatggctcgactcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccatta-gattcaggagataatttta 502  Q
    ||||   ||||||||||||| | || ||| |||||||||||| |||| | ||||||||| ||||| || || ||||| | |||||||||||    
T  773 tatgatacgactcaccaatt-ataagtgcatgcaatgttctaaactcttctagatgcatatggtagcaataggattccgaagataatttta 862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 198932 - 198848
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |    | |||||||||||||||| || |||||||||| ||||||||||| ||||||| ||||||    
T  198932 gtaagagtacacctcctcttacgcaa---aactatgtaaaagtacatctccttttatatttctcatatgactcgatatgacaatgatg 198848  T

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Target: scaffold0223 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 13769 - 13709
Alignment:
Q  101 cgacactactaaacttcaaagcagataaaggaggaagcttccgcta-cctcaagcaactca 160  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||||||||    
T  13769 cgacactactaaactccaaaacagataaaggaggaagcttccgctatcatcaagcaactca 13709  T

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Target: scaffold0417 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 1911 - 2032
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga-aacattccataattaaagtataatcaattgaaagtaa-acgacat 257  Q
    ||||||||||| ||||  |||||  |||||| ||||||||||||  | |||||| ||||||||| ||||||| ||||||||||||||||||| || ||||    
T  1911 acccattcatacgaatt-ggcagacggtcaaccaaacgaccaccgagagttagataacattccacaattaaattataatcaattgaaagtaatacaacat 2009  T
Q  258 aatttaaattcacatgattaacaa 281  Q
     |||||| |||| |||||||||||    
T  2010 -atttaagttcaaatgattaacaa 2032  T

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Target: scaffold1885 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1885
Description:

Target: scaffold1885; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 931 - 878
Alignment:
Q  160 acccattcataagaataaggcaggtggtcaaacaaacgaccaccaggggttaga 213  Q
    |||||||||||||||||||||||| |||||| ||||||| |||| |||||||||    
T  931 acccattcataagaataaggcaggcggtcaaccaaacgatcaccgggggttaga 878  T

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Target: scaffold0357 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 6351 - 6435
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  6351 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 6435  T

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Target: scaffold0317 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 603
Target Start/End: Complemental strand, 15472 - 15394
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgac 603  Q
    ||||||||||||||||||||||  | ||||||||||||||||||||   | ||||| |||| ||||||| |||||||||||    
T  15472 gtaagagtacacctcctcttac--aattcacctatgtaaaagtacacccccttttacatttctcatatggctcaatatgac 15394  T

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Target: scaffold0317; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 15553 - 15508
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacca 480  Q
    ||||||| ||||||||||||||||| | ||||||||||||||||||    
T  15553 caaatgcatgcaatgttctagactcttctagatgcatgtggtacca 15508  T

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Target: scaffold0174 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 603
Target Start/End: Complemental strand, 21663 - 21585
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgac 603  Q
    |||||||||||| |||||||||  || |||||||||||||| ||||  || ||||| |||| |||||||||||||||||||    
T  21663 gtaagagtacacatcctcttac--atctcacctatgtaaaattacacctccttttagatttctcatatgactcaatatgac 21585  T

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Target: scaffold0107 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 12056 - 12140
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  12056 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatg 12140  T

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Target: scaffold0508 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 502
Target Start/End: Original strand, 5836 - 5916
Alignment:
Q  422 actcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtaccattagattcaggagataatttta 502  Q
    |||||| || ||| |||||| ||||||||||||||| | | |||||||||||||||||||  ||||| |||||| ||||||    
T  5836 actcactaaataataaatgcatgcaatgttctagacccttctagatgcatgtggtaccataggattccggagatgatttta 5916  T

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Target: scaffold0186 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 424 - 480
Target Start/End: Original strand, 11521 - 11577
Alignment:
Q  424 tcaccaattaacaaatgcgtgcaatgttctagactcatttagatgcatgtggtacca 480  Q
    |||||||||| ||||||| |||||| |||||||||| | ||||||||||||||||||    
T  11521 tcaccaattatcaaatgcatgcaatattctagactcttctagatgcatgtggtacca 11577  T

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Target: scaffold0123 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 435 - 503
Target Start/End: Original strand, 33829 - 33900
Alignment:
Q  435 caaatgcgtgcaatgttctagactcattt--agatgcatgtggtaccatta-gattcaggagataattttac 503  Q
    ||||||| ||||||||||||||||| | |  |||||||||||||||||||| ||||| ||||||||||||||    
T  33829 caaatgcatgcaatgttctagactcttctctagatgcatgtggtaccattaggattccggagataattttac 33900  T

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Target: scaffold0017 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 11202 - 11287
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||| ||||||  | |||| |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  11202 gtaagagtacacctcttcttac--aattcaactatgtaaaagtacacatccttttacatttctcatatgactcgatatgactatgatg 11287  T

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Target: scaffold0253 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 9968 - 10052
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||  |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  9968 gtaagagtacacctcctcttaccca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 10052  T

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Target: scaffold0253; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 523 - 610
Target Start/End: Original strand, 19393 - 19477
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||  |   || |||||||||||||||  || ||||| |||| ||||||||||| ||||||| ||||||    
T  19393 gtaagagtacacctcctcttaccca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatg 19477  T

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Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 1649 - 1565
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  |  ||||| |||| ||||||||||| ||||||| ||||||    
T  1649 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctgcttttacatttctcatatgactcgatatgacaatgatg 1565  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 10937 - 10853
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||  | |||| |||||| ||||||||  || ||||| ||| | |||||||||||||||||| ||||||    
T  10937 gtaagagtacacctcctcttac--aattcaactatgttaaagtacacctccttttacattct-catatgactcaatatgactatgatg 10853  T

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Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 592
Target Start/End: Original strand, 29724 - 29790
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatga 592  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  |||||||| |||| ||||||||    
T  29724 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctcattttacatttctcatatga 29790  T

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Target: scaffold0387 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 523 - 603
Target Start/End: Complemental strand, 2518 - 2441
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgac 603  Q
    |||| |||||||||||||||||  |   || |||||||||||||||| || ||||| |||| ||||||||||| |||||||    
T  2518 gtaacagtacacctcctcttactca---caactatgtaaaagtacatctccttttaaatttctcatatgactcgatatgac 2441  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 481
Target Start/End: Complemental strand, 256083 - 256037
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtaccat 481  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||||    
T  256083 caaatgcatgcaatgttctagactcttctagatgcatgcggtaccat 256037  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 593
Target Start/End: Original strand, 68120 - 68187
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgac 593  Q
    ||||||||||||||||||||||| |   || |||||||||||||||  || ||||| |||| |||||||||    
T  68120 gtaagagtacacctcctcttacgca---caactatgtaaaagtacacctccttttacatttctcatatgac 68187  T

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Target: scaffold0175 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 6734 - 6650
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||||||| ||||  || ||||| ||||  |||||||||| ||||||| ||||||    
T  6734 gtaagagtacacctcctcttacgca---caactatgtaaaaatacacctccttttacatttcacatatgactcgatatgacaatgatg 6650  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 610
Target Start/End: Complemental strand, 106186 - 106102
Alignment:
Q  523 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacatttcattttatatttttcatatgactcaatatgaccatgatg 610  Q
    ||||||||||||||||||||||| |   || |||||| ||||||||  || ||||| ||||  |||||||||| ||||||| ||||||    
T  106186 gtaagagtacacctcctcttacgca---caactatgttaaagtacacctccttttacatttcacatatgactcgatatgacgatgatg 106102  T

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Target: scaffold0396 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 208 - 164
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  208 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 500
Target Start/End: Complemental strand, 3875 - 3796
Alignment:
Q  424 tcaccaattaacaaatgcgtgcaatgttctagactc--atttagatgcatgtggtaccatta-gattcaggagataattt 500  Q
    ||||||| || ||||||| |||||||||||||||||   | || ||||||||||||||| || ||||| |||||||||||    
T  3875 tcaccaaatatcaaatgcatgcaatgttctagactcttctctaaatgcatgtggtaccaataggattccggagataattt 3796  T

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Target: scaffold0138 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 26805 - 26849
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  26805 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 26849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 27820 - 27864
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  27820 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 27864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 39816 - 39860
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  39816 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 39860  T

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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 20218 - 20262
Alignment:
Q  435 caaatgcgtgcaatgttctagactcatttagatgcatgtggtacc 479  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  20218 caaatgcatgcaatgttctagactcttctagatgcatgcggtacc 20262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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