View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6023_low_6 (Length: 328)

Name: NF6023_low_6
Description: NF6023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6023_low_6
NF6023_low_6
[»] chr4 (1 HSPs)
chr4 (31-328)||(48177929-48178226)


Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 31 - 328
Target Start/End: Original strand, 48177929 - 48178226
Alignment:
Q  31 gagggtgagaaatattgatcctgatcaagtatgggggccaatacatagttcataattatatatttatagctccttttgggcctcagctaaaattaaccta 130  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48177929 gagggtgagaaatatagatcctgatcaagtatgggggccaatacatagttcataattatatatttatagctccttttgggcctcagctaaaattaaccta 48178028  T
Q  131 aaaaagctagaattggacaatcatagtgtatttgaagggacaatcatataaagatggtattccttccctgactttacttgcatatgtagtcgttgatatc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48178029 aaaaagctagaattggacaatcatagtgtatttgaagggacaatcatataaagatggtattccttccctgactttacttgcatatgtagtcgttgatatc 48178128  T
Q  231 ttgatttgttgtcctgtttactaaatcactgaccctattcttggttgactatatcttttgaactttatacatggatgtacatggtaggttctttaagc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||    
T  48178129 ttgatttgttgtcctgtttactaaatcactgaccctattcttggttgactatagcttttgaactttatacatggatgtacattgtagggtctttaagc 48178226  T

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