View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6022_low_26 (Length: 204)
Name: NF6022_low_26
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 11196064 - 11196243
Alignment:
| Q |
7 |
catcatcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttgtccctagt |
106 |
Q |
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| T |
11196064 |
catcgtcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttgtccctagt |
11196163 |
T |
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| Q |
107 |
tattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattt |
186 |
Q |
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| T |
11196164 |
tattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattt |
11196243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 11155617 - 11155796
Alignment:
| Q |
7 |
catcatcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttgtccctagt |
106 |
Q |
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| T |
11155617 |
catcatcatcgatttggaagctgattttaatctgaggaacacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagt |
11155716 |
T |
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| Q |
107 |
tattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattt |
186 |
Q |
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| T |
11155717 |
tattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattt |
11155796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 11160566 - 11160658
Alignment:
| Q |
94 |
tgttgtccctagttattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattt |
186 |
Q |
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| T |
11160566 |
tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattt |
11160658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 11199147 - 11199239
Alignment:
| Q |
94 |
tgttgtccctagttattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattt |
186 |
Q |
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| T |
11199147 |
tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattt |
11199239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 33 - 184
Target Start/End: Original strand, 11132361 - 11132512
Alignment:
| Q |
33 |
atgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacat |
132 |
Q |
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| T |
11132361 |
atgatttgaggtatacctgccggagctgggggaatttccaaaacaaattttcctagcaagttgttccccatagttatttttctttcaccctcgtaaacat |
11132460 |
T |
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| Q |
133 |
caattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccat |
184 |
Q |
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| T |
11132461 |
gaatcaaaatattggtttggttatgaagatgtgttgtgaatacttgttccat |
11132512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 11169949 - 11170021
Alignment:
| Q |
60 |
ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacat |
132 |
Q |
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| T |
11169949 |
ggaggaatttcaaactcaaaagctcctagcaagttgttgtccttagttatttgcctctcaccctcataaacat |
11170021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 11275333 - 11275402
Alignment:
| Q |
60 |
ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaa |
129 |
Q |
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| T |
11275333 |
ggaggaatttcaaacctaaaagttcctagcaagttgttgtccttagttgttttcctctcaccctcataaa |
11275402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 11208771 - 11208841
Alignment:
| Q |
60 |
ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaac |
130 |
Q |
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| T |
11208771 |
ggaggaatttcaaactcaaaagatcctagcaagttgttgtccttagttgtttgcctctcaccctcataaac |
11208841 |
T |
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