View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6023_low_5 (Length: 344)
Name: NF6023_low_5
Description: NF6023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6023_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 93 - 341
Target Start/End: Complemental strand, 2713364 - 2713119
Alignment:
| Q |
93 |
cacatgtaaaagtttcctcttgttgtaattggtttcaggccatgatcgactgtcaccctttgtggaaatgattggtcttaaaattttggtttagctgaag |
192 |
Q |
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| T |
2713364 |
cacatgtaaaagtttcctcttgttgtaattggtttcaggccatgatcgactgtcaccctttgtggaaatgattggtcttaaaattttggttcagctcaac |
2713265 |
T |
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| Q |
193 |
tcacttggtccaaatcaatttgtaaggtgattgccgtctacaattatatatacataattatattttattcaatgtatgacttttaacatttggattagac |
292 |
Q |
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| T |
2713264 |
tcacttgatccaaatcgatttgtaaggtgatgaccatctacaa-tatatatatata--tatttattattcaatgtataatttttaacatttgaattagac |
2713168 |
T |
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| Q |
293 |
atctaaaacttgatctgagtaatttgataactgtgacttcatatcagtc |
341 |
Q |
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| T |
2713167 |
atctaaaacttgatctgagtaatttaataactgtgacttaatatcagtc |
2713119 |
T |
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