View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6023_high_1 (Length: 553)
Name: NF6023_high_1
Description: NF6023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6023_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 22 - 540
Target Start/End: Original strand, 30543062 - 30543582
Alignment:
| Q |
22 |
cacagaagaaaacaaggtgaataatgatatgagtgcttcaaccaccgccattgttaacttgatttttcaagtaatcttcttgtttgcaagtcaaatttat |
121 |
Q |
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| T |
30543062 |
cacagaagaaaacaaggtgaataatgatatgagtgtttcaaccaccgccattgttaacttgatttttcaagtaatcttcttgtttgcaagtcaaatttat |
30543161 |
T |
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| Q |
122 |
caaacccaaatccaaaactaagggagatttaatcatatatttcagttgcttgaattacactttata--tggttataaagtcccaagattaaataaaaagt |
219 |
Q |
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| T |
30543162 |
caaacccaaatccaaaactaagggagatttaatcatatatttcagttgcttgaattacactttatatatggttataaagtgccaagattaaataaaaagt |
30543261 |
T |
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| Q |
220 |
gagtttagctcaatttttaaaactaaactactagttagtactcacaacttttgataacatctctccaactgctttgatgaaaccatcttacaattttgtc |
319 |
Q |
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| T |
30543262 |
gagttgagctcaatttttaaaactaaactactagttagtactcacaacttttgataacatctctccaactgctttgatgaaatcatcttacaattttgac |
30543361 |
T |
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| Q |
320 |
taaatacatgcctatgcagaaatttagatgaattgagtcttgaagtctcaccgaaattcataaaacacttacaaagatacttatatattactatttatca |
419 |
Q |
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| T |
30543362 |
taaatacatgcctatgcagaaatttaggtgaattgagtctcgaagtctcaccaaaattcataaaacgcttacaaagatacttatatattactatttgtca |
30543461 |
T |
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| Q |
420 |
acaaagttcttatgcaattgagctgaattcacacatttataggatatgatgataaccaaacttttttatcaaatgaaccaacctcaaaatgaagcaatca |
519 |
Q |
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| T |
30543462 |
acaaagttcttatgcaattgagctgaattcacacatttatagggtatgatgataaccaaatttttttatcaaatgaaccaacctcaaaatgaagcaatca |
30543561 |
T |
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| Q |
520 |
catgggagttttttcccttag |
540 |
Q |
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| T |
30543562 |
catgggagttttttcccttag |
30543582 |
T |
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