View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6023_low_19 (Length: 221)
Name: NF6023_low_19
Description: NF6023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6023_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 45281955 - 45281758
Alignment:
| Q |
5 |
ggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatggctcc |
104 |
Q |
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| T |
45281955 |
ggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatggctcc |
45281856 |
T |
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| Q |
105 |
aagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaaagcttgaaaattaaacatgtaacactcagcg |
202 |
Q |
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| T |
45281855 |
aagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaaagcttgaaaattaaacatgtaacactcagcg |
45281758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 45273711 - 45273529
Alignment:
| Q |
5 |
ggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatggctcc |
104 |
Q |
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| T |
45273711 |
ggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatggctcc |
45273612 |
T |
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| Q |
105 |
aagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaaagcttgaaaattaaac |
187 |
Q |
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| T |
45273611 |
aagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaaagcttgaaaattaaac |
45273529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 45293299 - 45293106
Alignment:
| Q |
1 |
cactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatgg |
100 |
Q |
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| T |
45293299 |
cactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctaccaaattcactgctggtttatgg |
45293200 |
T |
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| Q |
101 |
ctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaaagcttgaaaattaaacatgtaac |
194 |
Q |
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| T |
45293199 |
ctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttcaaagcttgaaaattaaacatgtaac |
45293106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 45302259 - 45302066
Alignment:
| Q |
1 |
cactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatgg |
100 |
Q |
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||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||| |
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| T |
45302259 |
cactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccgaggctaccaaattcactgctggtttatgg |
45302160 |
T |
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| Q |
101 |
ctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaaagcttgaaaattaaacatgtaac |
194 |
Q |
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|||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
45302159 |
ctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttcaaagcttgaaaattaaacatgtaac |
45302066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 45270165 - 45269967
Alignment:
| Q |
1 |
cactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccgaggctaacaaattcacagctggtatatgg |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||||||| |||||||| ||||| ||| || |||||||| |
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| T |
45270165 |
cactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcgaggctaccaaatacaccgccagtatatgg |
45270066 |
T |
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| Q |
101 |
ctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaaagcttgaaaattaaac |
187 |
Q |
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||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270065 |
ctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcactaccttggcttcaaagcttgaaaattaaac |
45269967 |
T |
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