View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6022_low_5 (Length: 539)
Name: NF6022_low_5
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Complemental strand, 37078291 - 37077778
Alignment:
| Q |
17 |
gtgtgcttgtataaatctctcataatccattcgatacaaatggtcaccagcaagaactaagtattccaaaacattgtgctcctcgaaaagccataaatat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37078291 |
gtgtgcttgtataaatctctcataatccattcgatacaaatggtcaccagcaagaactaagtattccaaaacattgtgctcctcgaaaagccataaatat |
37078192 |
T |
|
| Q |
117 |
tgcctcaccgcatctgcagttccctgtaatagtgaaagcattcaaaatcataagatagttctagactaccataagtgatcatagcaataaacagtaacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37078191 |
tgcctcaccgcatctgcagttccctgtaatagtgaaagcattcaaaatcataagatagttctagactaccataagtgatcatagcaataaacagtaacaa |
37078092 |
T |
|
| Q |
217 |
cagaaaacataaataaggttgcttattacctggaaccagtttggattctcaggactctgctgtgcagcaagaacctcaacgaaaccttcatttttgtaac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37078091 |
tagaaaacataaataaggttgcttattacctggaaccagtttggattctcaggactctgctgtgcagcaagaacctcaacgaaaccttcatttttgtaac |
37077992 |
T |
|
| Q |
317 |
cacccatgttgctcgcatatgcacgggacaagtgcctattcaaggatgctgaattgaattgtgtgaggacgtagatctttgatatgttactgtttaggca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37077991 |
cacccatgttgctcgcatatgcacgggacaagtgcctattcaaggatgctgaattgaattgtgtgaggacgtagatctttgatatgttactgtttaggca |
37077892 |
T |
|
| Q |
417 |
gttgctgacagggatatcaatcagcctatagtttgctccaagaggaacagctggttttgcccgcttcttggtcaatggataaagacgcgtcccggcaccc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37077891 |
gttgctgacagggatatcaatcagcctatagtttgctccaagaggaacagctggttttgcccgcttcttggtcaatggataaagacgcgtcccggcaccc |
37077792 |
T |
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| Q |
517 |
cctccaagtataat |
530 |
Q |
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|||||||||||||| |
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| T |
37077791 |
cctccaagtataat |
37077778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 243 - 530
Target Start/End: Complemental strand, 42464000 - 42463713
Alignment:
| Q |
243 |
tacctggaaccagtttggattctcaggactctgctgtgcagcaagaacctcaacgaaaccttcatttttgtaaccacccatgttgctcgcatatgcacgg |
342 |
Q |
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|||||||||||| || |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| | |||||| ||||| ||||| |
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| T |
42464000 |
tacctggaaccaattaggattctcaggactttgctgagcagcaagaacctcaacaaaaccttcatttttgtagccaccgaggttgcttgcataagcacga |
42463901 |
T |
|
| Q |
343 |
gacaagtgcctattcaaggatgctgaattgaattgtgtgaggacgtagatctttgatatgttactgtttaggcagttgctgacagggatatcaatcagcc |
442 |
Q |
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|| | || | ||| | ||| || ||||||||||| || || || |||||||| |||||||| ||||||| ||||||||| ||||| |||||||| || | |
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| T |
42463900 |
gaaagatgtcgattgagggacgcagaattgaattgagtaagaacatagatcttagatatgttgctgtttaagcagttgctaacaggtatatcaatgagtc |
42463801 |
T |
|
| Q |
443 |
tatagtttgctccaagaggaacagctggttttgcccgcttcttggtcaatggataaagacgcgtcccggcaccccctccaagtataat |
530 |
Q |
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||||||| |||||||||||||||||||||||||| | ||||||||| | |||||| ||||| || || ||||| |||||||||||||| |
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| T |
42463800 |
tatagttagctccaagaggaacagctggttttgctctcttcttggtgagtggatatagacgagtaccagcaccacctccaagtataat |
42463713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 42464511 - 42464386
Alignment:
| Q |
17 |
gtgtgcttgtataaatctctcataatccattcgatacaaatggtcaccagcaagaactaagtattccaaaacattgtgctcctcgaaaagccataaatat |
116 |
Q |
| |
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||||||||| |||||| |||| |||||||||||||||||||||||||| || |||| |||||| ||||||||||| ||||| || ||||||||||||||| |
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| T |
42464511 |
gtgtgcttggataaatttctcgtaatccattcgatacaaatggtcaccggccagaattaagtactccaaaacattatgctcttcaaaaagccataaatat |
42464412 |
T |
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| Q |
117 |
tgcctcaccgcatctgcagttccctg |
142 |
Q |
| |
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|||||||| ||||||||||| ||||| |
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| T |
42464411 |
tgcctcacagcatctgcagtaccctg |
42464386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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