View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6023_high_3 (Length: 515)
Name: NF6023_high_3
Description: NF6023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6023_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 213 - 498
Target Start/End: Complemental strand, 6711806 - 6711519
Alignment:
| Q |
213 |
tttattaaaataaaaagagaattacaaagaatactaatttcacaatccggaaaaagtacaaggtatttgaccagcaaaaacaaacaccatatttcaagaa |
312 |
Q |
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| T |
6711806 |
tttattaaaataaaaagagaattacaaagaatactaatttcacaatccagaaaaagtacaaggtatttgaccagcaaaaacaaacaccatatttcaagaa |
6711707 |
T |
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| Q |
313 |
ttgagacacatgatagggtttgaaaacattcaaagtatctcctt--ttttctcagggataaactatctctaagaggttactttaattgcatctaccatct |
410 |
Q |
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| T |
6711706 |
ttgagacacatgatagggtttgaaaacattcaaagtatctccttttttttctcagggataaactatctctaagaggttactttaattgcatctacaatct |
6711607 |
T |
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| Q |
411 |
cttcaagcaccagagtctttgaggaaaaatcatttcattacgagcctcccaaatctttcgaattacagtgtgccaaatttagtttttg |
498 |
Q |
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| T |
6711606 |
cttcaagcaccagagtctttgaagaaaaatcatttcattacgagccacccaaatctttcgaattacactgtgccaaatttagtttttg |
6711519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 339
Target Start/End: Original strand, 29243896 - 29244009
Alignment:
| Q |
228 |
agagaattacaaagaatactaatttcacaatccggaaaaagtacaagg--tatttgaccagcaaaaacaaacaccatatttcaagaattgagacacatga |
325 |
Q |
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| T |
29243896 |
agagaagtacaaagagtattaatcccacaatctgagaaaagtacaaggattacttgacccgcaaaaacaaacaccttgtatcaagaattgagacacaaga |
29243995 |
T |
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| Q |
326 |
tagggtttgaaaac |
339 |
Q |
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| T |
29243996 |
gagggtttgaaaac |
29244009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 432
Target Start/End: Original strand, 29244035 - 29244111
Alignment:
| Q |
356 |
tttttctcagggataaactatctctaagaggttactttaattgcatctaccatctcttcaagcaccagagtctttga |
432 |
Q |
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||||||| || || |||| |||||||||||||| |||| |||||||||| ||||||||| ||| |||||||||| |
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| T |
29244035 |
tttttcttagtgagaaaccatctctaagaggttgctttgattgcatctaaaatctcttcaccgaccggagtctttga |
29244111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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