View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6022_low_3 (Length: 583)

Name: NF6022_low_3
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6022_low_3
NF6022_low_3
[»] chr3 (3 HSPs)
chr3 (110-564)||(49613116-49613570)
chr3 (193-292)||(49618179-49618278)
chr3 (454-521)||(49618436-49618503)
[»] chr6 (18 HSPs)
chr6 (301-540)||(2964374-2964613)
chr6 (262-521)||(2658984-2659243)
chr6 (1-103)||(31492293-31492395)
chr6 (1-103)||(31497682-31497784)
chr6 (1-103)||(31503068-31503171)
chr6 (317-539)||(2997363-2997585)
chr6 (409-540)||(2951912-2952043)
chr6 (437-540)||(2934600-2934703)
chr6 (409-540)||(3003752-3003883)
chr6 (409-540)||(2927130-2927261)
chr6 (458-540)||(2982885-2982967)
chr6 (193-250)||(2964272-2964329)
chr6 (479-540)||(2937503-2937564)
chr6 (461-521)||(2974032-2974092)
chr6 (184-238)||(2997646-2997700)
chr6 (184-249)||(3004019-3004084)
chr6 (184-252)||(2659238-2659306)
chr6 (148-248)||(2951681-2951781)
[»] chr7 (1 HSPs)
chr7 (200-299)||(20012374-20012473)
[»] scaffold0024 (1 HSPs)
scaffold0024 (414-540)||(35216-35342)


Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 110 - 564
Target Start/End: Original strand, 49613116 - 49613570
Alignment:
Q  110 ttcactgcatagattctgctatacctaattttcgtagctgttattctgaaaccctagactttactcaacaggagcttgttcaattaatcttaatcgattc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49613116 ttcactgcatagattctgctatacctaattttcgtagctgttattctgaaaccctagactttactcaacaggagcttgttcaattaatcttaatcgattc 49613215  T
Q  210 tggtttcataattgagcttttctggagatcctattatgatgattggtctcaagatgatgggtttctcttaaaaccttggttagcttctaacataagatta 309  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49613216 tggtttcataattgagcttttctggagatcctattatgacgattggtctcaagatgatgggtttctcttaaaaccttggttagcttctaacataagatta 49613315  T
Q  310 gatttgttgttacttgaaaatcaattgccattttttgttattcaagaaatttacaatctttcatttacttctacaaatgctagtgttcccaagactaaaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  49613316 gatttgttgttacttgaaaatcaattgccattttttgttattcaagaaatttacaatctttcatttacttctactaacgctagtgttcccaagactaaaa 49613415  T
Q  410 tcccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactga 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49613416 tcccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggcgattttagtataaggcacttcactga 49613515  T
Q  510 tctgattaggattttccacctgcaacatcctttgcaaagacggccgcttagaatt 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49613516 tctgattaggattttccacctgcaacatcctttgcaaagacggccgcttagaatt 49613570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 193 - 292
Target Start/End: Original strand, 49618179 - 49618278
Alignment:
Q  193 ttaatcttaatcgattctggtttcataattgagcttttctggagatcctattatgatgattggtctcaagatgatgggtttctcttaaaaccttggttag 292  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||||||| |||| |||||||  ||||| ||||||||||||||||||||| |||||    
T  49618179 ttaatcttaattgattccgggttcataattgagcttttctggagatcctattgtgatcattggtcctaagataatgggtttctcttaaaacctttgttag 49618278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 454 - 521
Target Start/End: Original strand, 49618436 - 49618503
Alignment:
Q  454 aatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactgatctgattaggat 521  Q
    ||| ||||||| |||| ||||||| | |||||| ||||||||||||||||||||||||||||||||||    
T  49618436 aataaatcaaaattggattttgatgacggtgatattagtataaggcacttcactgatctgattaggat 49618503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 301 - 540
Target Start/End: Original strand, 2964374 - 2964613
Alignment:
Q  301 ataagattagatttgttgttacttgaaaatcaattgccattttttgttattcaagaaatttacaatctttcatttacttctacaaatgctagtgttccca 400  Q
    ||||||| ||||||  ||||||||||||||||  | || | ||| |||||| || ||||||||| ||||||||| | ||||||||||||||||||||| |    
T  2964374 ataagatcagatttaatgttacttgaaaatcagcttccctatttcgttattgaaaaaatttacagtctttcattgagttctacaaatgctagtgttccta 2964473  T
Q  401 agactaaaatcccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggca 500  Q
    | ||||| ||||||||||||||| |||| | |  |||||||||||  ||||||||| ||||||| |||| ||||||||| |||||| |||||||||||||    
T  2964474 acactaacatcccttcttttcttaaactcactactgattattttgattattacaataaatcaaaattggattttgataagggtgatattagtataaggca 2964573  T
Q  501 cttcactgatctgattaggattttccacctgcaacatcct 540  Q
    ||||||||||||||||||||| || ||  |||||||||||    
T  2964574 cttcactgatctgattaggatatttcatttgcaacatcct 2964613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 262 - 521
Target Start/End: Complemental strand, 2659243 - 2658984
Alignment:
Q  262 gatgatgggtttctcttaaaaccttggttagcttctaacataagattagatttgttgttacttgaaaatcaattgccattttttgttattcaagaaattt 361  Q
    |||||||||||||| || ||||||||||||| |  |   |||  ||||||||| |||||||||||||||||  | || ||||| |||||| |||||||||    
T  2659243 gatgatgggtttctatttaaaccttggttagatgatggtatagcattagatttattgttacttgaaaatcagcttccctttttcgttattgaagaaattt 2659144  T
Q  362 acaatctttcatttacttctacaaatgctagtgttcccaagactaaaatcccttcttttcttgaacttagttttgattattttgcatattacaatcaatc 461  Q
    |||| |||||||  | ||||||||||||||||||||| |||||||  ||||||  |||||||||||| | | || | ||||||   | || |||| ||||    
T  2659143 acaaactttcatcgagttctacaaatgctagtgttcctaagactacgatccctggttttcttgaactcactattaaatatttttattcttccaataaatc 2659044  T
Q  462 aaacttgggttttgataatggtgattttagtataaggcacttcactgatctgattaggat 521  Q
    |||||||  |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  2659043 aaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggat 2658984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31492293 - 31492395
Alignment:
Q  1 tcaaatctctttaatattttgttcaagaacatggcttactgtggatacccacaggcttatccacatgcatatccaccggatccaccaacttattcacagg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  31492293 tcaaatctctttgatattttgttcaagaacatggcttactgtggatacccagaggcttatccacatgcatatccaccgaatccaccaacttattcacagg 31492392  T
Q  101 ttc 103  Q
    |||    
T  31492393 ttc 31492395  T

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Target: chr6; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31497682 - 31497784
Alignment:
Q  1 tcaaatctctttaatattttgttcaagaacatggcttactgtggatacccacaggcttatccacatgcatatccaccggatccaccaacttattcacagg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  31497682 tcaaatctctttgatattttgttcaagaacatggcttactgtggatacccagaggcttatccacatgcatatccaccgaatccaccaacttattcacagg 31497781  T
Q  101 ttc 103  Q
    |||    
T  31497782 ttc 31497784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 31503068 - 31503171
Alignment:
Q  1 tcaaatctctttaatattttgttcaa-gaacatggcttactgtggatacccacaggcttatccacatgcatatccaccggatccaccaacttattcacag 99  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31503068 tcaaatctctttgatattttgttcaaagaacatggcttactgtggatacccagaggcttatccacatgcatatccaccgaatccaccaacttattcacag 31503167  T
Q  100 gttc 103  Q
    ||||    
T  31503168 gttc 31503171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 317 - 539
Target Start/End: Complemental strand, 2997585 - 2997363
Alignment:
Q  317 tgttacttgaaaatcaattgccattttttgttattcaagaaatttacaatctttcatttacttctacaaatgctagtgttcccaagactaaaatcccttc 416  Q
    ||||||||||||||||| | || ||||| |||||| || ||||||||| ||||||||| | ||||||||||||||||  ||| || ||||  |||||||     
T  2997585 tgttacttgaaaatcaacttccctttttcgttattgaaaaaatttacagtctttcattcagttctacaaatgctagtaatcctaacactatgatcccttg 2997486  T
Q  417 ttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactgatctgatt 516  Q
    |||||||||||| | | || ||| |||    | || |||| |||||||||||  ||||||| |||||||| |||||||||||||||||||||||||||||    
T  2997485 ttttcttgaactcactattaattttttcttttctttcaataaatcaaacttgttttttgatgatggtgatattagtataaggcacttcactgatctgatt 2997386  T
Q  517 aggattttccacctgcaacatcc 539  Q
    ||||| || ||  ||||||||||    
T  2997385 aggatatttcatttgcaacatcc 2997363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 409 - 540
Target Start/End: Original strand, 2951912 - 2952043
Alignment:
Q  409 atcccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactg 508  Q
    |||| |||||||||| |||| | | || |||||||||  ||||||||| ||||||| |||| ||||||||| |||||| |||||||||||||||||||||    
T  2951912 atccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattggattttgataagggtgatattagtataaggcacttcactg 2952011  T
Q  509 atctgattaggattttccacctgcaacatcct 540  Q
    ||||||||||||| || ||  |||||||||||    
T  2952012 atctgattaggatatttcatttgcaacatcct 2952043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 437 - 540
Target Start/End: Original strand, 2934600 - 2934703
Alignment:
Q  437 attattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactgatctgattaggattttccacctgcaaca 536  Q
    |||||||||  ||||||||| ||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| || ||  |||||||    
T  2934600 attattttggttattacaataaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggatatttcatttgcaaca 2934699  T
Q  537 tcct 540  Q
    ||||    
T  2934700 tcct 2934703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 409 - 540
Target Start/End: Complemental strand, 3003883 - 3003752
Alignment:
Q  409 atcccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactg 508  Q
    |||| |||||||||| |||| | | || |||||||||  ||||||||| ||||||| |||| ||||||||| |||||| |||||||||| ||||||||||    
T  3003883 atccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattggattttgataagggtgatattagtataagtcacttcactg 3003784  T
Q  509 atctgattaggattttccacctgcaacatcct 540  Q
    ||||||||||||| || ||  |||||||||||    
T  3003783 atctgattaggatatttcatttgcaacatcct 3003752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 409 - 540
Target Start/End: Original strand, 2927130 - 2927261
Alignment:
Q  409 atcccttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactg 508  Q
    |||| |||||||||| |||| | | || |||||||||  ||||||||| ||||||| |||  ||||||||| |||||| ||| |||||||||||||||||    
T  2927130 atccattcttttcttaaactcactattcattattttggttattacaataaatcaaaattgaattttgataagggtgatattattataaggcacttcactg 2927229  T
Q  509 atctgattaggattttccacctgcaacatcct 540  Q
    |||||||| |||| || ||  |||||||||||    
T  2927230 atctgattcggatatttcatttgcaacatcct 2927261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 458 - 540
Target Start/End: Original strand, 2982885 - 2982967
Alignment:
Q  458 aatcaaacttgggttttgataatggtgattttagtataaggcacttcactgatctgattaggattttccacctgcaacatcct 540  Q
    ||||||| |||  |||||||||||||||| |||||||||||||||||||||||||||||||||| || ||  |||||||||||    
T  2982885 aatcaaaattgtcttttgataatggtgatattagtataaggcacttcactgatctgattaggatatttcatttgcaacatcct 2982967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 2964272 - 2964329
Alignment:
Q  193 ttaatcttaatcgattctggtttcataattgagcttttctggagatcctattatgatg 250  Q
    ||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||    
T  2964272 ttaatcttaatcgattctggttttataattgaacttttttgcagatcctattatgatg 2964329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 540
Target Start/End: Original strand, 2937503 - 2937564
Alignment:
Q  479 atggtgattttagtataaggcacttcactgatctgattaggattttccacctgcaacatcct 540  Q
    |||||||| |||||||||| ||||||||||||||||||||||| || ||  |||||||||||    
T  2937503 atggtgatattagtataagtcacttcactgatctgattaggatatttcatttgcaacatcct 2937564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 521
Target Start/End: Original strand, 2974032 - 2974092
Alignment:
Q  461 caaacttgggttttgataatggtgattttagtataaggcacttcactgatctgattaggat 521  Q
    |||| ||||||||||||||   |||| ||||||||| |||||||| |||||||||||||||    
T  2974032 caaaattgggttttgataacaatgatattagtataatgcacttcaatgatctgattaggat 2974092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 2997700 - 2997646
Alignment:
Q  184 cttgttcaattaatcttaatcgattctggtttcataattgagcttttctggagat 238  Q
    |||||| | ||||||||||||||||| ||||| |||||||| ||||||| |||||    
T  2997700 cttgttaagttaatcttaatcgattccggttttataattgaacttttcttgagat 2997646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 3004084 - 3004019
Alignment:
Q  184 cttgttcaattaatcttaatcgattctggtttcataattgagcttttctggagatcctattatgat 249  Q
    |||||| | ||||||||||||||||| | ||| |||||| | ||||| ||||||| ||||||||||    
T  3004084 cttgttaagttaatcttaatcgattccgcttttataattcaacttttttggagatactattatgat 3004019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 2659306 - 2659238
Alignment:
Q  184 cttgttcaattaatcttaatcgattctggtttcataattgagcttttctggagatcctattatgatgat 252  Q
    |||||| | |||||||||||||||||  |||| |||||| | ||||| |||| || |||||||||||||    
T  2659306 cttgttaagttaatcttaatcgattcctgttttataattcaacttttttggacatactattatgatgat 2659238  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 2951681 - 2951781
Alignment:
Q  148 tgttattctgaaaccctagactttactcaacaggagcttgttcaattaatcttaatcgattctggtttcataattgagcttttctggagatcctattatg 247  Q
    ||||||||||||||||||   ||| ||||  | || |||||| | ||||||||||||||||| | ||| |||||| | ||||| |||| ||||| |||||    
T  2951681 tgttattctgaaaccctaccattttctcatgatgaacttgttaagttaatcttaatcgattccgcttttataattcaacttttttggacatcctgttatg 2951780  T
Q  248 a 248  Q
    |    
T  2951781 a 2951781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 20012374 - 20012473
Alignment:
Q  200 taatcgattctggtttcataattgagcttttctggagatcctattatgatgattggtctcaagatgatgggtttctcttaaaaccttggttagcttctaa 299  Q
    |||| ||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||| || |||||||| ||  ||||||||| | |||||| |||||    
T  20012374 taattgattctggttttatatttgagtttttctggagattctattatgatgattggtctgaaaatgatggggtttccttaaaaccattgttagcatctaa 20012473  T

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Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 414 - 540
Target Start/End: Complemental strand, 35342 - 35216
Alignment:
Q  414 ttcttttcttgaacttagttttgattattttgcatattacaatcaatcaaacttgggttttgataatggtgattttagtataaggcacttcactgatctg 513  Q
    ||||||||||||||| | | || ||||||||  ||||| |||||||||||| |||| ||||||||||  |  |    | |||||||||||||||||||||    
T  35342 ttcttttcttgaactcactattaattattttcaatatttcaatcaatcaaaattggtttttgataataatagtcagtgcataaggcacttcactgatctg 35243  T
Q  514 attaggattttccacctgcaacatcct 540  Q
    |||||||| || ||  |||||||||||    
T  35242 attaggatatttcatttgcaacatcct 35216  T

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