View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6022_low_6 (Length: 478)
Name: NF6022_low_6
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_low_6 |
 | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 63 - 468
Target Start/End: Original strand, 1964879 - 1965284
Alignment:
| Q |
63 |
tgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaa |
162 |
Q |
| |
|
||||| |||||| ||| |||||||| ||||||| |||||||| ||| ||||||||||||||||||| ||||| ||||||||||| |||||||| || ||| |
|
|
| T |
1964879 |
tgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcgggagtggtggtacactttcacacgaa |
1964978 |
T |
|
| Q |
163 |
caaattaatgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatcttt |
262 |
Q |
| |
|
|||||| | |||||||| |||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1964979 |
caaattgttcagctggctctggggttagaattgagtaatcagaaattcctatgggttgtgtgagcaccaagtagtagttcatctagtgcagcatatcttt |
1965078 |
T |
|
| Q |
263 |
cagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagat |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1965079 |
cagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagat |
1965178 |
T |
|
| Q |
363 |
tcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatgg |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1965179 |
tcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcacatgg |
1965278 |
T |
|
| Q |
463 |
cctatg |
468 |
Q |
| |
|
|||||| |
|
|
| T |
1965279 |
cctatg |
1965284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 60 - 468
Target Start/End: Complemental strand, 2011818 - 2011410
Alignment:
| Q |
60 |
tgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaa |
159 |
Q |
| |
|
|||||||| |||||| ||| |||||||| ||||||| |||||||| ||| ||||||||||||||||||| ||||| || |||||||| |||||||| || |
|
|
| T |
2011818 |
tgatgatgctaatggtttggagtgtctgtcatggttagacaaacaacaatcttgttcagttttgtatgtgtctttcggtagtggtggtacactttcacac |
2011719 |
T |
|
| Q |
160 |
gaacaaattaatgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatc |
259 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2011718 |
gaacaaattgttgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctaatgcagcatatc |
2011619 |
T |
|
| Q |
260 |
tttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctca |
359 |
Q |
| |
|
|||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2011618 |
tttcagcacaaaatgatgttgatgctttacaatttttaccatctgggtttttggagagaaccaaagaggaaggttttgtcattacatcatgggcacctca |
2011519 |
T |
|
| Q |
360 |
gattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgca |
459 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||| || |
|
|
| T |
2011518 |
gattcaaatccttagtcatagttcagttggcgggttcttgagtcactgtggttggagctcaacacttgaaagtgtggttcatggggtgccactaatcaca |
2011419 |
T |
|
| Q |
460 |
tggcctatg |
468 |
Q |
| |
|
||||||||| |
|
|
| T |
2011418 |
tggcctatg |
2011410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 2018659 - 2018201
Alignment:
| Q |
1 |
agtggcaaccctgatgtttatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018659 |
agtggcaaccctgatgtttatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggaca |
2018560 |
T |
|
| Q |
101 |
aacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018559 |
aacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaa |
2018460 |
T |
|
| Q |
201 |
tcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttacca |
300 |
Q |
| |
|
||| |||||| |||||||||| || ||||||||| || || | | ||| |||||||||||||| | ||| | ||||||||| |||||||||| |
|
|
| T |
2018459 |
tcataaattcttatgggttgtaagatcaccaagtaata---cagccaatgctgcatatctttcagc---atctgatgttgaccctttacaatttttacct |
2018366 |
T |
|
| Q |
301 |
tctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttga |
400 |
Q |
| |
|
|| ||||| |||||||||| ||||| |||| | || ||| ||||||||||||| ||||||||||||||| |||| |||||| |||| |||||||||| |
|
|
| T |
2018365 |
tcagggttcttggagagaaaaaaggaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttga |
2018266 |
T |
|
| Q |
401 |
gtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
465 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
2018265 |
ctcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcct |
2018201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 58 - 465
Target Start/End: Complemental strand, 2004825 - 2004418
Alignment:
| Q |
58 |
ggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgc |
157 |
Q |
| |
|
||||||| | || |||||||| | ||||| |||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| || |||||||| | |
|
|
| T |
2004825 |
ggtgatgctaatcatgggttggaatgtctaacatggttggataaacagcaaccttgttcagttttgtatgtgtcttttgggagtggcggtacactttcac |
2004726 |
T |
|
| Q |
158 |
aagaacaaattaatgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcata |
257 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||| |||| | |||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2004725 |
aagaacaaattgttgagctggctttgggtttggaattgagtaataagatattcttgtgggttttgcgagcaccaagtagtagttcatctagtgcaggata |
2004626 |
T |
|
| Q |
258 |
tctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacct |
357 |
Q |
| |
|
| |||||||||||||||| | |||| ||| | | ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
2004625 |
tttttcagcacaaaatgatgctgacacttggcagtttttgccatccgggttcttggagagaaccaaggagaaaggttttgtcattacatcatgggtgccg |
2004526 |
T |
|
| Q |
358 |
cagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcg |
457 |
Q |
| |
|
|||||||||||||| ||||| | ||| | || |||||||||| ||| ||||| ||||| |||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
2004525 |
cagattcaaatcctaagtcacaactcagtcggcgggttcttgactcattgtggctggaattcaaccctagagagtgtggtgcatggtgtgccactaataa |
2004426 |
T |
|
| Q |
458 |
catggcct |
465 |
Q |
| |
|
|||||||| |
|
|
| T |
2004425 |
catggcct |
2004418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 23 - 449
Target Start/End: Complemental strand, 2008240 - 2007814
Alignment:
| Q |
23 |
ctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagtttt |
122 |
Q |
| |
|
|||||||||| |||||| |||| ||| ||||| |||||||||| |||||| ||| |||||||||| |||||||| ||||||||| ||||||| ||||| |
|
|
| T |
2008240 |
ctgttggacctattatcgaaacagaaacaaaatctggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcaaccttgttcggtttt |
2008141 |
T |
|
| Q |
123 |
gtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtg |
222 |
Q |
| |
|
|||||| |||||||||||||| || |||||||| || || |||||| ||||| |||||||||||||||||||||||| |||||| | |||||| || |
|
|
| T |
2008140 |
gtatgtatcttttgggagtggaggtacactttcacaggagcaaattgtggagctagctttgggtttggaattgagtaatacaaaattcttgtgggttttg |
2008041 |
T |
|
| Q |
223 |
cgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacga |
322 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||||||||||||| ||||||| |||| ||||| | ||||||||||||||||| ||||||||||| | |
|
|
| T |
2008040 |
cgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgatattgacactttgcagtttttaccatctgggttcttggagagaacca |
2007941 |
T |
|
| Q |
323 |
aggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaac |
422 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || |||||||||||||| ||||| | ||| |||| |||||||||| || ||||| ||||| ||||| |
|
|
| T |
2007940 |
aggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttgacgcattgtggctggaattcaac |
2007841 |
T |
|
| Q |
423 |
ccttgaaagtgtggtgcatggagtgcc |
449 |
Q |
| |
|
|||||| ||||||||||| || ||||| |
|
|
| T |
2007840 |
ccttgagagtgtggtgcacggtgtgcc |
2007814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 465
Target Start/End: Original strand, 1968775 - 1969223
Alignment:
| Q |
23 |
ctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcagtttt |
122 |
Q |
| |
|
|||||||||||||||||||||| ||| | || |||||||||| |||||| ||| |||||||||| |||||||| |||||||| |||| |||||||| |
|
|
| T |
1968775 |
ctgttggaccaattatccaaacagaaacaagttcaggtgatgatgctaatggcttggagtgtctggcctggttggataaacagcagccttgctcagtttt |
1968874 |
T |
|
| Q |
123 |
gtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtg |
222 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||| || ||||||||| ||||||||||| |||||||||||||||||| | |||||| |||||| || |
|
|
| T |
1968875 |
gtatgtatctttcgggagtggtggtacactttcacacgaacaaattgtggagctggctttaggtttggaattgagtaataaaaaattctcgtgggttttg |
1968974 |
T |
|
| Q |
223 |
cgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttacc------atctgggtttttggaga |
316 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||||||||||||| ||||||| |||| ||||| | |||||||| ||||||||| ||||||| |
|
|
| T |
1968975 |
cgagcaccgagtagcagttcatctagtgcaggatatctttcagcagaaaatgatattgacactttgcagtttttaccatctggatctgggttcttggaga |
1969074 |
T |
|
| Q |
317 |
gaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaa |
416 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| | |||||||| || ||||||| ||| ||||| ||||| |
|
|
| T |
1969075 |
gaaccaaggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaa |
1969174 |
T |
|
| Q |
417 |
ctcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
465 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
1969175 |
ttcaacccttgagagtgtgttgcatggtgtgccactaatcacatggcct |
1969223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 465
Target Start/End: Original strand, 1963171 - 1963611
Alignment:
| Q |
19 |
tatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcag |
118 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||| | ||| |||||||||| |||| ||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
1963171 |
tatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctgacatggttggacaaacaatgtccttgttcag |
1963270 |
T |
|
| Q |
119 |
ttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcagaaattcctatgggt |
218 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
1963271 |
ttttgtatgtttcttttggtagtggtggcacactttcgcaagaacaaattgatgagttggctttgggtttggaattgagtaatcataaattcttatgggt |
1963370 |
T |
|
| Q |
219 |
tgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagaga |
318 |
Q |
| |
|
||| |||| |||||||||| || | | ||| |||||||||||||| | ||| | ||| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
1963371 |
tgtaagagctccaagtagta---cagcaaatgctgcatatctttcagc---atctgatgttgatcctttacagtttttaccatctgggtttttggagaga |
1963464 |
T |
|
| Q |
319 |
acgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaact |
418 |
Q |
| |
|
|| ||||| |||| | || || ||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| ||| ||| ||||||||||| | |
|
|
| T |
1963465 |
accaaggaacaagggatggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaatt |
1963564 |
T |
|
| Q |
419 |
caacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
465 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||||||||| | |||||| |
|
|
| T |
1963565 |
caacccttgagagtgtggtgtatggtgtgccactaatcacttggcct |
1963611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 2015258 - 2014818
Alignment:
| Q |
19 |
tatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataatgggttgaagtgtctggcatggttggacaaacagcaaacttgttcag |
118 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||| | ||| |||||||||| |||| ||| | ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
2015258 |
tatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgaatgtctggcatggttggacaaacaacggccttgttcag |
2015159 |
T |
|
| Q |
119 |
ttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcagaaattcctatgggt |
218 |
Q |
| |
|
|| ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
2015158 |
ttctgtatgtgtctttcgggagtggtggaacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcataaattcttatgggt |
2015059 |
T |
|
| Q |
219 |
tgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagaga |
318 |
Q |
| |
|
||| || ||||||||| || || | | ||| |||||||||||||| | ||| | ||||||||| |||||||||| || ||||| ||||||||| |
|
|
| T |
2015058 |
tgtaagatcaccaagtaata---cagccaatgctgcatatctttcagc---atctgatgttgaccctttacaatttttaccttcagggttcttggagaga |
2014965 |
T |
|
| Q |
319 |
acgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaact |
418 |
Q |
| |
|
|| ||||| |||| | || ||| ||||||||||||| ||||||||||||||| |||| |||||| |||| |||||||||| ||||||||||||||| | |
|
|
| T |
2014964 |
acaaaggaacaagggatggttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaatt |
2014865 |
T |
|
| Q |
419 |
caacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
465 |
Q |
| |
|
||| ||||| |||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
2014864 |
caatgcttgagagtgtgttgcatggtgtgccactaatcacatggcct |
2014818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 152 - 465
Target Start/End: Original strand, 2436704 - 2437023
Alignment:
| Q |
152 |
tttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgc |
251 |
Q |
| |
|
|||| |||||||||||| |||||||||||| ||| |||||| |||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
2436704 |
tttcacaagaacaaattgttgagctggctttcggtctggaatcgagtaatcagaaattcttatgggttgtaagagcaccaaatagtagttcatctagtgc |
2436803 |
T |
|
| Q |
252 |
agcata----tc--tttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattaca |
345 |
Q |
| |
|
|||||| || |||||||||||||||| | |||||||||| |||||||||||| |||||| | |||||||| ||||| |||| | || ||| || |
|
|
| T |
2436804 |
agcatacttttcagtttcagcacaaaatgatgttgaccctttgcaatttttaccatgtgggttcatagagagaaccaaggatcaagggatggttattcca |
2436903 |
T |
|
| Q |
346 |
tcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggag |
445 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| || ||| |||| || ||||||||||||||||| ||||| ||||||||||| |||||||||||||| | |
|
|
| T |
2436904 |
tcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgtggtgcatggtg |
2437003 |
T |
|
| Q |
446 |
tgccactaatcgcatggcct |
465 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
2437004 |
tgccactaatcacatggcct |
2437023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 560747 - 560683
Alignment:
| Q |
128 |
tttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaa |
192 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||| |||||||||||||| || ||||| |||||| |
|
|
| T |
560747 |
tttcttttggaagtgggggcacactttcacaagaccaaattaatgagcttgccttgggattggaa |
560683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 449
Target Start/End: Complemental strand, 10201945 - 10201869
Alignment:
| Q |
373 |
agtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgcc |
449 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||| |||| ||||| |
|
|
| T |
10201945 |
agtcatatctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc |
10201869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 449
Target Start/End: Complemental strand, 10209018 - 10208942
Alignment:
| Q |
373 |
agtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgcc |
449 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||| |||| ||||| |
|
|
| T |
10209018 |
agtcatatctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcc |
10208942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 3700912 - 3701016
Alignment:
| Q |
115 |
tcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcagaaattcctat |
214 |
Q |
| |
|
|||||||||||||| | ||||| ||||| || || | || ||| ||||||| ||||| || |||||||| ||||| |||||||||||||||||| | | |
|
|
| T |
3700912 |
tcagttttgtatgtctgctttggaagtggaggaactttatctcaacaacaaatcaatgaactagctttggggttggagttgagtaatcagaaattcttgt |
3701011 |
T |
|
| Q |
215 |
gggtt |
219 |
Q |
| |
|
||||| |
|
|
| T |
3701012 |
gggtt |
3701016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 80 - 465
Target Start/End: Original strand, 5902405 - 5902787
Alignment:
| Q |
80 |
agtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggc |
179 |
Q |
| |
|
|||||||| ||||||| | ||||| ||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||| |||| |
|
|
| T |
5902405 |
agtgtctgacatggttacataaacaacaaccttgttcagttttgtatgtttcttttggaagtggtggtgcactttcacaagaacaaattgatgagttggc |
5902504 |
T |
|
| Q |
180 |
tttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggt |
279 |
Q |
| |
|
| | |||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||| | |||| ||||||||||||||| ||||||| | | |
|
|
| T |
5902505 |
tattggtttggaattgagtaatcataaattcttatgggttgtaagagcaccaagtagt---tcagccagtggtgcatatctttcagcagaaaatgatgtt |
5902601 |
T |
|
| Q |
280 |
gaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcata |
379 |
Q |
| |
|
|| | |||| | ||||||||| ||||||| ||||||||||| |||||| |||| | || ||| |||||||||||||||||||| ||| |||||||| | |
|
|
| T |
5902602 |
gatcttttgcagtttttaccacctgggttcttggagagaaccaaggagcaagggatggttattccatcatgggcacctcagattgaaacacttagtcaca |
5902701 |
T |
|
| Q |
380 |
gttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
465 |
Q |
| |
|
| ||| |||| || ||||||||||||||||| ||||| |||| |||||| |||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
5902702 |
gatcagttggtggattcttgagtcactgtggctggaattcaatccttgagagtgtgatgcatggtgtgccactaatcacatggcct |
5902787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 80 - 465
Target Start/End: Original strand, 5905889 - 5906271
Alignment:
| Q |
80 |
agtgtctggcatggttggacaaacagcaaacttgttcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggc |
179 |
Q |
| |
|
||||| || ||||||| || |||||||| |||||||||||||||||||||||||||| || ||||| ||||||| |||||||||| | ||||||| || |
|
|
| T |
5905889 |
agtgtttgacatggttagataaacagcagccttgttcagttttgtatgtttcttttggaagcggtggtgcactttcacaagaacaaactgatgagctagc |
5905988 |
T |
|
| Q |
180 |
tttgggtttggaattgagtaatcagaaattcctatgggttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggt |
279 |
Q |
| |
|
| | |||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||| | ||| |||||||||||||||||||| || | | |
|
|
| T |
5905989 |
tattggtttggaattgagtaatcataaattcttatgggttgtaagagcaccaagtagt---tcagcatgtggtgcatatctttcagcacaaaacgatgtt |
5906085 |
T |
|
| Q |
280 |
gaccctttgaaatttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcata |
379 |
Q |
| |
|
|| | || | | |||||||||||||||| ||||||||||| |||||| |||| | || ||| |||||||||||||||||||| ||||||||||||| | |
|
|
| T |
5906086 |
gatctttcgcaggttttaccatctgggttcttggagagaaccaaggagcaaggaatggttattccatcatgggcacctcagattgaaatccttagtcaca |
5906185 |
T |
|
| Q |
380 |
gttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcct |
465 |
Q |
| |
|
||| |||| || ||||||||||| |||||||||| |||| |||||| || | | ||||||| |||||||||||| |||||||| |
|
|
| T |
5906186 |
tatcagttggtggattcttgagtcattgtggttggagttcaatccttgagagcgcgatgcatggtgtgccactaatcacatggcct |
5906271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 416
Target Start/End: Complemental strand, 15496 - 15204
Alignment:
| Q |
118 |
gttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcagaaattcctatggg |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||| |||||| ||||| || ||||| ||||||||||||||| ||| | |||| | |||| |
|
|
| T |
15496 |
gttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaataaatgaactagcttttggtttggaattgagtggtcaaagattcatttggg |
15397 |
T |
|
| Q |
218 |
ttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagag |
317 |
Q |
| |
|
||||| |||||||| ||| |||| ||||||||| |||||| | | |||||| || ||||||||||||||||| ||||||||||| || |
|
|
| T |
15396 |
ttgtgagagcacca---agtgattcagttagtgcagcttatcttgaatctacaaatga---agatcctttgaaatttttacctatagggtttttggaaag |
15303 |
T |
|
| Q |
318 |
aacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaa |
416 |
Q |
| |
|
||| || || ||||||||| | | |||||||||||||||| || |||| |||| ||||||||| |||| || || || ||||| ||||||||||| |
|
|
| T |
15302 |
aaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaa |
15204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 416
Target Start/End: Original strand, 57348 - 57640
Alignment:
| Q |
118 |
gttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcagaaattcctatggg |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||| |||||| ||||| || ||||| ||||||||||||||| ||| | |||| | |||| |
|
|
| T |
57348 |
gttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaataaatgaactagcttttggtttggaattgagtggtcaaagattcatttggg |
57447 |
T |
|
| Q |
218 |
ttgtgcgagcaccaagtagtagttcatctagtgcagcatatctttcagcacaaaatgacggtgaccctttgaaatttttaccatctgggtttttggagag |
317 |
Q |
| |
|
||||| |||||||| ||| |||| ||||||||| |||||| | | |||||| || ||||||||||||||||| ||||||||||| || |
|
|
| T |
57448 |
ttgtgagagcacca---agtgattcagttagtgcagcttatcttgaatctacaaatga---agatcctttgaaatttttacctatagggtttttggaaag |
57541 |
T |
|
| Q |
318 |
aacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaa |
416 |
Q |
| |
|
||| || || ||||||||| | | |||||||||||||||| || |||| |||| ||||||||| |||| || || || ||||| ||||||||||| |
|
|
| T |
57542 |
aaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaa |
57640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 22055 - 22175
Alignment:
| Q |
114 |
ttcagttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcagaaattccta |
213 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| ||| |||||| |||||||| ||||| ||||||||||||||| ||| | |||| | |
|
|
| T |
22055 |
ttcagttttgtatgtttcttttggaagtggtggaacactttctcaaacacaaatcaatgagctagcttttggtttggaattgagtggtcaaagattcatt |
22154 |
T |
|
| Q |
214 |
tgggttgtgcgagcaccaagt |
234 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
22155 |
tgggtattgagagcaccaagt |
22175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 2805 - 2921
Alignment:
| Q |
118 |
gttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagtaatcagaaattcctatggg |
217 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||| ||| || ||||| || ||||| ||||||||||||||| ||| | |||| | |||| |
|
|
| T |
2805 |
gttttgtatgtttcttttggaagtggtggaacactttcacaaagacagatgaatgaactagcttttggtttggaattgagtggtcaaagattcatttggg |
2904 |
T |
|
| Q |
218 |
ttgtgcgagcaccaagt |
234 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
2905 |
ttgtgagagcaccaagt |
2921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 464
Target Start/End: Complemental strand, 845149 - 844977
Alignment:
| Q |
292 |
tttttaccatctgggtttttggagagaacgaaggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggag |
391 |
Q |
| |
|
||||||||| ||| |||||||| ||||| || | ||||||||| || || ||| |||||||| || ||| |||| ||| |||||||||||||||| | |
|
|
| T |
845149 |
tttttaccaaatggttttttggaaagaacaaaagggaaaggtttagtagttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtg |
845050 |
T |
|
| Q |
392 |
ggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcgcatggcc |
464 |
Q |
| |
|
|||| || | ||| ||||||||||| ||||| ||||||||||| || ||||| | ||| |||| |||||||| |
|
|
| T |
845049 |
ggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatggaattccaataatagcatggcc |
844977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 464
Target Start/End: Complemental strand, 870376 - 870261
Alignment:
| Q |
349 |
tgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgc |
448 |
Q |
| |
|
|||||||| || ||| |||| ||| |||||||||||||||| ||||| || | ||| ||||||||||| ||||| ||||||||||| || ||||| | | |
|
|
| T |
870376 |
tgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatggaattc |
870277 |
T |
|
| Q |
449 |
cactaatcgcatggcc |
464 |
Q |
| |
|
|| |||| |||||||| |
|
|
| T |
870276 |
caataatagcatggcc |
870261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 431
Target Start/End: Original strand, 4299617 - 4299667
Alignment:
| Q |
381 |
ttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaag |
431 |
Q |
| |
|
||||||||| || ||||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
4299617 |
ttcaattggtggattcttgactcactgtggatggaactcaaccattgaaag |
4299667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 16566461 - 16566542
Alignment:
| Q |
118 |
gttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagta |
199 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||||||| ||| ||| |||||||| || || || |||||||||||||||| |
|
|
| T |
16566461 |
gttttgtatgtttcttttggaagtgttggaacactttctcaaagacagattaatgaactagcctttggtttggaattgagta |
16566542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 16599201 - 16599120
Alignment:
| Q |
118 |
gttttgtatgtttcttttgggagtggtggcacactttcgcaagaacaaattaatgagctggctttgggtttggaattgagta |
199 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||||||| ||| ||| |||||||| || || || |||||||||||||||| |
|
|
| T |
16599201 |
gttttgtatgtttcttttggaagtgttggaacactttctcaaagacagattaatgaactagcctttggtttggaattgagta |
16599120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 1351118 - 1351162
Alignment:
| Q |
388 |
ggagggttcttgagtcactgtggttggaactcaacccttgaaagt |
432 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
1351118 |
ggagggtttttgagtcactgtggttggaattcaacaattgaaagt |
1351162 |
T |
|
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