View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6023_low_2 (Length: 536)

Name: NF6023_low_2
Description: NF6023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6023_low_2
NF6023_low_2
[»] chr6 (8 HSPs)
chr6 (1-403)||(24139653-24140053)
chr6 (448-521)||(24139561-24139633)
chr6 (439-511)||(17180202-17180275)
chr6 (441-511)||(11527526-11527597)
chr6 (439-509)||(20575400-20575471)
chr6 (449-511)||(32417468-32417530)
chr6 (449-511)||(32423309-32423371)
chr6 (439-511)||(16168453-16168526)
[»] chr8 (17 HSPs)
chr8 (439-506)||(29792595-29792663)
chr8 (441-511)||(43422847-43422918)
chr8 (449-509)||(35433895-35433955)
chr8 (439-521)||(9770848-9770931)
chr8 (449-511)||(45017745-45017807)
chr8 (439-506)||(11113538-11113606)
chr8 (23-63)||(17454750-17454790)
chr8 (441-511)||(8713835-8713906)
chr8 (439-498)||(23179035-23179094)
chr8 (449-507)||(29794334-29794392)
chr8 (439-511)||(9277056-9277128)
chr8 (439-506)||(13771884-13771952)
chr8 (440-511)||(23553343-23553415)
chr8 (458-506)||(25730140-25730188)
chr8 (439-506)||(25737091-25737159)
chr8 (458-506)||(25737626-25737674)
chr8 (440-511)||(36314719-36314791)
[»] scaffold0019 (1 HSPs)
scaffold0019 (439-511)||(124420-124493)
[»] chr2 (7 HSPs)
chr2 (449-506)||(34336342-34336399)
chr2 (440-511)||(34336023-34336095)
chr2 (455-511)||(16781052-16781108)
chr2 (455-506)||(34336282-34336333)
chr2 (450-511)||(8260384-8260445)
chr2 (450-511)||(27893034-27893095)
chr2 (455-511)||(34429685-34429741)
[»] chr7 (9 HSPs)
chr7 (449-521)||(21433143-21433215)
chr7 (440-511)||(33879579-33879651)
chr7 (450-521)||(23150639-23150710)
chr7 (450-521)||(35215377-35215448)
chr7 (449-511)||(1441496-1441558)
chr7 (453-506)||(28256556-28256609)
chr7 (453-509)||(4187695-4187751)
chr7 (455-511)||(5805043-5805099)
chr7 (455-511)||(8039668-8039724)
[»] chr1 (4 HSPs)
chr1 (455-506)||(17898856-17898907)
chr1 (449-511)||(27351598-27351660)
chr1 (455-509)||(44963904-44963958)
chr1 (449-511)||(49650572-49650634)
[»] chr5 (5 HSPs)
chr5 (449-511)||(36417885-36417947)
chr5 (439-509)||(1722488-1722559)
chr5 (449-528)||(35891247-35891326)
chr5 (455-511)||(5735043-5735099)
chr5 (453-509)||(18951366-18951422)
[»] chr4 (5 HSPs)
chr4 (29-71)||(21233111-21233153)
chr4 (440-511)||(2788779-2788851)
chr4 (450-511)||(19631763-19631824)
chr4 (449-506)||(52181714-52181771)
chr4 (459-511)||(35046437-35046489)
[»] scaffold0746 (2 HSPs)
scaffold0746 (455-506)||(543-594)
scaffold0746 (455-511)||(598-654)
[»] chr3 (1 HSPs)
chr3 (449-511)||(31247707-31247769)
[»] scaffold0374 (1 HSPs)
scaffold0374 (449-509)||(16172-16232)


Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 24140053 - 24139653
Alignment:
Q  1 aataaatgtttagagggtaaattttggggtttgacattgactcgaagagtgcactttactttatcatatcatgtgacgggctactgcatgagatgaacat 100  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24140053 aataaatgtttagagagtaaattttggggtttgacaccgactcgaagagtgcactttactttatcatatcatgtgacgggctactgcatgagatgaacat 24139954  T
Q  101 tggtgcactttactttgaatgattctttgtaatgtagcattatgagaaggcattaatatacaagactaatttttcaattaacatttgatactgatactgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  24139953 tggtgcactttactttgaatgattctttgtaatgtagcattatgagaaggcattaata--caagactaatttttcaattaacatttgatactgatactgc 24139856  T
Q  201 tgatattgatggatatgatgtaagtgctttgcttatataatcttagcatgacttatgttgtgattatattgtttagtattatctttgttggacaataatt 300  Q
    || |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24139855 tggtattgatggatatgatgtaagtactttgcttatataatcttagcatgtcttatgttgtgattatattgtttagtattatctttgttggacaataatt 24139756  T
Q  301 gtcatatttggttaattcatgcaaattaatgagaagatggatgcctagcatggctaatctcgtcgggctaaagaattcagcaaacttaaccttttctcca 400  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24139755 gtcatatttggttaattcatgcaaattaatgagaagatggatccctagcatggctaatctcgtcgggctaaagaattcagcaaacttaaccttttctcca 24139656  T
Q  401 aag 403  Q
    |||    
T  24139655 aag 24139653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 448 - 521
Target Start/End: Complemental strand, 24139633 - 24139561
Alignment:
Q  448 attttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaattgagtcttttt 521  Q
    ||||||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  24139633 attttgatccttttagtt-gacataattcacaaattagtcctttaagtttcgaaagttttaattaagtcctttt 24139561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 511
Target Start/End: Complemental strand, 17180275 - 17180202
Alignment:
Q  439 ccaaataccatttt-gatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||||||||| | |||||||| ||| ||||||||   |||||| |||||||| |||||||||||||||||    
T  17180275 ccaaataccatttttggtccttttagttttatataatttttaaattaatcctttaagtttcgaaagttttaatt 17180202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 11527526 - 11527597
Alignment:
Q  441 aaatacca-ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||| ||||| |||||||| ||||| |||||||  || |||||||||||| |||||||||||| ||||    
T  11527526 aaataccacttttggtccttttactttgacataattcctaagttagtcctttaagtttcgaaagtttcaatt 11527597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 509
Target Start/End: Original strand, 20575400 - 20575471
Alignment:
Q  439 ccaaataccatt-ttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaa 509  Q
    |||||||||| | ||| |||||||| ||||||| ||||  ||| |||||||||||| |||||||||||||||    
T  20575400 ccaaataccactattggtccttttagtttgatagaatttccaagttagtcctttaagtttcgaaagttttaa 20575471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 511
Target Start/End: Original strand, 32417468 - 32417530
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    ||||| |||||||| ||||| | ||||  ||| |||||||||||| |||||||||||||||||    
T  32417468 ttttggtccttttagtttgacagaattttcaagttagtcctttaagtttcgaaagttttaatt 32417530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 511
Target Start/End: Original strand, 32423309 - 32423371
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    ||||| |||||||| ||||| | ||||  ||| |||||||||||| |||||||||||||||||    
T  32423309 ttttggtccttttagtttgacagaattttcaagttagtcctttaagtttcgaaagttttaatt 32423371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 511
Target Start/End: Original strand, 16168453 - 16168526
Alignment:
Q  439 ccaaatacca-ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||||| ||||| |||||||| ||||||| ||||| ||  |||||||||||| ||| |||||||| ||||    
T  16168453 ccaaataccacttttggtccttttagtttgatagaattctcacgttagtcctttaagttttgaaagtttcaatt 16168526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 29792663 - 29792595
Alignment:
Q  439 ccaaataccattttga-tccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttt 506  Q
    |||||||||||||| | |||||||| ||||| | ||||| |||||||||||||||||||||||||||||    
T  29792663 ccaaataccatttttagtccttttagtttgacagaattcccaaattagtcctttaaatttcgaaagttt 29792595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 43422847 - 43422918
Alignment:
Q  441 aaatacca-ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||| ||||||| |||||| ||||||||||||| |||||||||||||||| ||| |||||||| ||||    
T  43422847 aaataccacttttgattcttttagtttgatataattctcaaattagtcctttaagttttgaaagtttcaatt 43422918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 509
Target Start/End: Original strand, 35433895 - 35433955
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaa 509  Q
    ||||| |||||||||||||||| ||||||||| |||||| ||||| |||| ||||||||||    
T  35433895 ttttggtccttttaatttgatagaattcacaagttagtcatttaagtttcaaaagttttaa 35433955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 521
Target Start/End: Complemental strand, 9770931 - 9770848
Alignment:
Q  439 ccaaatacca-ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaattgagtcttttt 521  Q
    |||||||||| ||||| |||||||| ||||| | ||||| ||| |||||||||||| |||||||||||| |||| |||| ||||    
T  9770931 ccaaataccacttttggtccttttagtttgacaaaattctcaagttagtcctttaagtttcgaaagtttcaattaagtcatttt 9770848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 511
Target Start/End: Original strand, 45017745 - 45017807
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    ||||| |||||||| ||||||| ||||| ||| |||||||||||| |||||||||||| ||||    
T  45017745 ttttggtccttttagtttgatagaattcccaagttagtcctttaagtttcgaaagtttcaatt 45017807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 11113538 - 11113606
Alignment:
Q  439 ccaaataccatttt-gatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttt 506  Q
    |||||||||| ||| |||||||||| ||||| |||||||  || |||||||||||||||| ||||||||    
T  11113538 ccaaataccactttagatccttttagtttgacataattcctaagttagtcctttaaattttgaaagttt 11113606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 17454750 - 17454790
Alignment:
Q  23 tttggggtttgacattgactcgaagagtgcactttacttta 63  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  17454750 tttggagtttgacattgattcgaagagtgcactttacttta 17454790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 8713835 - 8713906
Alignment:
Q  441 aaatacca-ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||| ||||| |||||||| ||||| ||||||| ||| |||||||||||| |||| ||||||| ||||    
T  8713835 aaataccacttttggtccttttagtttgacataattctcaagttagtcctttaagtttcaaaagtttcaatt 8713906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 498
Target Start/End: Original strand, 23179035 - 23179094
Alignment:
Q  439 ccaaataccattttgatccttttaatttgatataattcacaaattagtcctttaaatttc 498  Q
    ||||||||||||||| |||||||| ||||| | ||||| ||| |||||||||||| ||||    
T  23179035 ccaaataccattttggtccttttagtttgacagaattcccaagttagtcctttaagtttc 23179094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 507
Target Start/End: Complemental strand, 29794392 - 29794334
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagtttt 507  Q
    ||||| || ||||| ||||| | ||||| ||| ||||||||||||||||||||||||||    
T  29794392 ttttggtcattttagtttgacagaattcccaagttagtcctttaaatttcgaaagtttt 29794334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 511
Target Start/End: Complemental strand, 9277128 - 9277056
Alignment:
Q  439 ccaaataccattttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    ||||||||||  |||||| ||||| ||||| | ||||| ||| |||||| ||||| |||||||||||| ||||    
T  9277128 ccaaataccacgttgatcattttagtttgacagaattcccaagttagtcttttaagtttcgaaagtttcaatt 9277056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 13771952 - 13771884
Alignment:
Q  439 ccaaataccatttt-gatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttt 506  Q
    |||||||||||||| | || ||||| ||||| ||||||| ||| |||||||||||| |||| |||||||    
T  13771952 ccaaataccatttttggtcattttagtttgacataattcccaagttagtcctttaagtttcaaaagttt 13771884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 511
Target Start/End: Original strand, 23553343 - 23553415
Alignment:
Q  440 caaataccat-tttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||||| ||||||||||||| ||||| | ||||| ||| ||  |||||||| |||||||||||| ||||    
T  23553343 caaataccatgtttgatccttttagtttgacagaattctcaacttgatcctttaagtttcgaaagtttcaatt 23553415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 25730188 - 25730140
Alignment:
Q  458 ttttaatttgatataattcacaaattagtcctttaaatttcgaaagttt 506  Q
    ||||||||||| | ||||| ||| ||||||||||||||||| |||||||    
T  25730188 ttttaatttgacagaattctcaagttagtcctttaaatttcaaaagttt 25730140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 25737091 - 25737159
Alignment:
Q  439 ccaaataccat-tttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttt 506  Q
    ||||||||||| |||| |||||||| ||||| ||||||  ||| |||||||||||| |||| |||||||    
T  25737091 ccaaataccatatttggtccttttagtttgacataattttcaagttagtcctttaagtttcaaaagttt 25737159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 25737674 - 25737626
Alignment:
Q  458 ttttaatttgatataattcacaaattagtcctttaaatttcgaaagttt 506  Q
    ||||||||||| | ||||| ||| ||||||||||||||||| |||||||    
T  25737674 ttttaatttgacagaattctcaagttagtcctttaaatttcaaaagttt 25737626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 511
Target Start/End: Complemental strand, 36314791 - 36314719
Alignment:
Q  440 caaatacca-ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    ||||||||| ||||| |||||||| ||||| | ||||  ||| |||||| |||||||||||||||||| ||||    
T  36314791 caaataccacttttggtccttttagtttgacaaaattatcaagttagtcttttaaatttcgaaagtttcaatt 36314719  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 511
Target Start/End: Complemental strand, 124493 - 124420
Alignment:
Q  439 ccaaatacca-ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||||| ||||| |||||||  ||||||||||||| ||| |||||||||||| |||||||||||| ||||    
T  124493 ccaaataccacttttggtcctttttgtttgatataattcccaagttagtcctttaagtttcgaaagtttcaatt 124420  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 506
Target Start/End: Complemental strand, 34336399 - 34336342
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttt 506  Q
    ||||| |||||||| ||||| | ||||| |||||||||||||||||||||||||||||    
T  34336399 ttttggtccttttagtttgacagaattctcaaattagtcctttaaatttcgaaagttt 34336342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 511
Target Start/End: Original strand, 34336023 - 34336095
Alignment:
Q  440 caaatacca-ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    ||||||||| |||||||||||||| ||||||| ||||  |||||||||||||||| ||| |||||||| ||||    
T  34336023 caaataccacttttgatccttttagtttgataaaattttcaaattagtcctttaagttttgaaagtttcaatt 34336095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 511
Target Start/End: Complemental strand, 16781108 - 16781052
Alignment:
Q  455 tccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||| ||||| | ||||||||| ||||||||||||||||| ||||||| ||||    
T  16781108 tccttttagtttgacaaaattcacaagttagtcctttaaatttcaaaagtttcaatt 16781052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 506
Target Start/End: Complemental strand, 34336333 - 34336282
Alignment:
Q  455 tccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttt 506  Q
    |||||||||||||| | ||||| ||||||||| ||||||||||| |||||||    
T  34336333 tccttttaatttgacaaaattctcaaattagttctttaaatttcaaaagttt 34336282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 8260384 - 8260445
Alignment:
Q  450 tttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    ||||||| ||||| ||| | | ||||| |||||||||||||||| |||||||||||| ||||    
T  8260384 tttgatcattttagttttacagaattctcaaattagtcctttaagtttcgaaagtttcaatt 8260445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 27893034 - 27893095
Alignment:
Q  450 tttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||| |||||||| ||||| | ||||| ||| ||| ||||||||||||||||||||| ||||    
T  27893034 tttggtccttttagtttgacagaattctcaagttaatcctttaaatttcgaaagtttcaatt 27893095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 511
Target Start/End: Original strand, 34429685 - 34429741
Alignment:
Q  455 tccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||| ||||| | ||||| ||| ||||||||||||||||||||| ||| ||||    
T  34429685 tccttttagtttgacagaattctcaagttagtcctttaaatttcgaaaatttcaatt 34429741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 521
Target Start/End: Original strand, 21433143 - 21433215
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaattgagtcttttt 521  Q
    |||||||||||||| ||||| | ||||||||| |||||||||||| ||||||| |||| |||| |||| ||||    
T  21433143 ttttgatccttttagtttgacaaaattcacaagttagtcctttaagtttcgaatgtttcaattaagtcctttt 21433215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 511
Target Start/End: Complemental strand, 33879651 - 33879579
Alignment:
Q  440 caaataccatttt-gatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    ||||||||||||| | |||||||| ||||| | ||||||||| |||||||||||| |||||||||||| ||||    
T  33879651 caaataccatttttggtccttttagtttgacagaattcacaagttagtcctttaagtttcgaaagtttcaatt 33879579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 521
Target Start/End: Original strand, 23150639 - 23150710
Alignment:
Q  450 tttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaattgagtcttttt 521  Q
    |||| |||||||| ||||| ||||||| ||| |||||||||||||||| |||||||| |||| |||| ||||    
T  23150639 tttggtccttttagtttgacataattctcaagttagtcctttaaattttgaaagtttcaattaagtcatttt 23150710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 521
Target Start/End: Complemental strand, 35215448 - 35215377
Alignment:
Q  450 tttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaattgagtcttttt 521  Q
    ||||||||||||| ||||| | ||||  ||| ||||||||||||||||||||| ||| |||| |||| ||||    
T  35215448 tttgatccttttagtttgacaaaattttcaagttagtcctttaaatttcgaaaatttcaattaagtcatttt 35215377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 511
Target Start/End: Complemental strand, 1441558 - 1441496
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    ||||| |||||||| ||||| ||||||| ||| |||||||||||  |||||||||||| ||||    
T  1441558 ttttggtccttttagtttgacataattcccaagttagtcctttaggtttcgaaagtttcaatt 1441496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 506
Target Start/End: Original strand, 28256556 - 28256609
Alignment:
Q  453 gatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttt 506  Q
    |||||||||| ||||| | ||||| ||| ||||||||||||||||| |||||||    
T  28256556 gatccttttagtttgacagaattctcaagttagtcctttaaatttcaaaagttt 28256609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 509
Target Start/End: Complemental strand, 4187751 - 4187695
Alignment:
Q  453 gatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaa 509  Q
    |||||||||||||||| | ||||  ||| ||||||||||||||||  ||||||||||    
T  4187751 gatccttttaatttgacagaattttcaagttagtcctttaaattttaaaagttttaa 4187695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 511
Target Start/End: Original strand, 5805043 - 5805099
Alignment:
Q  455 tccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||| ||||| | ||||| ||| |||||||||||| |||||||||||| ||||    
T  5805043 tccttttagtttgacagaattctcaagttagtcctttaagtttcgaaagtttcaatt 5805099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 511
Target Start/End: Original strand, 8039668 - 8039724
Alignment:
Q  455 tccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||| ||||| ||||||| ||| ||||| |||||| |||||||||||| ||||    
T  8039668 tccttttagtttgacataattctcaagttagttctttaagtttcgaaagtttcaatt 8039724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 455 - 506
Target Start/End: Complemental strand, 17898907 - 17898856
Alignment:
Q  455 tccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttt 506  Q
    |||||||| ||||||| |||||||||||||||||||||| |||| |||||||    
T  17898907 tccttttagtttgatagaattcacaaattagtcctttaagtttcaaaagttt 17898856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 511
Target Start/End: Complemental strand, 27351660 - 27351598
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    ||||| |||||||||||||| ||||||| ||| ||  | |||||| |||||||||||||||||    
T  27351660 ttttggtccttttaatttgacataattctcaagttgatactttaagtttcgaaagttttaatt 27351598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 509
Target Start/End: Original strand, 44963904 - 44963958
Alignment:
Q  455 tccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaa 509  Q
    |||||||| |||||||  |||| |||||||||||||||| |||| ||||||||||    
T  44963904 tccttttagtttgataggattcccaaattagtcctttaagtttcaaaagttttaa 44963958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 511
Target Start/End: Original strand, 49650572 - 49650634
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||| ||||||||| ||||| ||||||| ||| |||||||||||||||| |||| ||| ||||    
T  49650572 tttttatccttttagtttgacataattctcaagttagtcctttaaattttgaaaatttcaatt 49650634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 511
Target Start/End: Original strand, 36417885 - 36417947
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||||||||| ||| | | ||||| ||| ||||||||||||||||||||||||| ||||    
T  36417885 ttttgatccttttagtttaacagaattctcaagttagtcctttaaatttcgaaagtttcaatt 36417947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 509
Target Start/End: Original strand, 1722488 - 1722559
Alignment:
Q  439 ccaaataccat-tttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaa 509  Q
    ||||||||||| |||| |||||||| ||| | | ||||||||| |||||||||||| |||| ||||||||||    
T  1722488 ccaaataccatgtttggtccttttagtttaacaaaattcacaagttagtcctttaattttcaaaagttttaa 1722559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 528
Target Start/End: Complemental strand, 35891326 - 35891247
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaattgagtcttttttgatgat 528  Q
    |||||||||||||| ||||| ||||||  ||| |||||||||||| |||| ||||||| || | ||| ||||||| ||||    
T  35891326 ttttgatccttttagtttgacataattttcaagttagtcctttaagtttcaaaagtttcaaataagttttttttgttgat 35891247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 511
Target Start/End: Complemental strand, 5735099 - 5735043
Alignment:
Q  455 tccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||| ||||||  ||||| ||| |||||| |||||||||||||| ||||||||    
T  5735099 tccttttagtttgatcgaattctcaagttagtcatttaaatttcgaaaattttaatt 5735043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 509
Target Start/End: Original strand, 18951366 - 18951422
Alignment:
Q  453 gatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaa 509  Q
    |||||||||| ||||||| ||||| ||| |||||||||||| |||  ||||||||||    
T  18951366 gatccttttagtttgatagaattctcaagttagtcctttaagttttaaaagttttaa 18951422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 21233111 - 21233153
Alignment:
Q  29 gtttgacattgactcgaagagtgcactttactttatcatatca 71  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  21233111 gtttgacactgactcgaagagtgcactttactttatcgtatca 21233153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 511
Target Start/End: Original strand, 2788779 - 2788851
Alignment:
Q  440 caaatacca-ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    ||||||||| |||| ||||||||| ||||||  ||||| ||| |||||||||||| |||||||||||| ||||    
T  2788779 caaataccacttttaatccttttagtttgatgaaattctcaagttagtcctttaagtttcgaaagtttcaatt 2788851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 19631763 - 19631824
Alignment:
Q  450 tttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||| |||||||| ||||| | ||||| ||| |||||||||||| |||||||||||| ||||    
T  19631763 tttggtccttttattttgacaaaattctcaagttagtcctttaagtttcgaaagtttcaatt 19631824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 506
Target Start/End: Original strand, 52181714 - 52181771
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttt 506  Q
    |||||||||||||| ||||| | ||||| ||| ||||| |||||||||| ||||||||    
T  52181714 ttttgatccttttagtttgacaaaattctcaagttagttctttaaattttgaaagttt 52181771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 511
Target Start/End: Original strand, 35046437 - 35046489
Alignment:
Q  459 tttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||| ||||| ||||||  ||| |||||||||||| |||||||||||||||||    
T  35046437 tttagtttgacataattttcaatttagtcctttaagtttcgaaagttttaatt 35046489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 506
Target Start/End: Complemental strand, 594 - 543
Alignment:
Q  455 tccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttt 506  Q
    |||||||||||||| | ||||| ||| ||||||||||||||||| |||||||    
T  594 tccttttaatttgacagaattctcaagttagtcctttaaatttcaaaagttt 543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 455 - 511
Target Start/End: Complemental strand, 654 - 598
Alignment:
Q  455 tccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    |||||||||||||||| ||||  ||| |||||||||||| ||| |||||||| ||||    
T  654 tccttttaatttgatagaattttcaagttagtcctttaagttttgaaagtttcaatt 598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 511
Target Start/End: Complemental strand, 31247769 - 31247707
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaatt 511  Q
    ||||| |||||||||||||| | ||||  ||| |||||||||||| |||||||||||| ||||    
T  31247769 ttttggtccttttaatttgacagaatttccaagttagtcctttaagtttcgaaagtttcaatt 31247707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 509
Target Start/End: Original strand, 16172 - 16232
Alignment:
Q  449 ttttgatccttttaatttgatataattcacaaattagtcctttaaatttcgaaagttttaa 509  Q
    ||||| |||||||| ||||||| ||||  |||||||||||||||| |||  ||||||||||    
T  16172 ttttggtccttttagtttgataaaatttccaaattagtcctttaagtttaaaaagttttaa 16232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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