View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6022_low_9 (Length: 358)
Name: NF6022_low_9
Description: NF6022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6022_low_9 |
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| [»] scaffold1215 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 10524856 - 10525202
Alignment:
| Q |
1 |
catatatgtaatgtctcatcatgaatagaatttaaacactactgagctatgttacaattaaaaaacataaatcacaatacctttcgcaagcttggcaagc |
100 |
Q |
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| T |
10524856 |
catatatgtaatgtctcatcatgaatagaatttaaacactactgagctatgttacaattaaaaaacataaatcacaatacctttcgcaagcttggcaagc |
10524955 |
T |
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| Q |
101 |
atgaattgtttacaattctggttgcagactccactaaattttcaacactaacaggacaagaaggaaaaaatgtgtgaggttaagtcccttatttgtgtgc |
200 |
Q |
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| T |
10524956 |
atgaattgtttacaattctggttgcagactccactaaattttcaacactaacaggacaagaaggaaaaaatgtgtgaggttaagtcccttaattgtgtgc |
10525055 |
T |
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| Q |
201 |
ttgaaatcatctaaattctctaaataagggggaaattttgtttttgtnnnnnnnnnnnnngggttggtttagaggttttaatttttcaccaccagaaagt |
300 |
Q |
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| T |
10525056 |
ttgaattcatttaaattctctaaataagggggaaattttgtttttgtaaaaaataaaaaagggttggtttagaggttttaatttttcaccaccagaaagt |
10525155 |
T |
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| Q |
301 |
tcaaatttatgtcatcatcacggattttactttggacagtgagtatt |
347 |
Q |
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| T |
10525156 |
tcaaatttatgtcatcatcacggattttactttggacagtgagtatt |
10525202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 10531165 - 10531309
Alignment:
| Q |
3 |
tatatgtaatgtctcatcatgaatagaatttaaacactactgagctatgttacaattaaaaaacataaatcacaatacctttcgcaagcttggcaagcat |
102 |
Q |
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| T |
10531165 |
tatatgtaatgtctcatcatgaatagaatttaaacactgctgagctatgttacaattaaagaacataaatcacaatacctttc---------gcaagcat |
10531255 |
T |
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| Q |
103 |
gaattgtttacaattctggttgcagactccactaaattttcaacactaacagga |
156 |
Q |
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| T |
10531256 |
gaattgttcgtaattctggttgcagactccgctaaattttcatcacaaacagga |
10531309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 10531817 - 10531907
Alignment:
| Q |
156 |
acaagaaggaaaaaatgtgtgaggttaagtcccttatttgtgtgcttgaaatcatctaaattctctaaataagggggaaattttgtttttg |
246 |
Q |
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| T |
10531817 |
acaagaaggaaaaaatgtgtgaggttaagtcccttatttgtgtgcttgaaatcatctaaattttcttaataagggggaaattttgtttttg |
10531907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 10534347 - 10534432
Alignment:
| Q |
161 |
aaggaaaaaatgtgtgaggttaagtcccttatttgtgtgcttgaaatcatctaaattctctaaa-taagggggaaattttgtttttg |
246 |
Q |
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| T |
10534347 |
aaggaaaaaa-gtgcgaggttaagtcccttatttgtgtgcttgatatcatgtaaattctctaaattaaggggagaattttgtttttg |
10534432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 10531973 - 10532023
Alignment:
| Q |
293 |
cagaaagttcaaatttatgtcatcatcacggattttactttggacagtgag |
343 |
Q |
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| T |
10531973 |
cagaaagttcaactttatgtcatcatcacggattttactttggacagtgag |
10532023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 10527539 - 10527590
Alignment:
| Q |
165 |
aaaaaatgtgtgaggttaagtcccttatttgtgtgcttgaaatcatctaaat |
216 |
Q |
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| T |
10527539 |
aaaaaaagtgtgaggttaagtcccttatttgtgtgcttgaaatcatttaaat |
10527590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1215 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1215
Description:
Target: scaffold1215; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 1535 - 1620
Alignment:
| Q |
161 |
aaggaaaaaatgtgtgaggttaagtcccttatttgtgtgcttgaaatcatctaaattctctaaa-taagggggaaattttgtttttg |
246 |
Q |
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| T |
1535 |
aaggaaaaaa-gtgcgaggttaagtcccttatttgtgtgcttgatatcatgtaaattctctaaattaaggggagaattttgtttttg |
1620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 34375805 - 34375730
Alignment:
| Q |
41 |
actgagctatgttacaattaaaaaacataaatcac-aatacctttcgcaagcttggcaagcatgaattgtttacaa |
115 |
Q |
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| T |
34375805 |
actgagctattttacaatcaaagaacataaatcacaaacacttttcgcaggcttggcaaggatgaattgttcacaa |
34375730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 34371710 - 34371664
Alignment:
| Q |
201 |
ttgaaatcatctaaattctctaaataaggggg-aaattttgtttttg |
246 |
Q |
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| T |
34371710 |
ttgaaatcatctaaattctctacattagggggaaaattttgtttttg |
34371664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 34478023 - 34478059
Alignment:
| Q |
41 |
actgagctatgttacaattaaaaaacataaatcacaa |
77 |
Q |
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| T |
34478023 |
actgagctatgttacaattaaagcacataaatcacaa |
34478059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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