View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6023_low_12 (Length: 255)
Name: NF6023_low_12
Description: NF6023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6023_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 48178247 - 48178472
Alignment:
| Q |
1 |
ttctcttttctcccatatggctgcctcttttattgaatgtggaaaattttagacatatttgaatgagtacatttattgaacacgataattacaaatttaa |
100 |
Q |
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| T |
48178247 |
ttctcttttctcccatatggctgcctcttttattgaatgtggaaaattttagacatatttgaatgagtacatttattgaacacgataattacaaatttaa |
48178346 |
T |
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| Q |
101 |
aatatattgaaatcaatgtgggaaatatatttgaatgagtacttctattcccctattttgtgttggttttacttgctaataatgagattattgcaatttt |
200 |
Q |
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| T |
48178347 |
aatatattgaaatcaatgtggaaaatatatttgaatcagtacttctattcccctattttgtgttggttttacttgctaataatgagattattgcaatttt |
48178446 |
T |
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| Q |
201 |
aagaaataataatgttgaaatcttct |
226 |
Q |
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| T |
48178447 |
aagaaataataatgttgaaatcttct |
48178472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 48178497 - 48178529
Alignment:
| Q |
208 |
aataatgttgaaatcttctttatagtagttcat |
240 |
Q |
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| T |
48178497 |
aataatgttgaaatcttctttatagtagttcat |
48178529 |
T |
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