View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6023_low_4 (Length: 388)
Name: NF6023_low_4
Description: NF6023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6023_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 316
Target Start/End: Original strand, 6711153 - 6711455
Alignment:
| Q |
14 |
tatttgaagtttaatgtagatgataagaaatataatgtcacgtgattcaatggctaaatttgattaatttcgtaatctcttgtnnnnnnntaatgactaa |
113 |
Q |
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| T |
6711153 |
tatttgaagtttaatgtagatgataagaaatataatgtcacgtgattcaatggctaaatttgattaatttcgtaatctcttgtaaaaaaataatgactaa |
6711252 |
T |
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| Q |
114 |
ttttgtaatcttaaatgttactactataagtgatgtaaaacaaaattaagacagaatgaagtggtgtaaatataaagttttgcaacaggtgtaattgtat |
213 |
Q |
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| T |
6711253 |
ttttgtaatcttaaatgttactactataagtgatgtaaaacaaaattaagacagaatgaagtggtgtaaatataaagttttgcaacaggtgtaattgtat |
6711352 |
T |
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| Q |
214 |
catatcatgaaggataatgaaattgaaaacattttattcatgatgcaggattcttttgttttgtgacacacatagattttcactctatttacaatttaat |
313 |
Q |
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| T |
6711353 |
catatcatgaaggataatgaaattgaaaacattttattcatgatgtaggattcttttgttttgtgacacacataaattttcactctatttacaatttaat |
6711452 |
T |
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| Q |
314 |
ctc |
316 |
Q |
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| T |
6711453 |
ctc |
6711455 |
T |
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