View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6023_low_7 (Length: 321)
Name: NF6023_low_7
Description: NF6023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6023_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 23408206 - 23407915
Alignment:
| Q |
13 |
attctatattctgaccccgaatcaaccacttgctacccaatttaccaccaatggaggaattgttctccttccggagataaggccctcaccttttttcacc |
112 |
Q |
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| T |
23408206 |
attctgtattctgaccccgaatcaaccacttgctacccaatttaccatcaatggaggaattgttctcctcccggagataaggccctcaccttttttcacc |
23408107 |
T |
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| Q |
113 |
attaacaaaatctttttcatattttttgtggcaaaaattatatgtatgtccaataaaaccacatataaaacaaaacatacccaacttctcgtatttgaat |
212 |
Q |
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| T |
23408106 |
attaacaaaatctttttcatattttttgcggcaaaaattatatgtatgtccaataaaaccacatataaaacaaaacatacccaacttctcgtatttgaat |
23408007 |
T |
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| Q |
213 |
acgagcctgctattttcatcgttcaagtatgatatcttgtttgagtggttcttcaataacaatttccactctgatttttatatatttcctcc |
304 |
Q |
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| T |
23408006 |
acgagcctgctattttcatcgttcaagtatgatatcttgtttgagtggttcttcaataacaatttccactctgattttcatatgtttcctcc |
23407915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 66 - 304
Target Start/End: Original strand, 23408451 - 23408697
Alignment:
| Q |
66 |
gaggaattgttctccttccggagataaggccctcaccttttttcaccattaacaaaatctttttcatattttttgtggcaaaaattatatgtatgtccaa |
165 |
Q |
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| T |
23408451 |
gaggaattgttctcattccggagttaaggcaaccaccttttttctccattagaaaaatctttcaaatattttttgttgcaaaaaaattctctatgtccaa |
23408550 |
T |
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| Q |
166 |
taaaaccacatataaaacaaaacatacccaacttctcgtatttgaatacgagcctgctatttt----cat----cgttcaagtatgatatcttgtttgag |
257 |
Q |
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| T |
23408551 |
tagaaccacatacaaaacaaaacttatctaatttctcgtatttgaataccagccatatatttttgcacatatcaccttcaagtataagatcttgtttgag |
23408650 |
T |
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| Q |
258 |
tggttcttcaataacaatttccactctgatttttatatatttcctcc |
304 |
Q |
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| T |
23408651 |
tggttgttcaatttcaatttccactctgattttcacatattttctcc |
23408697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 14799431 - 14799501
Alignment:
| Q |
234 |
ttcaagtatgatatcttgtttgagtggttcttcaataacaatttccactctgatttttatatatttcctcc |
304 |
Q |
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| T |
14799431 |
ttcaattatgaggtcttgttttagtggctcttcaatagcaatctccaccctaattttcatatatttcctcc |
14799501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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