View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6022_low_23 (Length: 237)

Name: NF6022_low_23
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6022_low_23
NF6022_low_23
[»] chr5 (10 HSPs)
chr5 (1-224)||(41250853-41251066)
chr5 (122-224)||(18593572-18593675)
chr5 (122-223)||(7452918-7453020)
chr5 (122-187)||(29087808-29087873)
chr5 (122-224)||(7161662-7161765)
chr5 (122-216)||(5656749-5656844)
chr5 (122-223)||(34378429-34378531)
chr5 (122-185)||(698697-698760)
chr5 (131-224)||(18255098-18255192)
chr5 (134-223)||(18313303-18313393)
[»] chr7 (23 HSPs)
chr7 (122-224)||(31971783-31971886)
chr7 (122-223)||(47325534-47325636)
chr7 (122-224)||(5859931-5860034)
chr7 (122-223)||(10244510-10244612)
chr7 (122-224)||(42454382-42454485)
chr7 (122-223)||(25161138-25161240)
chr7 (122-223)||(44353213-44353315)
chr7 (122-187)||(38306590-38306655)
chr7 (126-223)||(6585220-6585318)
chr7 (122-223)||(33434480-33434582)
chr7 (122-221)||(37795326-37795426)
chr7 (122-221)||(37795654-37795754)
chr7 (122-223)||(3419048-3419148)
chr7 (130-222)||(3867453-3867545)
chr7 (122-186)||(41089431-41089494)
chr7 (122-218)||(43482235-43482331)
chr7 (126-223)||(34391516-34391614)
chr7 (150-223)||(35745481-35745555)
chr7 (122-187)||(3419344-3419407)
chr7 (123-223)||(48161690-48161790)
chr7 (164-223)||(40726140-40726200)
chr7 (127-221)||(11378772-11378866)
chr7 (122-176)||(40726202-40726256)
[»] chr1 (15 HSPs)
chr1 (122-224)||(31584688-31584790)
chr1 (122-223)||(30685573-30685675)
chr1 (122-223)||(7002517-7002619)
chr1 (126-216)||(46814121-46814212)
chr1 (122-223)||(40216155-40216257)
chr1 (127-223)||(14320658-14320755)
chr1 (122-224)||(24449579-24449681)
chr1 (122-223)||(6804868-6804969)
chr1 (129-217)||(27031496-27031585)
chr1 (122-224)||(24684141-24684243)
chr1 (122-187)||(5459490-5459555)
chr1 (122-187)||(5389109-5389174)
chr1 (126-175)||(24659264-24659313)
chr1 (122-224)||(41920787-41920890)
chr1 (122-173)||(46692519-46692570)
[»] chr3 (20 HSPs)
chr3 (122-223)||(2392152-2392254)
chr3 (122-223)||(2393915-2394017)
chr3 (122-223)||(45164183-45164285)
chr3 (122-224)||(31483210-31483313)
chr3 (123-224)||(34475406-34475508)
chr3 (123-223)||(21343678-21343779)
chr3 (128-224)||(50305222-50305319)
chr3 (126-217)||(40023224-40023316)
chr3 (122-224)||(47236028-47236131)
chr3 (122-223)||(19176836-19176938)
chr3 (126-223)||(23327997-23328095)
chr3 (122-187)||(30352125-30352190)
chr3 (122-187)||(43012707-43012772)
chr3 (122-216)||(17551287-17551382)
chr3 (129-223)||(25506719-25506814)
chr3 (126-184)||(45399119-45399177)
chr3 (122-186)||(9583740-9583804)
chr3 (126-217)||(50559978-50560070)
chr3 (122-223)||(53248230-53248332)
chr3 (127-223)||(4463734-4463831)
[»] chr4 (19 HSPs)
chr4 (122-224)||(4306035-4306137)
chr4 (122-224)||(30964767-30964870)
chr4 (122-224)||(35329337-35329440)
chr4 (123-223)||(7703018-7703118)
chr4 (122-223)||(27555579-27555682)
chr4 (122-207)||(20464919-20465005)
chr4 (126-218)||(31050315-31050408)
chr4 (127-223)||(46698428-46698525)
chr4 (127-219)||(49528421-49528514)
chr4 (129-224)||(2826118-2826214)
chr4 (126-185)||(52868800-52868859)
chr4 (122-223)||(8705789-8705891)
chr4 (122-223)||(36689454-36689556)
chr4 (122-222)||(11281375-11281476)
chr4 (129-217)||(35341006-35341097)
chr4 (141-223)||(9750116-9750198)
chr4 (158-223)||(30167212-30167278)
chr4 (122-185)||(8255357-8255420)
chr4 (122-185)||(8268775-8268838)
[»] scaffold0172 (1 HSPs)
scaffold0172 (129-222)||(19255-19349)
[»] chr8 (23 HSPs)
chr8 (122-223)||(12897925-12898027)
chr8 (122-223)||(31207011-31207113)
chr8 (129-220)||(35815896-35815988)
chr8 (122-223)||(22773951-22774053)
chr8 (122-219)||(16457128-16457226)
chr8 (122-223)||(20138756-20138858)
chr8 (122-223)||(32065934-32066035)
chr8 (126-224)||(15821025-15821123)
chr8 (122-223)||(9519836-9519938)
chr8 (122-219)||(37986508-37986606)
chr8 (122-186)||(41893093-41893156)
chr8 (126-223)||(3584071-3584170)
chr8 (122-223)||(24995044-24995146)
chr8 (122-223)||(36631153-36631254)
chr8 (122-187)||(27889176-27889241)
chr8 (122-187)||(27947834-27947899)
chr8 (122-222)||(35821585-35821685)
chr8 (163-224)||(9659473-9659535)
chr8 (126-187)||(10837923-10837984)
chr8 (122-169)||(34388711-34388758)
chr8 (131-224)||(13538324-13538418)
chr8 (131-224)||(13686056-13686150)
chr8 (137-182)||(38577477-38577522)
[»] chr2 (19 HSPs)
chr2 (125-223)||(39338510-39338609)
chr2 (126-223)||(14106172-14106269)
chr2 (130-223)||(14436916-14437010)
chr2 (129-224)||(43816095-43816191)
chr2 (129-224)||(5254590-5254685)
chr2 (122-223)||(387506-387608)
chr2 (122-223)||(10524428-10524529)
chr2 (129-217)||(43248882-43248971)
chr2 (127-224)||(3745676-3745774)
chr2 (126-223)||(7461010-7461107)
chr2 (123-185)||(14405530-14405591)
chr2 (125-217)||(41877207-41877300)
chr2 (126-223)||(7874610-7874709)
chr2 (126-207)||(17116553-17116635)
chr2 (128-216)||(13512495-13512584)
chr2 (127-224)||(45311452-45311550)
chr2 (156-224)||(25280963-25281032)
chr2 (147-222)||(15457817-15457893)
chr2 (141-216)||(7455601-7455676)
[»] chr6 (6 HSPs)
chr6 (122-223)||(3254287-3254389)
chr6 (122-224)||(10542161-10542263)
chr6 (122-223)||(15944329-15944431)
chr6 (122-219)||(3117824-3117922)
chr6 (127-181)||(33697789-33697843)
chr6 (140-224)||(15132488-15132573)
[»] scaffold0434 (1 HSPs)
scaffold0434 (122-187)||(2359-2424)
[»] scaffold0343 (1 HSPs)
scaffold0343 (122-217)||(6035-6131)
[»] scaffold0085 (1 HSPs)
scaffold0085 (122-223)||(48665-48767)


Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 41251066 - 41250853
Alignment:
Q  1 catgttccttcgtgtttgcataaatccatgcaaaccaaaagttaaggccataatcacaagagtctccaaaccaaaannnnnnnnnnnnnnnnnn-ataat 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||                   |||||    
T  41251066 catgttccttcgtgtttgcataaatccatgcaaaccaaaagataagaccataatcacaagagtctccaaaccaaaattttgatttttctttttttataat 41250967  T
Q  100 gaaaacaaataaattaataatatttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgttt-cgttcataccttgcttttgcgagga 198  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||            |||||||||||    
T  41250966 gaaaacaaataaattaataatatttacgtggttatggtgtaccgtctatatgcggcaccatttatatcttgtttgcg------------ttttgcgagga 41250879  T
Q  199 tgatgtttaataatatttgccgattc 224  Q
    ||||||||||||||||||||||||||    
T  41250878 tgatgtttaataatatttgccgattc 41250853  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 18593572 - 18593675
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||| | ||||| |||||| ||||||||||||||||||    
T  18593572 tttaggtggttatggtgtaccgtctatatgcggcaccatatttatcttgtttcgtccataccttgcatcttgcggggatgacgtttaataatatttgccg 18593671  T
Q  221 attc 224  Q
    ||||    
T  18593672 attc 18593675  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 7452918 - 7453020
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||| || || |||||||||| | ||||  |||||||||||||||||||||||||    
T  7452918 tttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgatttgtccataccttgcgtcttgcatggatgatgtttaataatatttgccg 7453017  T
Q  221 att 223  Q
    |||    
T  7453018 att 7453020  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 29087808 - 29087873
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc 187  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||    
T  29087808 tttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgc 29087873  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 7161765 - 7161662
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||| |||||||||||||||||||||| |||| |||| |||||| |||||| |||| ||||| | ||| | ||| || ||||||||||||||||||    
T  7161765 tttaggtgattatggtgtaccgtctatatgctacactatttgtatcttatttcgtccatatcttgcgtcttgtggggaagacgtttaataatatttgccg 7161666  T
Q  221 attc 224  Q
    ||||    
T  7161665 attc 7161662  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 5656844 - 5656749
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatattt 216  Q
    |||||||||||||  ||||||||||||||||| || ||||| |||||| ||||||||||||||||| | |||||  ||||  ||||||||||||||    
T  5656844 tttaggtggttatcatgtaccgtctatatgcggcatcatttgtatcttatttcgttcataccttgcgtcttgcggtgatggcgtttaataatattt 5656749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 34378429 - 34378531
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||| |||||||||||||||||||||||||| |||||||| ||||| || |||| ||| |||||| | |||||  ||||  ||||||||||||||| ||    
T  34378429 tttagatggttatggtgtaccgtctatatgcggcaccatttgtatctcgtctcgtccatgccttgcgtcttgcggagatggcgtttaataatatttgtcg 34378528  T
Q  221 att 223  Q
    |||    
T  34378529 att 34378531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 698697 - 698760
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcatacctt 185  Q
    ||||||||||||| |||||||||||||||||| |||||||| |||| | |||| | ||||||||    
T  698697 tttaggtggttatagtgtaccgtctatatgcggcaccatttgtatcatatttcatccatacctt 698760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 18255192 - 18255098
Alignment:
Q  131 ttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgattc 224  Q
    ||||| ||||||||||||||||| ||| |||| |||||||||||||  ||||| ||| | || || |||| | |||||| |||||||||||||||    
T  18255192 ttatgatgtaccgtctatatgcggcactatttgtatcttgtttcgtctataccctgcatcttacggggataacgtttaacaatatttgccgattc 18255098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 18313393 - 18313303
Alignment:
Q  134 tggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    |||||||||||||||||||| ||||||||  |||||||||| | |||||||||| | || |  | |||| |||||||||||||| ||||||    
T  18313393 tggtgtaccgtctatatgcggcaccatttgcatcttgtttcatccataccttgcgtcttacaggaatgacgtttaataatatttaccgatt 18313303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 31971886 - 31971783
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| | ||||| |||||  ||||||||||||||||||    
T  31971886 tttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccg 31971787  T
Q  221 attc 224  Q
    ||||    
T  31971786 attc 31971783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 47325636 - 47325534
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||  |||||||| ||||||||||||| |||||||||| | || ||||||||| ||||||||||||||||||    
T  47325636 tttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttacgaggatgacgtttaataatatttgccg 47325537  T
Q  221 att 223  Q
    |||    
T  47325536 att 47325534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 5860034 - 5859931
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| | ||| | ||||| |||||| ||||||||||||||||||    
T  5860034 tttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaataatatttgccg 5859935  T
Q  221 attc 224  Q
    ||||    
T  5859934 attc 5859931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 10244510 - 10244612
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||| | |||||  ||||  ||||||||||||||||||    
T  10244510 tttaggtggttatggtgtactgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggagatggagtttaataatatttgccg 10244609  T
Q  221 att 223  Q
    |||    
T  10244610 att 10244612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 42454485 - 42454382
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||  ||| ||||| | ||||| ||||||||||||||||||||||| |    
T  42454485 tttaggtggttatggtgtactgtctatatgcggcaccatttgtaccttgtttcgtctatatcttgcgtcttgcggggatgatgtttaataatatttgctg 42454386  T
Q  221 attc 224  Q
    ||||    
T  42454385 attc 42454382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 25161138 - 25161240
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcatacctt-gcttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||||||||||||| || ||||||||  |||||||||||||||||||||   | || || |||||| ||||||||||||||||||    
T  25161138 tttaggtggttatggtgtaccgtctatatacggcaccatttgcatcttgtttcgttcataccttaaatcttacggggatgacgtttaataatatttgccg 25161237  T
Q  221 att 223  Q
    |||    
T  25161238 att 25161240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 44353315 - 44353213
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| ||||| |||| | ||||| |||||  |||||||||||||| |||    
T  44353315 tttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatttaccg 44353216  T
Q  221 att 223  Q
    |||    
T  44353215 att 44353213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 38306590 - 38306655
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc 187  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||    
T  38306590 tttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgc 38306655  T

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Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 6585220 - 6585318
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    |||||||||||||||||||||||||| | |||||||| ||||||||||||| ||| |||||| | ||||| |||||  |||||||||||||||| ||||    
T  6585220 ggtggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccattccttgcatcttgcggggatggcgtttaataatatttgctgatt 6585318  T

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Target: chr7; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 33434582 - 33434480
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||||||||||||| |   ||||||| ||||||| ||||| |||||||||| | ||||| |||||  ||||||||||||||||||    
T  33434582 tttaggtggttatggtgtaccgtctatatacagaaccatttgtatcttgcttcgtccataccttgcgtattgcggggatggcgtttaataatatttgccg 33434483  T
Q  221 att 223  Q
    |||    
T  33434482 att 33434480  T

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Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 37795326 - 37795426
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||||||| ||   |||||||||||| ||||||||||||| |||||||||| | ||| | ||| || ||||||||||||||||||    
T  37795326 tttaggtggttatggtgtaccgtttaatcgcgacaccatttgtatcttgtttcgtccataccttgcgtcttgtggggacgacgtttaataatatttgccg 37795425  T
Q  221 a 221  Q
    |    
T  37795426 a 37795426  T

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Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 37795654 - 37795754
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||||||| ||   |||||||||||| ||||||||||||| |||||||||| | ||| | ||| || ||||||||||||||||||    
T  37795654 tttaggtggttatggtgtaccgtttaatcgcgacaccatttgtatcttgtttcgtccataccttgcgtcttgtggggacgacgtttaataatatttgccg 37795753  T
Q  221 a 221  Q
    |    
T  37795754 a 37795754  T

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Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 3419148 - 3419048
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||||||||  |||||| || | ||| ||||||||||||| |||||||||| | ||||| |||||| ||||||||||||||| ||    
T  3419148 tttaggtggttatggtgtaccgtc--tatgcggcaacgtttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgtcg 3419051  T
Q  221 att 223  Q
    |||    
T  3419050 att 3419048  T

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Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 3867453 - 3867545
Alignment:
Q  130 gttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgat 222  Q
    |||||||||||||||||||||| | |||||||| |||||||||||||  ||||||| | | ||||| |||||| ||||||||||||||||||||    
T  3867453 gttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtcaataccttacgtcttgcg-ggatgaagtttaataatatttgccgat 3867545  T

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Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 41089494 - 41089431
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttg 186  Q
    |||||||||||||||||||||||||||||||| ||||| || ||||||||||||| |||||||||    
T  41089494 tttaggtggttatggtgtaccgtctatatgcggcacca-ttgtatcttgtttcgtccataccttg 41089431  T

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Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 43482235 - 43482331
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgcttttgcgaggatgatgtttaataatatttgc 218  Q
    ||||||||||| ||||||||||||| |||||  ||| |||| |||||| |||||| |||||||||| | | || |||||| ||||||||||||||||    
T  43482235 tttaggtggttgtggtgtaccgtctgtatgcagcactatttgtatcttatttcgtccataccttgcgtctacggggatgacgtttaataatatttgc 43482331  T

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Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 34391516 - 34391614
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    ||||||||||||||| |||||||||||| ||  |||| ||||||||||||| |||||| ||| |  |||| |||||| |||||||||||||||| ||||    
T  34391516 ggtggttatggtgtatcgtctatatgcggcattatttgtatcttgtttcgtccataccctgcgtcctgcggggatgacgtttaataatatttgctgatt 34391614  T

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Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 35745555 - 35745481
Alignment:
Q  150 tgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    ||||||||||||| ||||||||||||| |||||||||| |||| ||  ||||| |||||||||||||||| ||||    
T  35745555 tgcgacaccatttgtatcttgtttcgtccataccttgcgttttacggagatgacgtttaataatatttgctgatt 35745481  T

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Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 3419407 - 3419344
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc 187  Q
    ||||||||||||||||||||||||  |||||| || | ||| ||||||||||||| ||||||||||    
T  3419407 tttaggtggttatggtgtaccgtc--tatgcggcaacgtttgtatcttgtttcgtccataccttgc 3419344  T

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Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 48161790 - 48161690
Alignment:
Q  123 ttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgctt-ttgcgaggatgatgtttaataatatttgccga 221  Q
    ||||||||||||||||| ||||||||||||| ||| |||| ||| ||||| ||| |||| ||||  | ||||  |||||| |||||||||||||||| ||    
T  48161790 ttaggtggttatggtgtgccgtctatatgcggcactatttgtattttgtt-cgtccatatcttgtgtcttgcagggatgacgtttaataatatttgctga 48161692  T
Q  222 tt 223  Q
    ||    
T  48161691 tt 48161690  T

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Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 40726200 - 40726140
Alignment:
Q  164 tatcttgtttcgttcataccttgctt-ttgcgaggatgatgtttaataatatttgccgatt 223  Q
    ||||||||||||| |||||||||| | ||||| ||||||  ||||||||||||||||||||    
T  40726200 tatcttgtttcgtccataccttgcgtcttgcggggatgacatttaataatatttgccgatt 40726140  T

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Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 11378866 - 11378772
Alignment:
Q  127 gtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccga 221  Q
    |||||||||||||||||| |||||||| || ||| | ||||||  ||||| |||||||||| | ||||| || ||  |||||||||||||||||||    
T  11378866 gtggttatggtgtaccgtttatatgcggcatcatctgtatctt-attcgtccataccttgcgtcttgcggggttggcgtttaataatatttgccga 11378772  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 40726256 - 40726202
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgt 176  Q
    ||||||||||||||||||||||||||||||   || ||||| ||| |||||||||    
T  40726256 tttaggtggttatggtgtaccgtctatatgtagcatcatttgtattttgtttcgt 40726202  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 31584790 - 31584688
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||    
T  31584790 tttaggtggttatggtgtatcgtctatatgcggcaccatttgtatcttgtttcg-tcataccttgcgtcttgcgaggatggtgtttaataatatttgccg 31584692  T
Q  221 attc 224  Q
    ||||    
T  31584691 attc 31584688  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 30685675 - 30685573
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||||| | ||||| |||||| ||||||||||||||||||    
T  30685675 tttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccg 30685576  T
Q  221 att 223  Q
    |||    
T  30685575 att 30685573  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 7002517 - 7002619
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||| |||||||||||||||||| |||||||| |||| ||| ||||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||    
T  7002517 tttaagtggttatggtgtaccgtttatatgcggcaccttttgtatcttgtttcgtccataccttacattttgcgaggatgacgtttaataatatttgccg 7002616  T
Q  221 att 223  Q
    |||    
T  7002617 att 7002619  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 46814212 - 46814121
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatattt 216  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| | | |||||||||||  ||||||||||||||    
T  46814212 ggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttacgtcttgcgaggatggcgtttaataatattt 46814121  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 40216257 - 40216155
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||| |||| || || | |||||||||||| |||||||||||||||| |    
T  40216257 tttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgattcgtccatatctggcgtcttgcgaggatgacgtttaataatatttgctg 40216158  T
Q  221 att 223  Q
    |||    
T  40216157 att 40216155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 14320658 - 14320755
Alignment:
Q  127 gtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    |||||||||||||||||||||||||||||||||||| ||| | |||| || |||||||||| | ||| | |||||| |||||||||||||||||||||    
T  14320658 gtggttatggtgtaccgtctatatgcgacaccatttgtatttggttttgtccataccttgcatcttgtggggatgacgtttaataatatttgccgatt 14320755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 24449681 - 24449579
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||| ||||||||||||||||||||||||||  |||||||| ||||||||||||| |||||||||| | ||||| |||||  |||||||||||||||||     
T  24449681 tttatgtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttgcatcttgcg-ggatggcgtttaataatatttgcca 24449583  T
Q  221 attc 224  Q
    ||||    
T  24449582 attc 24449579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 6804868 - 6804969
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |||||||||| | ||||| ||||   |||||||||||||| |||    
T  6804868 tttaggtggttatggtgtaccgtctatatgcggcaccatttgtatctt-tttcgtccataccttgcgtcttgcggggatagcgtttaataatatttaccg 6804966  T
Q  221 att 223  Q
    |||    
T  6804967 att 6804969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 27031585 - 27031496
Alignment:
Q  129 ggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttg 217  Q
    |||||||||||||||| |||||||| |||||||||||| ||||| ||| |||| ||||| | |||||||||||| |||||||||||||||    
T  27031585 ggttatggtgtaccgtatatatgcggcaccatttatatattgttccgtccatatcttgcgtcttgcgaggatgacgtttaataatatttg 27031496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 24684243 - 24684141
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||| ||||||||||||||||||||| | |||||||| |||||||||| ||||||||||||| | ||||  ||||||  | |||||||||||||||    
T  24684243 tttaggtgattatggtgtaccgtctatatgtggcaccatttgtatcttgttt-gttcataccttgcatcttgcagggatgacatataataatatttgccg 24684145  T
Q  221 attc 224  Q
    ||||    
T  24684144 attc 24684141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 5459490 - 5459555
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc 187  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||| ||||||||||    
T  5459490 tttaggtggttatggtgtaccgtctatatgcggcaccatttgtatgttgcttcgtccataccttgc 5459555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 5389174 - 5389109
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc 187  Q
    ||||||||||||| |||| ||||||||||||| |||||||| |||||| |||||| ||||||||||    
T  5389174 tttaggtggttatagtgtgccgtctatatgcggcaccatttgtatcttatttcgtccataccttgc 5389109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 24659264 - 24659313
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcg 175  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  24659264 ggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcg 24659313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 41920787 - 41920890
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||| ||||||||||||||||||  ||| |||| ||| || |||||| |||||||| | | |||||  ||||| ||||||||||||||| ||    
T  41920787 tttaggtggttacggtgtaccgtctatatgcagcacaatttgtattttatttcgtccataccttacgtcttgcggagatgacgtttaataatatttgtcg 41920886  T
Q  221 attc 224  Q
    ||||    
T  41920887 attc 41920890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 46692570 - 46692519
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgttt 173  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  46692570 tttaggtggttatggtgtaccgtctttatgcggcaccatttttatcttgttt 46692519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 2392254 - 2392152
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| | ||||| |||||| |||||||||||||| |||    
T  2392254 tttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatattttccg 2392155  T
Q  221 att 223  Q
    |||    
T  2392154 att 2392152  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 2394017 - 2393915
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| | ||||| |||||| |||||||||||||| |||    
T  2394017 tttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatattttccg 2393918  T
Q  221 att 223  Q
    |||    
T  2393917 att 2393915  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 45164183 - 45164285
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||| | ||||| |||| ||||||||||||||||||||    
T  45164183 tttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttagtccataccttgcatcttgcggggataatgtttaataatatttgccg 45164282  T
Q  221 att 223  Q
    |||    
T  45164283 att 45164285  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 31483210 - 31483313
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||||||| | ||| | ||||| |||||||||||||||||||    
T  31483210 tttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgttttgttcataccttgcgtcttgtggggatggtgtttaataatatttgccg 31483309  T
Q  221 attc 224  Q
    ||||    
T  31483310 attc 31483313  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 34475508 - 34475406
Alignment:
Q  123 ttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccga 221  Q
    ||||||||||||||| ||||||||||||| | |||||||| |||||||||||||||||||| ||| | ||||| |||||| |||||||||||| ||||||    
T  34475508 ttaggtggttatggtataccgtctatatggggcaccatttgtatcttgtttcgttcataccctgcgtcttgcggggatgacgtttaataatatgtgccga 34475409  T
Q  222 ttc 224  Q
    |||    
T  34475408 ttc 34475406  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 21343678 - 21343779
Alignment:
Q  123 ttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttg-cttttgcgaggatgatgtttaataatatttgccga 221  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||  | ||||  |||||| ||||||||||||||| |||    
T  21343678 ttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgtgtcttgccgggatgacgtttaataatatttgtcga 21343777  T
Q  222 tt 223  Q
    ||    
T  21343778 tt 21343779  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 50305319 - 50305222
Alignment:
Q  128 tggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgattc 224  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||| | ||||| | |||  |||||||||||||||| |||||    
T  50305319 tggttatggtgtaccgtctatatgcgacaccatttgtatcttgttccgtccataccttgcgtcttgcgggaatggcgtttaataatatttgctgattc 50305222  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 40023316 - 40023224
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttg 217  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||||| |||||  ||| | ||||| ||||||||||||||||||||||    
T  40023316 ggtggttatggtgtaccgtctatatgcggcatcatttgtatcttgtttcgtccatacaatgcgtcttgcggggatgatgtttaataatatttg 40023224  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 47236028 - 47236131
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||| |||||||||| | ||||  |||||  |||||||||||||||| |    
T  47236028 tttagatggttatggtataccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcagggatggcgtttaataatatttgctg 47236127  T
Q  221 attc 224  Q
    ||||    
T  47236128 attc 47236131  T

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Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 19176836 - 19176938
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||| |||||||||||||||||||||||| |||||||| |||| |||||||| ||||| |||| | ||||  | |||| ||||||||||||||||||    
T  19176836 tttaggtcgttatggtgtaccgtctatatgcggcaccatttgtatcatgtttcgtccatactttgcgtcttgcaggaatgacgtttaataatatttgccg 19176935  T
Q  221 att 223  Q
    |||    
T  19176936 att 19176938  T

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Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 23328095 - 23327997
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| | ||||  ||||   |||||||||||||||| ||||    
T  23328095 ggtggttatggtgtaccgtatatatgcggcaccatttatatcttgtttcgtccataccttgcgtattgcagggatagcgtttaataatatttgctgatt 23327997  T

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Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 30352190 - 30352125
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc 187  Q
    ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||    
T  30352190 tttaggtggttatggtgtaccttctatatgcggcaccatttgtatcttgtttcgtccataccttgc 30352125  T

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Target: chr3; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 43012707 - 43012772
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc 187  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||| ||||||||||||||||||||    
T  43012707 tttaggtggttatggtgtatcgtctatatgcggcaccatttgtatattgtttcgttcataccttgc 43012772  T

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Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 17551287 - 17551382
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatattt 216  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||| |||||||||||||||| ||| | ||||  |||| | ||||||||||||||    
T  17551287 tttaggtggttatggtgtacagtctatatgcggcaccatttgtattttgtttcgttcataccctgcatcttgcagggataacgtttaataatattt 17551382  T

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Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 25506814 - 25506719
Alignment:
Q  129 ggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcatacctt-gcttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    ||||||||||||||||||||||||| |||||||| ||| |||||| ||| ||| ||| | | ||||| |||||||||||||||||||||| |||||    
T  25506814 ggttatggtgtaccgtctatatgcggcaccatttgtatattgttttgtttatatcttgggtcttgcggggatgatgtttaataatatttgtcgatt 25506719  T

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Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 45399119 - 45399177
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcatacct 184  Q
    |||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  45399119 ggtggttatggtgtaccgtctatatgcggcaccgtttgtatcttgtttcgttcatacct 45399177  T

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Target: chr3; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 9583804 - 9583740
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttg 186  Q
    ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||  ||||||||    
T  9583804 tttaggtggttatggtgtatcgtctatatgcggcaccatttgtatcttgtttcgtctataccttg 9583740  T

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Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 50559978 - 50560070
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttg 217  Q
    ||||||||||||| ||||||||| |||| || | ||| ||||||||||||| |||| ||||| | |||||||||||| |||||||||||||||    
T  50559978 ggtggttatggtgcaccgtctatgtgcggcatcttttgtatcttgtttcgtccatatcttgcgtattgcgaggatgacgtttaataatatttg 50560070  T

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Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 53248230 - 53248332
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||| ||||||||||||||   |||||||||||||||||| |||||||||| || |||||||| |   ||||| |||||| ||||||||||||||| ||    
T  53248230 tttagatggttatggtgtacaacctatatgcgacaccatttgtatcttgttttgtccataccttacgccttgcggggatgacgtttaataatatttgtcg 53248329  T
Q  221 att 223  Q
    |||    
T  53248330 att 53248332  T

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Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 4463831 - 4463734
Alignment:
Q  127 gtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    |||||||||||| |||||||||||||| |||||||| | | ||||||||| |||  ||||| | ||| | || ||| |||||||||||||||||||||    
T  4463831 gtggttatggtgcaccgtctatatgcggcaccatttgtgtgttgtttcgtccatgtcttgcgtcttgtggggttgacgtttaataatatttgccgatt 4463734  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 4306035 - 4306137
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| | || || ||||||  |||||||||||||||||    
T  4306035 tttaggtggttatggtgtaccgtctatatgcggcaccatttatatctt-tttcgttcataccttgcgtcttccggggatgacatttaataatatttgccg 4306133  T
Q  221 attc 224  Q
    ||||    
T  4306134 attc 4306137  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 30964767 - 30964870
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| |||||||||| | ||||  ||||| |||||||||||||||| ||    
T  30964767 tttaggtggttatggtgtaccgtctatatgcaacatcatttgtatcttgtttcgtccataccttgcgtcttgcagggatggtgtttaataatatttgtcg 30964866  T
Q  221 attc 224  Q
    ||||    
T  30964867 attc 30964870  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 35329337 - 35329440
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||  |||||||| ||||||||||||| |||||||| | | ||||| |||||  ||||| ||||||||||||    
T  35329337 tttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttacgtcttgcggggatggcgtttactaatatttgccg 35329436  T
Q  221 attc 224  Q
    ||||    
T  35329437 attc 35329440  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 7703018 - 7703118
Alignment:
Q  123 ttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttg-cttttgcgaggatgatgtttaataatatttgccga 221  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||| |||| | |||||||||  | ||||| |||||| |||||||||||||||||||    
T  7703018 ttaggtggttatggtgtaccgtctatatgcggcaccatttgtatctt-tttcatccataccttgtgtcttgcggggatgacgtttaataatatttgccga 7703116  T
Q  222 tt 223  Q
    ||    
T  7703117 tt 7703118  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 27555682 - 27555579
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgc-gaggatgatgtttaataatatttgcc 219  Q
    ||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||| |||||||||| | |||| | |||||  |||||||||||||||||    
T  27555682 tttaggtggttatggtgtaccatctatatgcggcacaatttgtatcttgtttcgtccataccttgcgtcttgcgggggatggcgtttaataatatttgcc 27555583  T
Q  220 gatt 223  Q
    ||||    
T  27555582 gatt 27555579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 20464919 - 20465005
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgttta 207  Q
    ||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||| | ||| |||||||| |||||    
T  20464919 tttaggtggttatggtgtaccgtctatatacggcaccatttgtatcttgtttctttcataccttgcatcttgtgaggatgacgttta 20465005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 31050408 - 31050315
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgc 218  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| | || | ||||| ||| || ||||||||||||||||    
T  31050408 ggtggttatggtgtaccgtctatatgcgacatcatttgtatcttgtttcgtccatacatcgcatcttgcggggacgacgtttaataatatttgc 31050315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 46698525 - 46698428
Alignment:
Q  127 gtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||  |||||||||| | || |  |||||| |||||||||||||||| ||||    
T  46698525 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgaccataccttgcgtctttcatggatgacgtttaataatatttgctgatt 46698428  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 49528421 - 49528514
Alignment:
Q  127 gtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcatacctt-gcttttgcgaggatgatgtttaataatatttgcc 219  Q
    |||||| |||||||||||||||||||| |||||||| ||||||||||||| ||||||||   ||||||| || || |||||||| |||||||||    
T  49528421 gtggttttggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgttttgcggggttggtgtttaatgatatttgcc 49528514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 2826118 - 2826214
Alignment:
Q  129 ggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgattc 224  Q
    |||||||||||||||| |||||||| |||||||| ||||||||| ||| |||||||||| | ||||   ||||| |||||||||||||||| |||||    
T  2826118 ggttatggtgtaccgtatatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgcagagatgacgtttaataatatttgctgattc 2826214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 52868859 - 52868800
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcatacctt 185  Q
    |||||||||||||||||||||||| |||||||||||| ||||||  ||||||||||||||    
T  52868859 ggtggttatggtgtaccgtctatacgcgacaccatttgtatcttaattcgttcatacctt 52868800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 8705891 - 8705789
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||  |||||||| |||| ||  |||| ||||||| || | |||   |||||| ||||||||||||||||||    
T  8705891 tttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcctgcctcgtccatacctcgcgtcttgaagggatgacgtttaataatatttgccg 8705792  T
Q  221 att 223  Q
    |||    
T  8705791 att 8705789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 36689556 - 36689454
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||| |||||||| ||||||||||||||||||| ||||||| |||||| |||||| ||||||| || | |||||  |||| | |||||||||||||| ||    
T  36689556 tttaagtggttatagtgtaccgtctatatgcgataccatttgtatcttatttcgtccatacctcgcgtcttgcggagatggtatttaataatatttgtcg 36689457  T
Q  221 att 223  Q
    |||    
T  36689456 att 36689454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 11281476 - 11281375
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||| |||||||||||| |  ||||||||||||| |||||||| |||| ||||| | ||| |  ||||| ||| ||||||||||||||    
T  11281476 tttaggtggttatggtataccgtctatatacagcaccatttatatcatgtttcgtccatatcttgcgtcttgtggagatgacgttcaataatatttgccg 11281377  T
Q  221 at 222  Q
    ||    
T  11281376 at 11281375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 35341097 - 35341006
Alignment:
Q  129 ggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgc--gaggatgatgtttaataatatttg 217  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||| ||||| |||| | ||||  | |||||| |||||||||||||||    
T  35341097 ggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccatacattgcgtcttgcggggggatgacgtttaataatatttg 35341006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 9750116 - 9750198
Alignment:
Q  141 ccgtctatatgcgacaccatttatatcttgtttcgttcataccttgcttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    ||||||||||||| |||||||| ||||||||||||| || ||||   | ||||| |||||| ||||||||||||||| |||||    
T  9750116 ccgtctatatgcggcaccatttgtatcttgtttcgtccaaacctgcgtcttgcggggatgacgtttaataatatttgtcgatt 9750198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 30167278 - 30167212
Alignment:
Q  158 catttatatcttgtttcgttcataccttgctt-ttgcgaggatgatgtttaataatatttgccgatt 223  Q
    ||||| ||||||||||||| |||||||||| | |||||||||||| ||||||||||||||| |||||    
T  30167278 catttgtatcttgtttcgtccataccttgcgtcttgcgaggatgacgtttaataatatttgtcgatt 30167212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 8255357 - 8255420
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcatacctt 185  Q
    |||||||||||||| ||||||||||||||||| || ||||| |||||||| |||| || |||||    
T  8255357 tttaggtggttatgatgtaccgtctatatgcggcatcatttgtatcttgtctcgtccacacctt 8255420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 8268775 - 8268838
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcatacctt 185  Q
    |||||||||||||| ||||||||||||||||| || ||||| |||||||| |||| || |||||    
T  8268775 tttaggtggttatgatgtaccgtctatatgcggcatcatttgtatcttgtctcgtccacacctt 8268838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 19255 - 19349
Alignment:
Q  129 ggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgat 222  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||| | |||||||||||| ||||||||||||||||||||    
T  19255 ggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccatgcgtcttgcgaggatgacgtttaataatatttgccgat 19349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 12898027 - 12897925
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||| | ||||| |||||| ||||||||||||||||||    
T  12898027 tttaggtggtaatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatatcttgcatcttgcggggatgacgtttaataatatttgccg 12897928  T
Q  221 att 223  Q
    |||    
T  12897927 att 12897925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 31207113 - 31207011
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||||||| ||||| || |||||||| ||||||||||||| |||||||||| | |||||||||||  ||||||||||||||||||    
T  31207113 tttaggtggttatggtgtaccgtttatatacggcaccatttgtatcttgtttcgtccataccttgcgtcttgcgaggatggcgtttaataatatttgccg 31207014  T
Q  221 att 223  Q
    |||    
T  31207013 att 31207011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 35815988 - 35815896
Alignment:
Q  129 ggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||||| |||||||||||||  ||||||||||||||||||    
T  35815988 ggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccataccttgcgttttgcgaggatggcgtttaataatatttgccg 35815896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 22773951 - 22774053
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||| | ||||| |||||  ||||||||||||||||||    
T  22773951 tttagatggttatggtgtaccgtctatatgcggcaccatttgtatctagtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccg 22774050  T
Q  221 att 223  Q
    |||    
T  22774051 att 22774053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 16457226 - 16457128
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgcc 219  Q
    |||||||||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||| | | ||||  |||||| |||||||||||||||||    
T  16457226 tttaggtggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccataccttacgtcttgcagggatgacgtttaataatatttgcc 16457128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 20138756 - 20138858
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| ||||| |||| | ||||| |||||  |||||||||||||| |||    
T  20138756 tttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatttaccg 20138855  T
Q  221 att 223  Q
    |||    
T  20138856 att 20138858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 32066035 - 32065934
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||| | |||||  ||||  ||||||||||||||||||    
T  32066035 tttaggtggttatg-tgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcatcttgcggtgatggcgtttaataatatttgccg 32065937  T
Q  221 att 223  Q
    |||    
T  32065936 att 32065934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 15821123 - 15821025
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgattc 224  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||||| ||| |||||||||| | |||| ||||||| |||||||||||||||| |||||    
T  15821123 ggtggttatggtataccgtctatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgc-aggatgacgtttaataatatttgctgattc 15821025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 9519836 - 9519938
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||||||||| | |||   ||||| |||||||||||||||| ||    
T  9519836 tttaggtggttatgatgtactgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgtagggatggtgtttaataatatttgtcg 9519935  T
Q  221 att 223  Q
    |||    
T  9519936 att 9519938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 219
Target Start/End: Complemental strand, 37986606 - 37986508
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgcc 219  Q
    |||||||||||||||||||||||||||||||  |||||||| ||||||||||||| | | |||||| | ||||| ||||||  ||||||||||||||||    
T  37986606 tttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccgtgccttgcgtcttgcggggatgacatttaataatatttgcc 37986508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 41893156 - 41893093
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttg 186  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||    
T  41893156 tttaggtggttatggtgtaccgtctatatgcgacaccatttgtat-ttttttcgttcataccttg 41893093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 3584071 - 3584170
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatc-ttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    |||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||| || | ||| | |||||  |||||||||||||||| ||||    
T  3584071 ggtggttatggtgtaccgtctatatgcggcaccatttgtatctttgtttcgttcatacctcgcgtcttgtggggatggcgtttaataatatttgctgatt 3584170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 24995146 - 24995044
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||| |||||||||| | || || |||||  ||| |||||||||||| |    
T  24995146 tttaggtggttatggtgtactgtctataagcggcaccatttgtatcttgtttcgtccataccttgcgtcttacggggatggcgttcaataatatttgctg 24995047  T
Q  221 att 223  Q
    |||    
T  24995046 att 24995044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 36631153 - 36631254
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| | ||||  |||||  || ||||||||||| |||    
T  36631153 tttaggtgattatggtgtaccgtctatatgcggcaccatttgtatcttgtttc-ttcataccttgcgtcttgcagggatggcgtataataatattttccg 36631251  T
Q  221 att 223  Q
    |||    
T  36631252 att 36631254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 27889176 - 27889241
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc 187  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||  |||||||||    
T  27889176 tttaggtggttatggtgtacagtctatatgcggcaccatttgtatcttgtttcgtcaataccttgc 27889241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 27947834 - 27947899
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc 187  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||||||||||||  |||||||||    
T  27947834 tttaggtggttatggtgtacagtctatatgcggcaccatttgtatcttgtttcgtcaataccttgc 27947899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 35821585 - 35821685
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||| ||||||||||||||||||||||||||| || ||||| |||| |||||||| ||| |||||| | |||||  ||||  ||||||||||||||||||    
T  35821585 tttaagtggttatggtgtaccgtctatatgcggcatcatttgtatcatgtttcgtccat-ccttgcgtcttgcggagatggcgtttaataatatttgccg 35821683  T
Q  221 at 222  Q
    ||    
T  35821684 at 35821685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 9659473 - 9659535
Alignment:
Q  163 atatcttgtttcgttcataccttgctt-ttgcgaggatgatgtttaataatatttgccgattc 224  Q
    |||||||||||||| |||||||||| | ||||| |||||| ||||||||||||||||||||||    
T  9659473 atatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgattc 9659535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 10837984 - 10837923
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc 187  Q
    |||||||||||||||||||||||||||| ||| ||||  ||||| ||| |||||| ||||||    
T  10837984 ggtggttatggtgtaccgtctatatgcggcacgatttgcatcttattttgttcattccttgc 10837923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 34388758 - 34388711
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatctt 169  Q
    |||||||||||||||||||||||||||||||  ||| |||| ||||||    
T  34388758 tttaggtggttatggtgtaccgtctatatgcagcactatttgtatctt 34388711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 13538324 - 13538418
Alignment:
Q  131 ttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgattc 224  Q
    ||||| |||||||||||||||||  ||||||| ||| || |||||| |||||||||| | ||| |  ||||  |||||||||||||||| |||||    
T  13538324 ttatgatgtaccgtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgattc 13538418  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 13686150 - 13686056
Alignment:
Q  131 ttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgattc 224  Q
    ||||| |||||||||||||||||  ||||||| ||| || |||||| |||||||||| | ||| |  ||||  |||||||||||||||| |||||    
T  13686150 ttatgatgtaccgtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgattc 13686056  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 38577522 - 38577477
Alignment:
Q  137 tgtaccgtctatatgcgacaccatttatatcttgtttcgttcatac 182  Q
    ||||||||||||||||| || ||||| ||| |||||||||||||||    
T  38577522 tgtaccgtctatatgcggcatcatttgtatattgtttcgttcatac 38577477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 39338609 - 39338510
Alignment:
Q  125 aggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||| | || ||| ||||  |||||||||||||||||||||    
T  39338609 aggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacattgcgtcttacgatgatggcgtttaataatatttgccgatt 39338510  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 14106269 - 14106172
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| ||| | |||||||||||  |||||||||||||||| ||||    
T  14106269 ggtggttatggtgtaccgtctatatgcggcaccatttctatcttgtttcg-tcataccctgcgtcttgcgaggatggcgtttaataatatttgctgatt 14106172  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 14437010 - 14436916
Alignment:
Q  130 gttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| | ||||| |||||  |||||||||||||||| ||||    
T  14437010 gttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgctgatt 14436916  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 43816191 - 43816095
Alignment:
Q  129 ggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgattc 224  Q
    ||||||||||||||||||||||||| || ||||| ||  ||||||||| |||||||||| ||||||| | |||| ||||||||||||||||||||||    
T  43816191 ggttatggtgtaccgtctatatgcggcatcatttgtactttgtttcgtccataccttgcgttttgcgggaatgacgtttaataatatttgccgattc 43816095  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 5254590 - 5254685
Alignment:
Q  129 ggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgattc 224  Q
    ||||||||||||||||||||||||| |||||||| |||| | |||||| |||||||| | | |||||||||||| |||||||||||||||| |||||    
T  5254590 ggttatggtgtaccgtctatatgcggcaccatttgtatc-tatttcgtccataccttacgtcttgcgaggatgacgtttaataatatttgctgattc 5254685  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 387506 - 387608
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |||   |||||  ||||| |||||||||||| || ||    
T  387506 tttaagtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccctgcgacttgcggtgatgacgtttaataatatctgtcg 387605  T
Q  221 att 223  Q
    |||    
T  387606 att 387608  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 10524428 - 10524529
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||||| |||||||||  |||||||| ||| ||||||||| |||||||||| | |||| ||| ||  ||||||||||||||||||    
T  10524428 tttaggtggttatggtgtaccatctatatgctgcaccatttgtatattgtttcgtccataccttgcgtcttgc-agggtggcgtttaataatatttgccg 10524526  T
Q  221 att 223  Q
    |||    
T  10524527 att 10524529  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 43248971 - 43248882
Alignment:
Q  129 ggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttg-cttttgcgaggatgatgtttaataatatttg 217  Q
    ||||||| | ||||||||||||||| | |||||||||||||||||||| |||||||||  | ||| |||||||| |||||||||||||||    
T  43248971 ggttatgatataccgtctatatgcggcgccatttatatcttgtttcgtccataccttgtgtcttgtgaggatgacgtttaataatatttg 43248882  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 3745676 - 3745774
Alignment:
Q  127 gtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgattc 224  Q
    ||||||||| |||||| |||||||||  |||||||| ||||||||||||| |||||||||| | ||  | ||||||  |||||||||||||||||||||    
T  3745676 gtggttatgatgtaccatctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttatggggatgacatttaataatatttgccgattc 3745774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 7461010 - 7461107
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgatt 223  Q
    |||||||||||||||| |||||||||| ||||||||| ||| |||||||| ||||||  ||| | ||||| |||||| |||||||||||||||| ||||    
T  7461010 ggtggttatggtgtactgtctatatgcaacaccatttgtattttgtttcg-tcatactctgcgtcttgcggggatgacgtttaataatatttgctgatt 7461107  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 14405530 - 14405591
Alignment:
Q  123 ttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcatacctt 185  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||||||||||    
T  14405530 ttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttg-ttcgttcatacctt 14405591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 41877300 - 41877207
Alignment:
Q  125 aggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttg 217  Q
    |||||||||||||||||||||||||| ||  ||||||| ||| ||||||||| |||| ||||| | ||||| |||||  |||||||||||||||    
T  41877300 aggtggttatggtgtaccgtctatatacggtaccatttgtatattgtttcgtccatatcttgcgtcttgcggggatggagtttaataatatttg 41877207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 7874610 - 7874709
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttg-cttttgcgaggatgatg-tttaataatatttgccgatt 223  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||| ||  ||||||||  | |||||||||||  | ||||||||||||||| ||||    
T  7874610 ggtggttatggtgtaccgtctatatgcggcgccatttgtatcttgttttgtctataccttgtgtcttgcgaggatggcgttttaataatatttgctgatt 7874709  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 17116635 - 17116553
Alignment:
Q  126 ggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgttta 207  Q
    ||||||||| |||||||||||||||||| || ||||| |||||||| |||| |||||||||| | ||||| |||||| |||||    
T  17116635 ggtggttatagtgtaccgtctatatgcggcatcatttgtatcttgtctcgtccataccttgcgtcttgcggggatgacgttta 17116553  T

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Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 13512584 - 13512495
Alignment:
Q  128 tggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatattt 216  Q
    |||||||| ||||||||||||||||| || ||||| ||| ||||||||| ||||| |||| | ||||| | |||| ||||||||||||||    
T  13512584 tggttatgttgtaccgtctatatgcggcatcatttgtattttgtttcgtccatacattgcgtcttgcgggaatgacgtttaataatattt 13512495  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 45311550 - 45311452
Alignment:
Q  127 gtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgattc 224  Q
    ||||||||||||| |||| |||||| | |||||||| ||||||||||||| | | |||||| | ||||| || ||  ||||||||||||| ||||||||    
T  45311550 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgattc 45311452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 25281032 - 25280963
Alignment:
Q  156 accatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgattc 224  Q
    ||||||||||||||||||||| |||||| ||| | ||| | |||||| |||||||||||||| |||||||    
T  25281032 accatttatatcttgtttcgtccataccctgcgtcttgtggggatgacgtttaataatattttccgattc 25280963  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 15457817 - 15457893
Alignment:
Q  147 atatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgat 222  Q
    ||||||| |||||||| ||||||||||||| |||| | ||| | ||||| |||||| |||||||| |||||||||||    
T  15457817 atatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaatattatttgccgat 15457893  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 7455601 - 7455676
Alignment:
Q  141 ccgtctatatgcgacaccatttatatcttgtttcgttcataccttgcttttgcgaggatgatgtttaataatattt 216  Q
    |||||||| |||| |||||||| |||||| ||||||||||||||   | ||||| |||||| |||||||| |||||    
T  7455601 ccgtctatttgcggcaccatttgtatcttatttcgttcatacctgcgtcttgcggggatgacgtttaatattattt 7455676  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 3254287 - 3254389
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||| ||||||||||  ||||||| || |||||||| ||||||||||||| |||||||||| | ||||| |||||| ||||||||||||||||||    
T  3254287 tttaggtggctatggtgtactatctatatacggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccg 3254386  T
Q  221 att 223  Q
    |||    
T  3254387 att 3254389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 10542161 - 10542263
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    ||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||| ||||| | ||||| |||||  | |||||||||||| |||    
T  10542161 tttaggtggttatggtgtatcgtctatatgcggcaccttttgtatcttgtttcgttcatatcttgcatcttgcg-ggatggcgcttaataatattttccg 10542259  T
Q  221 attc 224  Q
    ||||    
T  10542260 attc 10542263  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 15944329 - 15944431
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||  || |||||||||| | || |  |||||  ||||||||||||||||||    
T  15944329 tttaggtgtttatggtgtaccgtctatatgcgacaccatttgtatcttcttctgtccataccttgcgtcttacagggatggcgtttaataatatttgccg 15944428  T
Q  221 att 223  Q
    |||    
T  15944429 att 15944431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 3117824 - 3117922
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgcc 219  Q
    ||||||||||||||||||| |||||||||||  |||||||| |||||| |||||| |||||||| | | ||||  | |||| |||||||||||||||||    
T  3117824 tttaggtggttatggtgtagcgtctatatgctgcaccatttgtatcttatttcgtccataccttacgtcttgcaggaatgacgtttaataatatttgcc 3117922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 33697843 - 33697789
Alignment:
Q  127 gtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcata 181  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  33697843 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccata 33697789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 15132573 - 15132488
Alignment:
Q  140 accgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttgccgattc 224  Q
    ||||||||||| || || ||||| |||||||||| || |||||||| | | |||||| ||||  |||||||||||||||| |||||    
T  15132573 accgtctatatacggcatcatttgtatcttgttttgtccataccttacgtcttgcgatgatggcgtttaataatatttgctgattc 15132488  T

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Target: scaffold0434 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 2424 - 2359
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc 187  Q
    |||||||||||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||    
T  2424 tttaggtggttatggtgtaccgtctatatgcggcaccatctgtatcttgtttcgtccataccttgc 2359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 6035 - 6131
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttgc-ttttgcgaggatgatgtttaataatatttg 217  Q
    |||||||||||||| |||| ||||||||| || |||||||| |||||||| ||||||||| ||||| | ||||| |||||| |||||||||||||||    
T  6035 tttaggtggttatgatgtaacgtctatatacggcaccatttgtatcttgtctcgttcatatcttgcgtcttgcggggatgacgtttaataatatttg 6131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 48665 - 48767
Alignment:
Q  122 tttaggtggttatggtgtaccgtctatatgcgacaccatttatatcttgtttcgttcataccttg-cttttgcgaggatgatgtttaataatatttgccg 220  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||| || |||| ||||  | ||||| ||| || ||| |||||||||||| |    
T  48665 tttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttagtccatatcttgtgtcttgcggggaggacgttgaataatatttgcgg 48764  T
Q  221 att 223  Q
    |||    
T  48765 att 48767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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