View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6023_high_13 (Length: 254)
Name: NF6023_high_13
Description: NF6023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6023_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 10068334 - 10068098
Alignment:
| Q |
11 |
taatgaatcattggaaaaaccagcttctagatgtagtgttcttgatccacaaggtccactacttcagaaatggaacaagatctttgttataacatgtgtg |
110 |
Q |
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| T |
10068334 |
taatgaatcattggaaaaaccagcttctaggtgtagtgttcttgatccacaaggtccactacttcagaaatggaacaagatctttgttataacatgtgtg |
10068235 |
T |
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| Q |
111 |
atggcagtatctatggatccattattcttttacatccctgtgattgatgaccagagaaaatgccttaatttgaatggaacattgaagattactgctagtg |
210 |
Q |
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| T |
10068234 |
atggcagtatctatggatccattattcttttacatccctgtgattgatgaccagagaaaatgccttaatttgaatggaacattgaagattactgctagtg |
10068135 |
T |
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| Q |
211 |
ttcttcggacgtttttcgatcttttctatattcttcg |
247 |
Q |
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| T |
10068134 |
ttcttcggacgtttttcgatcttttctacattattcg |
10068098 |
T |
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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 247
Target Start/End: Original strand, 48464055 - 48464253
Alignment:
| Q |
49 |
ttcttgatccacaaggtccactacttcagaaatggaacaagatctttgttataacatgtgtgatggcagtatctatggatccattattcttttacatccc |
148 |
Q |
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| T |
48464055 |
ttcttgatccacaggggcctatgcttcagaaatggaacaaaatctttgtaatcacatgtgtgctggcaatttctgtggacccttttttcttttacattcc |
48464154 |
T |
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| Q |
149 |
tgtgattgatgaccagagaaaatgccttaatttgaatggaacattgaagattactgctagtgttcttcggacgtttttcgatcttttctatattcttcg |
247 |
Q |
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| T |
48464155 |
agtgattgtcggtaaacaaaaatgtcttgatttggatggaacattgcagactactatcagtgttcttcgcacgttcttcgatcttttctacattcttcg |
48464253 |
T |
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