View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6026_high_1 (Length: 988)
Name: NF6026_high_1
Description: NF6026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6026_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 170 - 378
Target Start/End: Complemental strand, 55170273 - 55170065
Alignment:
| Q |
170 |
ttaacagacaatcggtcataattagaattagaaattaggaaacaaaaggaaaaggtagtaagtataactgtgagacaggttgatatagatctgtacgtat |
269 |
Q |
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| T |
55170273 |
ttaacagacaatctgtcataattagaattagaaattaggaaacaaaaggaaaaggtagtaagtataactgtgagacaggttgatatagatctgtacgtat |
55170174 |
T |
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| Q |
270 |
ctaaagttggtgtttgtcaatgacaacataataatgttaccaaactccatcaaatgatagccttcattattcatcaacttttaaccaaatattttggaaa |
369 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55170173 |
ctaaagttggtgtttgtcaatgacaaaacaataatgttaccaaactccatcaaatgatagccttcattattcatcaacttttaaccaaatattttggaaa |
55170074 |
T |
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| Q |
370 |
cggttcagg |
378 |
Q |
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||||||||| |
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| T |
55170073 |
cggttcagg |
55170065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 55170504 - 55170346
Alignment:
| Q |
8 |
attattctgaaatgaaagaaaatcaagtgcataagaagnnnnnnnctggattcgaatca--atgtaaacacggcaatcatagattgtcacagttgtaacc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
55170504 |
attattctgaaatgaaagaaaatcaagtgcataagaagaaaaaaactggattcgaatcacaatgtaaacacggcaatcatagattgtcccagttgtaacc |
55170405 |
T |
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| Q |
106 |
tttttgtacttaa--aaaatactatccaaaattatgaatatttgtttgtaaggaccatt |
162 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
55170404 |
tttttgtacttaaaaaaaatactatccaaaattctgaatatttgtttgtaaggaccatt |
55170346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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