View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6025_low_1 (Length: 349)
Name: NF6025_low_1
Description: NF6025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6025_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 23332901 - 23332595
Alignment:
| Q |
1 |
catgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggtctatctgcgggatggttggg |
100 |
Q |
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| T |
23332901 |
catgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcaaggtcaaggtccacgtgaaaaatggcaaggtttatctgcgggatggttggg |
23332802 |
T |
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| Q |
101 |
ctgagctgaagggtttctataaggtagatcgtggtgcgtgggtcaccctgacttatgtacagccgaatcttctagatatgactatcgcagagagatcagg |
200 |
Q |
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| T |
23332801 |
ctgagctgaagggtttctataaggtagatcgtggtgcgtgggtcaccctgacgtatgtacagccgaatcttctagatatgactatcgcagagagatcagg |
23332702 |
T |
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| Q |
201 |
agtcgaaatcaactatcctaacaaatttcttcctcccatgtcgaaaatgattgtccaacgtgagggtggatcggtcatgcgcttctatcgctcattcgtc |
300 |
Q |
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| T |
23332701 |
agtcgaaatcaactatcctaacaaatttcttcctcccatgtcgaaaatgattgtcccacgtgagggtggatcggtcatgcgcttctatcgctcattcgtc |
23332602 |
T |
|
| Q |
301 |
cacatat |
307 |
Q |
| |
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|| |||| |
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| T |
23332601 |
catatat |
23332595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 23322373 - 23322331
Alignment:
| Q |
302 |
acatatgcgtttggattttacaacgattgtgtttgatgatgtc |
344 |
Q |
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| T |
23322373 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23322331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 23332540 - 23332498
Alignment:
| Q |
302 |
acatatgcgtttggattttacaacgattgtgtttgatgatgtc |
344 |
Q |
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| T |
23332540 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23332498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 10955092 - 10955166
Alignment:
| Q |
4 |
gttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
80 |
Q |
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|||||||| |||||||| |||||||||| |||| |||||||||||||| ||||||||| ||| || |||||||| |
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| T |
10955092 |
gttgatgactatgtcat--tgcgtgatcctaacaagaacatgttcgaggttaaggtccacaagaagaagggcaaggt |
10955166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 2027759 - 2027692
Alignment:
| Q |
13 |
tatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
80 |
Q |
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|||||||| |||||||||||||||| |||||||| ||||| || || ||| ||||||||||||||| |
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| T |
2027759 |
tatgtcattttgcgtgatccaaacaagaacatgtttgaggttaaagttcacaagaaaaatggcaaggt |
2027692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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