View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6022_low_4 (Length: 559)

Name: NF6022_low_4
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6022_low_4
NF6022_low_4
[»] chr1 (10 HSPs)
chr1 (11-488)||(51221726-51222203)
chr1 (181-334)||(51382145-51382298)
chr1 (185-333)||(51857801-51857949)
chr1 (167-334)||(51781990-51782157)
chr1 (162-312)||(51828969-51829120)
chr1 (227-334)||(51763681-51763786)
chr1 (185-333)||(51831604-51831752)
chr1 (235-282)||(25869453-25869500)
chr1 (192-275)||(45693600-45693683)
chr1 (235-271)||(23896904-23896940)
[»] chr6 (2 HSPs)
chr6 (181-289)||(4183711-4183819)
chr6 (181-282)||(4744550-4744650)
[»] chr5 (1 HSPs)
chr5 (192-298)||(1428466-1428569)


Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 488
Target Start/End: Original strand, 51221726 - 51222203
Alignment:
Q  11 cacagaggatgccatcacaagtggaaacctcgagatcatagtctcgacgccaagtaaatggaggagattggacagttgtggaggcagaggtgaaaataga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||||||||||    
T  51221726 cacagaggatgccatcacaagtggaaacctcgagatcatagtctcgacgacaagtaaatggaggagattggttagttgtggatgcagaggtgaaaataga 51221825  T
Q  111 ggagattgagaaatcaaattgaagtaactcacttgaggagttcatacagcttatattgaggtgttggaaatcgtggttgaaggttgacaagcgaagttgc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51221826 ggagattgagaaatcaaattgaagtaactcacttgaggagttcgtacagcttatattgaggtgttggaaatcgtggttgaaggttgacaagcgaagttgc 51221925  T
Q  211 ttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatgaggtgtttcatgggcagccggcacaggattt 310  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51221926 ttcttggcaaaatttaaatcatgagagataagagaattccatgacttgcagatgcagcggagttgaatgaggtgtttcacgggcagccggcacaggattt 51222025  T
Q  311 cttcaacgagatggaacggaagagaaggagggtgaagtgaattggtgggagtttcggaggaggaagagagtgatgtcaatagctgcaagttcatgtcggt 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51222026 cttcaacgagatggaacggaagagaaggagggtgaagtgaattggtgggagtttcggaggaggaagagagtgatatcaatagctgcaagttcatgtcggt 51222125  T
Q  411 tgttaagatttctctgtgggtgactgatgttagttaggattctagttaacctgatggaggctagggttcacactaacc 488  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51222126 tgttaggatttttctgtgggtgactgatgttagttaggattctagttaacctgatggaggctagggttcacactaacc 51222203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 181 - 334
Target Start/End: Original strand, 51382145 - 51382298
Alignment:
Q  181 tcgtggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatga 280  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||| ||| |||||||||| ||    
T  51382145 tcgtggttggaggttgacaaacgaagttgcttcttggcgaaattggaatcatgagagataagataattccatgacttgcagacgcaacggagttgaagga 51382244  T
Q  281 ggtgtttcatgggcagccggcacaggatttcttcaacgagatggaacggaagag 334  Q
    ||||||||| ||| ||| |||||||||||||| | || |||| |||||||||||    
T  51382245 ggtgtttcacggggagcaggcacaggatttctgccaccagatcgaacggaagag 51382298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 185 - 333
Target Start/End: Complemental strand, 51857949 - 51857801
Alignment:
Q  185 ggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatgaggtg 284  Q
    ||||| |||||||||||||||| |||||| | |  || | | ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| |     
T  51857949 ggttggaggttgacaagcgaaggtgcttcatagtgaattcggaatcatgagagataagagaattccatgacttgcagatgcaacggagttgaaggagatt 51857850  T
Q  285 tttcatgggcagccggcacaggatttcttcaacgagatggaacggaaga 333  Q
    ||||| ||| ||| ||||||| ||||||   ||||||| ||||| ||||    
T  51857849 tttcacggggagctggcacagaatttctgtcacgagatcgaacgaaaga 51857801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 334
Target Start/End: Complemental strand, 51782157 - 51781990
Alignment:
Q  167 tgaggtgttggaaatcgtggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgca 266  Q
    ||||||| |||  |||||||||  |||||||||||||||  || || || || || ||  ||||| | ||||||||||||||||||||||| ||||  |     
T  51782157 tgaggtggtggcgatcgtggttagaggttgacaagcgaaagtgttttttagcgaatttagaatcatgggagataagagaattccatgacttacagacacg 51782058  T
Q  267 gcggagttgaatgaggtgtttcatgggcagccggcacaggatttcttcaacgagatggaacggaagag 334  Q
    |||||||| |||||| ||||||| ||| ||| | |||||||||||| |||| |||| |||||||||||    
T  51782057 gcggagtttaatgagatgtttcacggggagcagacacaggatttctgcaaccagatcgaacggaagag 51781990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 312
Target Start/End: Complemental strand, 51829120 - 51828969
Alignment:
Q  162 tatattgaggtgttggaaatcgtggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgactt-gca 260  Q
    |||||||||||| |||   | ||||| | ||||||| ||| |||| || ||| ||||||||||| ||||   || ||||||||||||||||||||| |||    
T  51829120 tatattgaggtggtggcggttgtggtcgtaggttgagaagtgaaggtgtttcctggcaaaattggaatcctcagggataagagaattccatgactttgca 51829021  T
Q  261 gatgcagcggagttgaatgaggtgtttcatgggcagccggcacaggatttct 312  Q
    ||  || |||||||||||||||||||||| ||| ||| ||||||| ||||||    
T  51829020 gacacaacggagttgaatgaggtgtttcacggggagcaggcacagtatttct 51828969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 227 - 334
Target Start/End: Original strand, 51763681 - 51763786
Alignment:
Q  227 aatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatgaggtgtttcatgggcagccggcacaggatttcttcaacgagatggaa 326  Q
    ||||| || ||||||||||||||||||||||||||| ||| | |||||||| ||| ||||||| ||  ||||||||||| ||||||   |||||||  ||    
T  51763681 aatcatgacagataagagaattccatgacttgcagacgcaacagagttgaaggagatgtttcacgg--agccggcacagaatttctgtcacgagatcaaa 51763778  T
Q  327 cggaagag 334  Q
    ||||||||    
T  51763779 cggaagag 51763786  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 185 - 333
Target Start/End: Complemental strand, 51831752 - 51831604
Alignment:
Q  185 ggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatgaggtg 284  Q
    ||||| ||||||||||  |||| |||||| |||  |||||| ||||   |||||||||||| ||||||||||||||||  || |||||||||| |||       
T  51831752 ggttggaggttgacaactgaaggtgcttcctggtgaaattggaatcttcagagataagagagttccatgacttgcagacacaacggagttgaaggagaaa 51831653  T
Q  285 tttcatgggcagccggcacaggatttcttcaacgagatggaacggaaga 333  Q
    |||||  || ||||||||||||||| || | |||||||  |||||||||    
T  51831652 tttcactgggagccggcacaggattactaccacgagatcaaacggaaga 51831604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 25869453 - 25869500
Alignment:
Q  235 gagataagagaattccatgacttgcagatgcagcggagttgaatgagg 282  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||||    
T  25869453 gagattagagaattccatgacttgcaaatgcagcggagttgcatgagg 25869500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 45693600 - 45693683
Alignment:
Q  192 ggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttg 275  Q
    |||||||| |||||| || ||||| ||||| |||  |||||  ||||| ||||||||||| |||||||| ||||||||||||||    
T  45693600 ggttgacatgcgaaggtgattcttagcaaatttgggatcaattgagattagagaattccacgacttgcatatgcagcggagttg 45693683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 23896904 - 23896940
Alignment:
Q  235 gagataagagaattccatgacttgcagatgcagcgga 271  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  23896904 gagattagagaattccatgacttgcagacgcagcgga 23896940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 4183711 - 4183819
Alignment:
Q  181 tcgtggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatga 280  Q
    ||||||||| |||| ||||| ||||| || |||||||| || ||| ||||| | ||||||||||||||||| |||||||| | ||| |||||||||| ||    
T  4183711 tcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaagga 4183810  T
Q  281 ggtgtttca 289  Q
    |||||||||    
T  4183811 ggtgtttca 4183819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 181 - 282
Target Start/End: Original strand, 4744550 - 4744650
Alignment:
Q  181 tcgtggttgaaggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatga 280  Q
    ||||||||| |||| ||||| ||||| || |||||||| || ||| ||||| | |||||||||||||| || |||||||| | ||| |||||||||| ||    
T  4744550 tcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaatt-caggacttgcaaacgcaacggagttgaagga 4744648  T
Q  281 gg 282  Q
    ||    
T  4744649 gg 4744650  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 1428466 - 1428569
Alignment:
Q  192 ggttgacaagcgaagttgcttcttggcaaaattgaaatcaagagagataagagaattccatgacttgcagatgcagcggagttgaatgaggtgtttcatg 291  Q
    |||||||| || ||||||||||||||| || |||| |||   || ||| |||||||| |||| |||||| | ||| |||||||||| |||| |||||| |    
T  1428466 ggttgacatgctaagttgcttcttggcgaatttgagatc---agtgattagagaattacatgccttgcaaaggcatcggagttgaaggaggagtttcacg 1428562  T
Q  292 ggcagcc 298  Q
    || ||||    
T  1428563 ggtagcc 1428569  T

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